| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is ushA [C]
Identifier: 157961128
GI number: 157961128
Start: 1582695
End: 1584473
Strand: Reverse
Name: ushA [C]
Synonym: Spea_1300
Alternate gene names: 157961128
Gene position: 1584473-1582695 (Counterclockwise)
Preceding gene: 157961129
Following gene: 157961123
Centisome position: 30.62
GC content: 45.76
Gene sequence:
>1779_bases ATGACAACCACCCTACCTAAATCAGTGGCGACAAAAGCGCAATACAAGTTAAAACTTGCCCACATCAATGACACTCACTC ACACTTCGATGCAAACCGTATTCAATTTACGATTTGTGAGCAGCAAAAAGAGCTGACTCTCTATAGCCACACAGGTGGTT ATGCTCGTATCGCTTACCAGCTCAAACAAGCAAGAAACACAGCCAAAAAAGAACGGCAGGAATTTTTATTCTTGCACGGC GGAGACAGTTTCCAAGGCACGCTTTACTTCAATGAGTTCAAAGGTAAAGCCAACTCAGACCTGTTGAACATGCTCCAGCC TGATGCCATGGTGCTAGGCAATCATGAAATAGACGCGGGTAACGAGCCAGTACTCGACTTTCTTAATGATATTAAGTTTC CCCTAATGGCTGGCAACATGGATCTTAGCCAAGAGTGCCTAAATAAAAGTGCGCGCCTAGCTAATCACCGAAACTTACTC GACTTTAACCCTGAGTCACAAACTGCCAAAGTACTGCTAAAGCCATTAGCTGATAAGCAAATCGCCTGCTTTGGCATCAC GCTCGACCAAATGAGTGAAATTGCAGGCCCTGATGAAGACACCCATTTTATTAACGCTATCGCCACTACTCGGCGCACGG TTGCTCAGCTAAAGGCTCAGGGCATTGACCACATTATCGTATTGAGTCACCTAGGGCTGGATCAAGATAAAGTCTTAGCC AGTGAAGTCGATGGCATTAGCCTCATTGTTGGTGGTCACTCACATACCCTACAAGGTGACTTTAGTGAGCTTGGCTTATC TAATATGCCCTATGGTGAGCGTATTAACGATACCGCGATAGTACACGCAGGTAAGTATGCCGAAACCTTAGGTATTGCCG ACATCACTTTTGACTCTAAAGGTAAGGTATTAACGCTCATGGGTGGCAATTACTTCATGTTAGATCAGCAGTTTATCCTG CAGGCTTCCGATGATGTCAGTCCTCAAGATTATCTAAATGTTCGTCAACAACTACAATCCCATCCACTGATCTTATGGGA TGGTGAAGATAGCTTGGTGCAGACAAGAATTCAGCAAAAATACCGACCTAGTCTCGATGCGCTAAATAATAAAATCTTGG GCTTTGTCCCTAAAAGCTTGGTTCATACACGCTTGCCCAGCAAAGCTCTGCCCCACGGCAGTGAAATTGCGCCATGGGTC AGCCGTAGCATGTATCAGGAAACCAGAGAGCTAGGGGTTGAGGTCGACTTCGCACTGCATAATGCCGGTGGCGTACGTCA GTCTCTCGATAAAGGTGATGTGAGTTTGGCGGAGATCTTAGGACGCATTTTACCTTTCGACATCCCATTAGTGACCTATG AGATCCAAGGCCAGTATCTATTTCAGATGCTAGAGTCTGCGATAAATGCGGCAACCAATAACAGTGTGATTGGCACTGGT GCGGGAAGCTTCCCTTACACCTATGGCTTGAAATACTTTTATGATGGTAAACAGGCTTTAGGACAACGCATCATCAAGCT TGAAGTCCTCAGTGATGTAGAAGGTACAATGCAGTGGCGAGAAGTCGATGCGAAGGCTCATTATAAAGGGGTCTCCTCTT CCTATACCGCATCGGGTAAGGAAGGTTATCACCCGATATTGAAAGCAAATTGGCAAAAAGATGTCGATGGCTTGAGTCTG CCACAAGCTTTCATTCGCTTTATCAGTAAAGCCCAAAGCTTAGATGAAGTGCTCGAACCACAGGTTCACTACACCAGCCA TAATCTCGCGCCACTGTAA
Upstream 100 bases:
>100_bases TCAGCCCAGCCTTAAAATCTGCCCTTGCTTAAAAGCAAATTCGGCTTGTTAATAATTAGCCTCGCTGTGCTATACTCCTT GTTTGGTCCCGAGGAATAAG
Downstream 100 bases:
>100_bases TTAAATGCAATTGAGTGGGCAAGGGCTGAACTTCAGTCTTGCCCCCACAACAAAGCAGATTATTTTAGGCTAACGGCTTT ACCATACTGAAGTTGACCAG
Product: 5'-nucleotidase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 592; Mature: 591
Protein sequence:
>592_residues MTTTLPKSVATKAQYKLKLAHINDTHSHFDANRIQFTICEQQKELTLYSHTGGYARIAYQLKQARNTAKKERQEFLFLHG GDSFQGTLYFNEFKGKANSDLLNMLQPDAMVLGNHEIDAGNEPVLDFLNDIKFPLMAGNMDLSQECLNKSARLANHRNLL DFNPESQTAKVLLKPLADKQIACFGITLDQMSEIAGPDEDTHFINAIATTRRTVAQLKAQGIDHIIVLSHLGLDQDKVLA SEVDGISLIVGGHSHTLQGDFSELGLSNMPYGERINDTAIVHAGKYAETLGIADITFDSKGKVLTLMGGNYFMLDQQFIL QASDDVSPQDYLNVRQQLQSHPLILWDGEDSLVQTRIQQKYRPSLDALNNKILGFVPKSLVHTRLPSKALPHGSEIAPWV SRSMYQETRELGVEVDFALHNAGGVRQSLDKGDVSLAEILGRILPFDIPLVTYEIQGQYLFQMLESAINAATNNSVIGTG AGSFPYTYGLKYFYDGKQALGQRIIKLEVLSDVEGTMQWREVDAKAHYKGVSSSYTASGKEGYHPILKANWQKDVDGLSL PQAFIRFISKAQSLDEVLEPQVHYTSHNLAPL
Sequences:
>Translated_592_residues MTTTLPKSVATKAQYKLKLAHINDTHSHFDANRIQFTICEQQKELTLYSHTGGYARIAYQLKQARNTAKKERQEFLFLHG GDSFQGTLYFNEFKGKANSDLLNMLQPDAMVLGNHEIDAGNEPVLDFLNDIKFPLMAGNMDLSQECLNKSARLANHRNLL DFNPESQTAKVLLKPLADKQIACFGITLDQMSEIAGPDEDTHFINAIATTRRTVAQLKAQGIDHIIVLSHLGLDQDKVLA SEVDGISLIVGGHSHTLQGDFSELGLSNMPYGERINDTAIVHAGKYAETLGIADITFDSKGKVLTLMGGNYFMLDQQFIL QASDDVSPQDYLNVRQQLQSHPLILWDGEDSLVQTRIQQKYRPSLDALNNKILGFVPKSLVHTRLPSKALPHGSEIAPWV SRSMYQETRELGVEVDFALHNAGGVRQSLDKGDVSLAEILGRILPFDIPLVTYEIQGQYLFQMLESAINAATNNSVIGTG AGSFPYTYGLKYFYDGKQALGQRIIKLEVLSDVEGTMQWREVDAKAHYKGVSSSYTASGKEGYHPILKANWQKDVDGLSL PQAFIRFISKAQSLDEVLEPQVHYTSHNLAPL >Mature_591_residues TTTLPKSVATKAQYKLKLAHINDTHSHFDANRIQFTICEQQKELTLYSHTGGYARIAYQLKQARNTAKKERQEFLFLHGG DSFQGTLYFNEFKGKANSDLLNMLQPDAMVLGNHEIDAGNEPVLDFLNDIKFPLMAGNMDLSQECLNKSARLANHRNLLD FNPESQTAKVLLKPLADKQIACFGITLDQMSEIAGPDEDTHFINAIATTRRTVAQLKAQGIDHIIVLSHLGLDQDKVLAS EVDGISLIVGGHSHTLQGDFSELGLSNMPYGERINDTAIVHAGKYAETLGIADITFDSKGKVLTLMGGNYFMLDQQFILQ ASDDVSPQDYLNVRQQLQSHPLILWDGEDSLVQTRIQQKYRPSLDALNNKILGFVPKSLVHTRLPSKALPHGSEIAPWVS RSMYQETRELGVEVDFALHNAGGVRQSLDKGDVSLAEILGRILPFDIPLVTYEIQGQYLFQMLESAINAATNNSVIGTGA GSFPYTYGLKYFYDGKQALGQRIIKLEVLSDVEGTMQWREVDAKAHYKGVSSSYTASGKEGYHPILKANWQKDVDGLSLP QAFIRFISKAQSLDEVLEPQVHYTSHNLAPL
Specific function: Degradation Of External Udp-Glucose To Uridine Monophosphate And Glucose-1-Phosphate, Which Can Then Be Used By The Cell. [C]
COG id: COG0737
COG function: function code F; 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases
Gene ontology:
Cell location: Cell membrane; Lipid-anchor (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the 5'-nucleotidase family [H]
Homologues:
Organism=Homo sapiens, GI4505467, Length=589, Percent_Identity=24.2784380305603, Blast_Score=129, Evalue=8e-30, Organism=Escherichia coli, GI1790658, Length=323, Percent_Identity=24.1486068111455, Blast_Score=65, Evalue=1e-11, Organism=Drosophila melanogaster, GI28573524, Length=541, Percent_Identity=28.0961182994455, Blast_Score=176, Evalue=3e-44, Organism=Drosophila melanogaster, GI19922444, Length=559, Percent_Identity=26.4758497316637, Blast_Score=175, Evalue=9e-44, Organism=Drosophila melanogaster, GI24641187, Length=557, Percent_Identity=26.7504488330341, Blast_Score=162, Evalue=8e-40, Organism=Drosophila melanogaster, GI221329836, Length=552, Percent_Identity=27.3550724637681, Blast_Score=160, Evalue=3e-39, Organism=Drosophila melanogaster, GI19922446, Length=559, Percent_Identity=24.6869409660107, Blast_Score=152, Evalue=6e-37, Organism=Drosophila melanogaster, GI24654424, Length=559, Percent_Identity=24.6869409660107, Blast_Score=152, Evalue=6e-37,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008334 - InterPro: IPR006146 - InterPro: IPR006179 - InterPro: IPR004843 - InterPro: IPR006420 [H]
Pfam domain/function: PF02872 5_nucleotid_C; PF00149 Metallophos [H]
EC number: =3.1.3.5 [H]
Molecular weight: Translated: 65781; Mature: 65650
Theoretical pI: Translated: 6.23; Mature: 6.23
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTLPKSVATKAQYKLKLAHINDTHSHFDANRIQFTICEQQKELTLYSHTGGYARIAYQ CCCCCCHHHHCCCEEEEEEEEECCCHHCCCCCCEEEEEECCCCCEEEEECCCCHHHHHHH LKQARNTAKKERQEFLFLHGGDSFQGTLYFNEFKGKANSDLLNMLQPDAMVLGNHEIDAG HHHHHHHHHHHHHEEEEEECCCCCEEEEEEEECCCCCCHHHHHHCCCCEEEECCCCCCCC NEPVLDFLNDIKFPLMAGNMDLSQECLNKSARLANHRNLLDFNPESQTAKVLLKPLADKQ CCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHCCCCC IACFGITLDQMSEIAGPDEDTHFINAIATTRRTVAQLKAQGIDHIIVLSHLGLDQDKVLA EEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH SEVDGISLIVGGHSHTLQGDFSELGLSNMPYGERINDTAIVHAGKYAETLGIADITFDSK HCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCHHHHCCCEEEEECCC GKVLTLMGGNYFMLDQQFILQASDDVSPQDYLNVRQQLQSHPLILWDGEDSLVQTRIQQK CCEEEEECCCEEEECHHHHEECCCCCCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHH YRPSLDALNNKILGFVPKSLVHTRLPSKALPHGSEIAPWVSRSMYQETRELGVEVDFALH HCCCHHHHCCCHHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE NAGGVRQSLDKGDVSLAEILGRILPFDIPLVTYEIQGQYLFQMLESAINAATNNSVIGTG CCCCHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCEEECC AGSFPYTYGLKYFYDGKQALGQRIIKLEVLSDVEGTMQWREVDAKAHYKGVSSSYTASGK CCCCCHHHCCEEEECCHHHHHHHHEEHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCCCC EGYHPILKANWQKDVDGLSLPQAFIRFISKAQSLDEVLEPQVHYTSHNLAPL CCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC >Mature Secondary Structure TTTLPKSVATKAQYKLKLAHINDTHSHFDANRIQFTICEQQKELTLYSHTGGYARIAYQ CCCCCHHHHCCCEEEEEEEEECCCHHCCCCCCEEEEEECCCCCEEEEECCCCHHHHHHH LKQARNTAKKERQEFLFLHGGDSFQGTLYFNEFKGKANSDLLNMLQPDAMVLGNHEIDAG HHHHHHHHHHHHHEEEEEECCCCCEEEEEEEECCCCCCHHHHHHCCCCEEEECCCCCCCC NEPVLDFLNDIKFPLMAGNMDLSQECLNKSARLANHRNLLDFNPESQTAKVLLKPLADKQ CCHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHCCCCC IACFGITLDQMSEIAGPDEDTHFINAIATTRRTVAQLKAQGIDHIIVLSHLGLDQDKVLA EEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHH SEVDGISLIVGGHSHTLQGDFSELGLSNMPYGERINDTAIVHAGKYAETLGIADITFDSK HCCCCEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCEEEECCCHHHHCCCEEEEECCC GKVLTLMGGNYFMLDQQFILQASDDVSPQDYLNVRQQLQSHPLILWDGEDSLVQTRIQQK CCEEEEECCCEEEECHHHHEECCCCCCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHH YRPSLDALNNKILGFVPKSLVHTRLPSKALPHGSEIAPWVSRSMYQETRELGVEVDFALH HCCCHHHHCCCHHHHCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEE NAGGVRQSLDKGDVSLAEILGRILPFDIPLVTYEIQGQYLFQMLESAINAATNNSVIGTG CCCCHHHHCCCCCCHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCEEECC AGSFPYTYGLKYFYDGKQALGQRIIKLEVLSDVEGTMQWREVDAKAHYKGVSSSYTASGK CCCCCHHHCCEEEECCHHHHHHHHEEHHHHHCCHHHHHHHHHCCHHHHCCCCCCCCCCCC EGYHPILKANWQKDVDGLSLPQAFIRFISKAQSLDEVLEPQVHYTSHNLAPL CCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9665876 [H]