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The map label for this gene is cydA [H]

Identifier: 157960947

GI number: 157960947

Start: 1356467

End: 1358125

Strand: Reverse

Name: cydA [H]

Synonym: Spea_1119

Alternate gene names: 157960947

Gene position: 1358125-1356467 (Counterclockwise)

Preceding gene: 157960948

Following gene: 157960945

Centisome position: 26.25

GC content: 45.87

Gene sequence:

>1659_bases
ATGATTGAACACGCTTTAACCGATAGCGCCAGACTCGAATTTGCACTCAGTATGATGGTGCACCAAATTTTTGTGCCTCT
GTTTATTGGCCTTATGCTAGTCACTGCAATTTTTGAAACCTTATACGTCACCAAATCAAATGCTGAATATAAATCGGCAG
CGCAATTTATTGGCAAGCTGTGTTTGCCTATTGTGTTTGTATTAATTATCACTGGTATATTAACTCCTCCCATGCCGGAA
GACTGGCAACAACTCGACATATTTATCAACAGCGTATTCAGTGAATATGTCGGACTGCTTGGCACCATAGTGTCTACTGG
TATGATGCTCTGGCTTACCGCGGTGAGCCTGTTCTATGTCGGTTGGCGATATCTTCCCGCCAAGGTTCACCTTTTCATCA
CTTGGTTATTACCCTTTATCTGTGCCTATACCGAGCTACCAGTCATCGTACTCAATGGCTGGATGCATGATCCAAGCTCA
GCAATGCAATTTGATATCAACACCATGACATACCAAGCAAGTTCGCTACTTGAAATTGTCAGCACACCTATGGCAAGTAC
ACGCTTTGCCCATATGTTTACTGGTGCATTCTTAATCGGTGGCGTGACTCTTATCTCTTTGTCCTGCTATTACCTACAAA
AAAATAGACAACAAGCCTTTGCCCAAACGGGGGTAGTGATAGGAGCCAGTATCGGCTTATGTTTCTCACTGTTTGCCATA
TTTAGCGGAGACATTCACGGCCGTGACGTTCATCAGGCGCAACCGATGAAATTGGCGCAACTCGAAGCCTTATGGAAGAC
GCAGCAAGATGGTGCCGATCTGGTGTTATTTGCACTACCGGATCAGCAAGCAGAGGAGAATAGATTCGAAGTTAAGATCC
CTAAAGTGCTTGGCTGGATGCTATCTGGAACCGATGACACTCAGCCGGTGAAGGGCATCAAGCAGTTAAGAGCTGAAAAT
ATGCAGCGTATTCGCAACGGCTTATTAGCCCATCAGGCCATCGCAGCTTACTCATCTTCATCAAACAAACAGGCTAAAAG
AGAGCTTATACAAGCCCACCAGCAAGATCTTGGCTATGCCGAGCTAGTTCGAAAATACAATCCGGATCTAATCGAGGTAA
CCGAAGAGCAGATCCGCCTAGCGGCTAACGACACGGTCAACAATGTTTGCCTGCTATTTTTTAGTTTCCGTGTGATGGTC
GGCGCAGGCATATTCATTTTGCTACTCAGTAGTTACTGGATTTACCTAGCCATCAAAGGCAGAGTTAACAGCGTTAGCAC
TAGACTACTCAAGCTCAGCACCTATGCCCTGCCCATTCCTTTTATCGCTTATTTATCCGGCTGGCTTCTTTCTGAGTATG
GCCGTCAACCTTGGGTGATTTATGGCGTGATGCCAACATTACAGGGTGCGGGTTCGTTTGCAACAGGGCAAACCAATGGG
TTTCAGCTACCGACCTTACTCATGAGCTACGCCGCCCTATTTCTGATCTTGGGAGTCATATTGGCTCGCTGGATAAAACA
AGGCCCTAAGCCTGCTATTTCAGTCGAGAAAGTCTGTTTACAGGCTGGTGCTATCCAGACCGACGCTTTAGAAGCAGAGC
CTGCTAAAACAGCATCAACAACAGCTACATTAACAAACATAAAACCGGAGTCACTATGA

Upstream 100 bases:

>100_bases
CATTTCCCTGACTAAATATCGTTTCAGGAAAAACAGATTCAACTTATAGGAAAATCAATCCTGTTATGGTCTGCCTAACT
ATATGGATAGGTAAGTACTA

Downstream 100 bases:

>100_bases
TCTATTTCTCTGTCATTTTTGTCGCTATCGCAGCGGCGTTTATCGCCAATAAACTCGTTAAGCAATAGGCTATCTTGTCT
ATATTCACAACTTTACTGGC

Product: cytochrome bd ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 552; Mature: 552

Protein sequence:

>552_residues
MIEHALTDSARLEFALSMMVHQIFVPLFIGLMLVTAIFETLYVTKSNAEYKSAAQFIGKLCLPIVFVLIITGILTPPMPE
DWQQLDIFINSVFSEYVGLLGTIVSTGMMLWLTAVSLFYVGWRYLPAKVHLFITWLLPFICAYTELPVIVLNGWMHDPSS
AMQFDINTMTYQASSLLEIVSTPMASTRFAHMFTGAFLIGGVTLISLSCYYLQKNRQQAFAQTGVVIGASIGLCFSLFAI
FSGDIHGRDVHQAQPMKLAQLEALWKTQQDGADLVLFALPDQQAEENRFEVKIPKVLGWMLSGTDDTQPVKGIKQLRAEN
MQRIRNGLLAHQAIAAYSSSSNKQAKRELIQAHQQDLGYAELVRKYNPDLIEVTEEQIRLAANDTVNNVCLLFFSFRVMV
GAGIFILLLSSYWIYLAIKGRVNSVSTRLLKLSTYALPIPFIAYLSGWLLSEYGRQPWVIYGVMPTLQGAGSFATGQTNG
FQLPTLLMSYAALFLILGVILARWIKQGPKPAISVEKVCLQAGAIQTDALEAEPAKTASTTATLTNIKPESL

Sequences:

>Translated_552_residues
MIEHALTDSARLEFALSMMVHQIFVPLFIGLMLVTAIFETLYVTKSNAEYKSAAQFIGKLCLPIVFVLIITGILTPPMPE
DWQQLDIFINSVFSEYVGLLGTIVSTGMMLWLTAVSLFYVGWRYLPAKVHLFITWLLPFICAYTELPVIVLNGWMHDPSS
AMQFDINTMTYQASSLLEIVSTPMASTRFAHMFTGAFLIGGVTLISLSCYYLQKNRQQAFAQTGVVIGASIGLCFSLFAI
FSGDIHGRDVHQAQPMKLAQLEALWKTQQDGADLVLFALPDQQAEENRFEVKIPKVLGWMLSGTDDTQPVKGIKQLRAEN
MQRIRNGLLAHQAIAAYSSSSNKQAKRELIQAHQQDLGYAELVRKYNPDLIEVTEEQIRLAANDTVNNVCLLFFSFRVMV
GAGIFILLLSSYWIYLAIKGRVNSVSTRLLKLSTYALPIPFIAYLSGWLLSEYGRQPWVIYGVMPTLQGAGSFATGQTNG
FQLPTLLMSYAALFLILGVILARWIKQGPKPAISVEKVCLQAGAIQTDALEAEPAKTASTTATLTNIKPESL
>Mature_552_residues
MIEHALTDSARLEFALSMMVHQIFVPLFIGLMLVTAIFETLYVTKSNAEYKSAAQFIGKLCLPIVFVLIITGILTPPMPE
DWQQLDIFINSVFSEYVGLLGTIVSTGMMLWLTAVSLFYVGWRYLPAKVHLFITWLLPFICAYTELPVIVLNGWMHDPSS
AMQFDINTMTYQASSLLEIVSTPMASTRFAHMFTGAFLIGGVTLISLSCYYLQKNRQQAFAQTGVVIGASIGLCFSLFAI
FSGDIHGRDVHQAQPMKLAQLEALWKTQQDGADLVLFALPDQQAEENRFEVKIPKVLGWMLSGTDDTQPVKGIKQLRAEN
MQRIRNGLLAHQAIAAYSSSSNKQAKRELIQAHQQDLGYAELVRKYNPDLIEVTEEQIRLAANDTVNNVCLLFFSFRVMV
GAGIFILLLSSYWIYLAIKGRVNSVSTRLLKLSTYALPIPFIAYLSGWLLSEYGRQPWVIYGVMPTLQGAGSFATGQTNG
FQLPTLLMSYAALFLILGVILARWIKQGPKPAISVEKVCLQAGAIQTDALEAEPAKTASTTATLTNIKPESL

Specific function: May be involved in maintaining the low intracellular oxygen concentration required for nitrogen fixation [H]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI87081779, Length=474, Percent_Identity=34.5991561181435, Blast_Score=295, Evalue=7e-81,
Organism=Escherichia coli, GI1787212, Length=523, Percent_Identity=32.3135755258126, Blast_Score=259, Evalue=2e-70,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 61228; Mature: 61228

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CEEEECCCCCCC
>Mature Secondary Structure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CEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1655703; 1660468; 2170336 [H]