| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is btuB [H]
Identifier: 157960819
GI number: 157960819
Start: 1205124
End: 1207901
Strand: Reverse
Name: btuB [H]
Synonym: Spea_0991
Alternate gene names: 157960819
Gene position: 1207901-1205124 (Counterclockwise)
Preceding gene: 157960821
Following gene: 157960818
Centisome position: 23.34
GC content: 45.46
Gene sequence:
>2778_bases ATGAAATCTAAGATGAAACCTAAGATGAAAATTTCAGCATTGAGCCTAGCCATAGCTATGGCAACGCTCACCCCCTCAAC CTCGTTTGCAGCCGAAGCTGCTGACAAACCTGAAGCCAAAAAAGAAATGGAAAAAATGGAAGTCACAGGTTCACGTATCA AACGTGCCGACTTCGAAGGTGTTGCCCCAGTAACCGTGATCACCGCCGATGATATTGCCAATAGCGGCCTTAACTCTATT GCAGAAGTACTGCAATCCTCTGTTGCCAATACTGGTGGCTCGCTAAACGGTGAAAGCGATGGCTATACTGATAGCGCAAG CTCGGTTAACTTACGTGGTATGGGCGCAAACCGTACCTTGGTACTGATCAACAGTCGTCGCCAGGCCTCTTTCCCCAGCG CTGCAGGCGGCACCTCAAACTTTGTCGACGTCTCAGATATTCCCTCTGCGGCGGTTGAGCGTATCGAAATCCTAACCGGT GGCGCTTCGGCAATCTACGGCTCCGATGCGGTAGGTGGTGTGGTGAACATCATCTTAAAGCAGCAATACGATGGCGCTAA AGTCGCCGCTAAATATACCGAGCCAACTCAAGGTGGTGGTGAGCAGTTAGATCTATCTTACCTACAAGGTTTTAATACTG AAAAGAGCCAAACCCTGTTAATGCTCGAATATAAGAAAGTCGAATCGATTCAAACATATCAGCGTGACGACCTTTATAGC CCGGCATATTATGAAGATGAAGACGGTGATCTTCGTTGGGGTGCAGGTCCTTATGGCGACGCAGCAGCTTCAAGCTGGTC ATCTCGAATTACCGATTACAGTAAAGTTTATCACGAAGATAAATACGTCAACCTCGACGAGCAGCAATGTAACGAATTAT TTGGTGACAAAGGCATTTACACCCCAGTAGGCAAGTATGATTGCTACTACGACAAGTACGCCGACCGAGGCCTACAATCG GCTTATGACCGCGTTAACTTAGTGCTTAACACAAATTATGACTTAAACGATGATTGGCAAATTTACGGCATGATCAACGC TTCTTATAAAGAAGCCACTAAGTACAAAGATGAGAAAGGTTTCGGCACCAACATCTATCAAGATGAAGCGACGGGTGCAC TGAGTTATGACAAATATGAGTTCGAAGATGACAACCGCTTCTACCTAGCTCGCAGAATGGAAGAGTATCCTGGACCACGT ACCTATGACACGCAAAACACTAAGGCAGCGATCTCGTTTGGCGCCGACGGTACTATTGGTGAGTACGAGCTAGATCTGTC ATGGTCAAGCAGCTATAACAAATACGAAAAGCAAAACCATCACATGGTGAGCGCCGATGCGCTGCTCGATATCGTCACTT TCGATCCTAATGATACAGATCCATCAAAGTGGTATCCGCATAACGAACTAACGACCGAACAAGCAAACCTACTAATTGCT GATTCAACCAAGAACTCAGATTCAAGCATGCACCAGTTCCAAGCAGTATTTACTGGCGATTTAATGGAGTTACCCGCAGG CACCGCTGGCTTTGCAACGACTGCTGAATGGGCACGTGAAAGTTATGAAGATACCCTAGATGATGTCACATCAAATGGTG GCTTAATTGGCATGGGTGGTACTGGTGGTAAAGGCGATCGTGACCGCGTCGCCGTTGCTGGTGAATTACAAATACCGCTA CTTGCCGATATCACAGGGGTTAAGTCATTAGACCTTTCTGCCGCACTGCGTTACGACCAATACTTAGATGATTCCGATGT AGGCGGCGCAACCACACCACAGGTTGGCCTATCTTATCGCCCAATTAATGAAATCATGGTTCGTGCTAACTGGGGTAAAA GCTTTAGAGCGCCAGATATGCACCGTCTATATGCAGGCCGTACTATCGGCTTCGGTGGCACCGATTATCCGCACCCTACT ATTCCAGATGAGATCTATGAAGATGATTATCGCTCAATTACTCAAGGTAACTTAAACCTCGAAGAGGAAAAGGGTGAATT CTGGAACGTCGGCTTTGTGGCTAACATTACTGATAATGCCGATATCACGGTTGACTGGTGGAACATTGAGCTTGAAGGTG CCGTAAAAACTATCTCTACCGATGAAATGCTAGATGATAAGTCTTATTACCAAACAGGAAACTATAACAGCTGTGAAGAA ATGGACGTTGTCGGTTACCTGACTGAATTTGATGACGATGGCATCGAAAACATCGCCTGTATGCGTAAAGGCCCTATCAA CAGCGCCTATGAAGCATCTGAAGGTATTGATACCAGCTTTAACTATCAATTCCCAGAAACAGCTATTGGTGAGTTCAAGT TTAAAGTCGCCGCCTCTTACTTAATTAAGAAAGAGTACCAAGAGCGTGTCGATAGCGAAATTGAAGAGCAAACTGAAACC GATTATTTCCCTAAGTGGAAAGGTAACGCAAGTCTGAGCTGGAACTATGAAGACTTCAGTGCAACCGTTTATTACTACTA CACAGGTGAAGCAAAAGGTGTGGATCTGTTCGAGTACTTAGATGAGAACGGTGATGATGTCGAGTCTATGGAGACAGATA CCTTAGATGCTTATCAAACAGTCAACATTACCTTGAACTACTACGCACCTTGGAAAGGTAAGTTCACTGCGGGTGTTAAA AACCTAACCGATGAGATGCCACCTTTGTACGATGTGCGTAACGACAAGCACAATGACTGGCCTTTCTATGAAGATGACAA CAGTAGCTATTCAAATACTGGACGTAGTTTCTTCCTTGGTTATTCACAGAAGTTTTAA
Upstream 100 bases:
>100_bases CAGTATTCACCCCAGGAATGACTCGCCTTAATCAGATGATGTTGTGCGCAAATAGAATTAGAGGCGTTTGGGGACATTAT AAAAATAAGGACTGCAATCA
Downstream 100 bases:
>100_bases ACTCGTATAAACCTCCCTTAATAACGAGTTCTCAAGCGCCCATCTGATGGGCGCTTATTTTTAAATAACCACTTCTGGAT CAGGAGATAAGAATGTCTCG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 925; Mature: 925
Protein sequence:
>925_residues MKSKMKPKMKISALSLAIAMATLTPSTSFAAEAADKPEAKKEMEKMEVTGSRIKRADFEGVAPVTVITADDIANSGLNSI AEVLQSSVANTGGSLNGESDGYTDSASSVNLRGMGANRTLVLINSRRQASFPSAAGGTSNFVDVSDIPSAAVERIEILTG GASAIYGSDAVGGVVNIILKQQYDGAKVAAKYTEPTQGGGEQLDLSYLQGFNTEKSQTLLMLEYKKVESIQTYQRDDLYS PAYYEDEDGDLRWGAGPYGDAAASSWSSRITDYSKVYHEDKYVNLDEQQCNELFGDKGIYTPVGKYDCYYDKYADRGLQS AYDRVNLVLNTNYDLNDDWQIYGMINASYKEATKYKDEKGFGTNIYQDEATGALSYDKYEFEDDNRFYLARRMEEYPGPR TYDTQNTKAAISFGADGTIGEYELDLSWSSSYNKYEKQNHHMVSADALLDIVTFDPNDTDPSKWYPHNELTTEQANLLIA DSTKNSDSSMHQFQAVFTGDLMELPAGTAGFATTAEWARESYEDTLDDVTSNGGLIGMGGTGGKGDRDRVAVAGELQIPL LADITGVKSLDLSAALRYDQYLDDSDVGGATTPQVGLSYRPINEIMVRANWGKSFRAPDMHRLYAGRTIGFGGTDYPHPT IPDEIYEDDYRSITQGNLNLEEEKGEFWNVGFVANITDNADITVDWWNIELEGAVKTISTDEMLDDKSYYQTGNYNSCEE MDVVGYLTEFDDDGIENIACMRKGPINSAYEASEGIDTSFNYQFPETAIGEFKFKVAASYLIKKEYQERVDSEIEEQTET DYFPKWKGNASLSWNYEDFSATVYYYYTGEAKGVDLFEYLDENGDDVESMETDTLDAYQTVNITLNYYAPWKGKFTAGVK NLTDEMPPLYDVRNDKHNDWPFYEDDNSSYSNTGRSFFLGYSQKF
Sequences:
>Translated_925_residues MKSKMKPKMKISALSLAIAMATLTPSTSFAAEAADKPEAKKEMEKMEVTGSRIKRADFEGVAPVTVITADDIANSGLNSI AEVLQSSVANTGGSLNGESDGYTDSASSVNLRGMGANRTLVLINSRRQASFPSAAGGTSNFVDVSDIPSAAVERIEILTG GASAIYGSDAVGGVVNIILKQQYDGAKVAAKYTEPTQGGGEQLDLSYLQGFNTEKSQTLLMLEYKKVESIQTYQRDDLYS PAYYEDEDGDLRWGAGPYGDAAASSWSSRITDYSKVYHEDKYVNLDEQQCNELFGDKGIYTPVGKYDCYYDKYADRGLQS AYDRVNLVLNTNYDLNDDWQIYGMINASYKEATKYKDEKGFGTNIYQDEATGALSYDKYEFEDDNRFYLARRMEEYPGPR TYDTQNTKAAISFGADGTIGEYELDLSWSSSYNKYEKQNHHMVSADALLDIVTFDPNDTDPSKWYPHNELTTEQANLLIA DSTKNSDSSMHQFQAVFTGDLMELPAGTAGFATTAEWARESYEDTLDDVTSNGGLIGMGGTGGKGDRDRVAVAGELQIPL LADITGVKSLDLSAALRYDQYLDDSDVGGATTPQVGLSYRPINEIMVRANWGKSFRAPDMHRLYAGRTIGFGGTDYPHPT IPDEIYEDDYRSITQGNLNLEEEKGEFWNVGFVANITDNADITVDWWNIELEGAVKTISTDEMLDDKSYYQTGNYNSCEE MDVVGYLTEFDDDGIENIACMRKGPINSAYEASEGIDTSFNYQFPETAIGEFKFKVAASYLIKKEYQERVDSEIEEQTET DYFPKWKGNASLSWNYEDFSATVYYYYTGEAKGVDLFEYLDENGDDVESMETDTLDAYQTVNITLNYYAPWKGKFTAGVK NLTDEMPPLYDVRNDKHNDWPFYEDDNSSYSNTGRSFFLGYSQKF >Mature_925_residues MKSKMKPKMKISALSLAIAMATLTPSTSFAAEAADKPEAKKEMEKMEVTGSRIKRADFEGVAPVTVITADDIANSGLNSI AEVLQSSVANTGGSLNGESDGYTDSASSVNLRGMGANRTLVLINSRRQASFPSAAGGTSNFVDVSDIPSAAVERIEILTG GASAIYGSDAVGGVVNIILKQQYDGAKVAAKYTEPTQGGGEQLDLSYLQGFNTEKSQTLLMLEYKKVESIQTYQRDDLYS PAYYEDEDGDLRWGAGPYGDAAASSWSSRITDYSKVYHEDKYVNLDEQQCNELFGDKGIYTPVGKYDCYYDKYADRGLQS AYDRVNLVLNTNYDLNDDWQIYGMINASYKEATKYKDEKGFGTNIYQDEATGALSYDKYEFEDDNRFYLARRMEEYPGPR TYDTQNTKAAISFGADGTIGEYELDLSWSSSYNKYEKQNHHMVSADALLDIVTFDPNDTDPSKWYPHNELTTEQANLLIA DSTKNSDSSMHQFQAVFTGDLMELPAGTAGFATTAEWARESYEDTLDDVTSNGGLIGMGGTGGKGDRDRVAVAGELQIPL LADITGVKSLDLSAALRYDQYLDDSDVGGATTPQVGLSYRPINEIMVRANWGKSFRAPDMHRLYAGRTIGFGGTDYPHPT IPDEIYEDDYRSITQGNLNLEEEKGEFWNVGFVANITDNADITVDWWNIELEGAVKTISTDEMLDDKSYYQTGNYNSCEE MDVVGYLTEFDDDGIENIACMRKGPINSAYEASEGIDTSFNYQFPETAIGEFKFKVAASYLIKKEYQERVDSEIEEQTET DYFPKWKGNASLSWNYEDFSATVYYYYTGEAKGVDLFEYLDENGDDVESMETDTLDAYQTVNITLNYYAPWKGKFTAGVK NLTDEMPPLYDVRNDKHNDWPFYEDDNSSYSNTGRSFFLGYSQKF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=206, Percent_Identity=31.0679611650485, Blast_Score=82, Evalue=2e-16, Organism=Escherichia coli, GI1788478, Length=138, Percent_Identity=34.7826086956522, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1786798, Length=179, Percent_Identity=30.7262569832402, Blast_Score=64, Evalue=3e-11,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 103065; Mature: 103065
Theoretical pI: Translated: 4.11; Mature: 4.11
Prosite motif: PS01156 TONB_DEPENDENT_REC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSKMKPKMKISALSLAIAMATLTPSTSFAAEAADKPEAKKEMEKMEVTGSRIKRADFEG CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC VAPVTVITADDIANSGLNSIAEVLQSSVANTGGSLNGESDGYTDSASSVNLRGMGANRTL CCCEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEE VLINSRRQASFPSAAGGTSNFVDVSDIPSAAVERIEILTGGASAIYGSDAVGGVVNIILK EEEECCCCCCCCCCCCCCCCEEECCCCCHHHHHEEEEEECCCCEECCCCHHHHHHHHHHH QQYDGAKVAAKYTEPTQGGGEQLDLSYLQGFNTEKSQTLLMLEYKKVESIQTYQRDDLYS CCCCCCEEEEEECCCCCCCCCEEEHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCC PAYYEDEDGDLRWGAGPYGDAAASSWSSRITDYSKVYHEDKYVNLDEQQCNELFGDKGIY CCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCC TPVGKYDCYYDKYADRGLQSAYDRVNLVLNTNYDLNDDWQIYGMINASYKEATKYKDEKG CCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCEEEEEEEECCHHHHHHCCCCCC FGTNIYQDEATGALSYDKYEFEDDNRFYLARRMEEYPGPRTYDTQNTKAAISFGADGTIG CCCCCCCCCCCCCEECCCEEECCCCEEEEEHHHHHCCCCCCCCCCCCEEEEEECCCCCCC EYELDLSWSSSYNKYEKQNHHMVSADALLDIVTFDPNDTDPSKWYPHNELTTEQANLLIA EEEEEEEECCCCHHHHHCCCEEEEHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE DSTKNSDSSMHQFQAVFTGDLMELPAGTAGFATTAEWARESYEDTLDDVTSNGGLIGMGG ECCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECC TGGKGDRDRVAVAGELQIPLLADITGVKSLDLSAALRYDQYLDDSDVGGATTPQVGLSYR CCCCCCCCEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEC PINEIMVRANWGKSFRAPDMHRLYAGRTIGFGGTDYPHPTIPDEIYEDDYRSITQGNLNL CHHHEEEEECCCCCCCCCCHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE EEEKGEFWNVGFVANITDNADITVDWWNIELEGAVKTISTDEMLDDKSYYQTGNYNSCEE ECCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCEEECCCHHHHCCCHHCCCCCCCCCCH MDVVGYLTEFDDDGIENIACMRKGPINSAYEASEGIDTSFNYQFPETAIGEFKFKVAASY HHHEEEEECCCCCCCHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH LIKKEYQERVDSEIEEQTETDYFPKWKGNASLSWNYEDFSATVYYYYTGEAKGVDLFEYL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCHHHHHH DENGDDVESMETDTLDAYQTVNITLNYYAPWKGKFTAGVKNLTDEMPPLYDVRNDKHNDW CCCCCCHHHHCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCEECCCCCCCCC PFYEDDNSSYSNTGRSFFLGYSQKF CCEECCCCCCCCCCCEEEEECCCCC >Mature Secondary Structure MKSKMKPKMKISALSLAIAMATLTPSTSFAAEAADKPEAKKEMEKMEVTGSRIKRADFEG CCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCC VAPVTVITADDIANSGLNSIAEVLQSSVANTGGSLNGESDGYTDSASSVNLRGMGANRTL CCCEEEEEHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCCEE VLINSRRQASFPSAAGGTSNFVDVSDIPSAAVERIEILTGGASAIYGSDAVGGVVNIILK EEEECCCCCCCCCCCCCCCCEEECCCCCHHHHHEEEEEECCCCEECCCCHHHHHHHHHHH QQYDGAKVAAKYTEPTQGGGEQLDLSYLQGFNTEKSQTLLMLEYKKVESIQTYQRDDLYS CCCCCCEEEEEECCCCCCCCCEEEHHHHCCCCCCCCCEEEEEEHHHHHHHHHHHHCCCCC PAYYEDEDGDLRWGAGPYGDAAASSWSSRITDYSKVYHEDKYVNLDEQQCNELFGDKGIY CCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCC TPVGKYDCYYDKYADRGLQSAYDRVNLVLNTNYDLNDDWQIYGMINASYKEATKYKDEKG CCCCCCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCCCEEEEEEEECCHHHHHHCCCCCC FGTNIYQDEATGALSYDKYEFEDDNRFYLARRMEEYPGPRTYDTQNTKAAISFGADGTIG CCCCCCCCCCCCCEECCCEEECCCCEEEEEHHHHHCCCCCCCCCCCCEEEEEECCCCCCC EYELDLSWSSSYNKYEKQNHHMVSADALLDIVTFDPNDTDPSKWYPHNELTTEQANLLIA EEEEEEEECCCCHHHHHCCCEEEEHHHEEEEEEECCCCCCCCCCCCCCCCCCCCCCEEEE DSTKNSDSSMHQFQAVFTGDLMELPAGTAGFATTAEWARESYEDTLDDVTSNGGLIGMGG ECCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECC TGGKGDRDRVAVAGELQIPLLADITGVKSLDLSAALRYDQYLDDSDVGGATTPQVGLSYR CCCCCCCCEEEEEECCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEC PINEIMVRANWGKSFRAPDMHRLYAGRTIGFGGTDYPHPTIPDEIYEDDYRSITQGNLNL CHHHEEEEECCCCCCCCCCHHHHHCCCEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCE EEEKGEFWNVGFVANITDNADITVDWWNIELEGAVKTISTDEMLDDKSYYQTGNYNSCEE ECCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCEEECCCHHHHCCCHHCCCCCCCCCCH MDVVGYLTEFDDDGIENIACMRKGPINSAYEASEGIDTSFNYQFPETAIGEFKFKVAASY HHHEEEEECCCCCCCHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHH LIKKEYQERVDSEIEEQTETDYFPKWKGNASLSWNYEDFSATVYYYYTGEAKGVDLFEYL HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEEEEECCCCCCCHHHHHH DENGDDVESMETDTLDAYQTVNITLNYYAPWKGKFTAGVKNLTDEMPPLYDVRNDKHNDW CCCCCCHHHHCCCCCCCEEEEEEEEEEECCCCCCCHHHHHHHHHCCCCCEECCCCCCCCC PFYEDDNSSYSNTGRSFFLGYSQKF CCEECCCCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11598060 [H]