| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is cat [H]
Identifier: 157960467
GI number: 157960467
Start: 789273
End: 790736
Strand: Direct
Name: cat [H]
Synonym: Spea_0638
Alternate gene names: 157960467
Gene position: 789273-790736 (Clockwise)
Preceding gene: 157960466
Following gene: 157960469
Centisome position: 15.25
GC content: 48.29
Gene sequence:
>1464_bases ATGAGTCAGCAAAACCGAGTTCTTACCGCACAAAATGGCGCACCAATTAGCGATGACCAAAACTCACTGTCAGCAGGTGA GCGTGGACCTCTTTTACTTCAAGATTGGCACCTTATCGAGAAGTTAGCTCACTTTAACCGTGAGCGTATTCCAGAGCGTA TCGTACATGCTAAAGGTACAGGTGTTTACGGTAAGTTTACCCTGACTCGTGACATGAGTGACTACACCATTGCCGATCAC TTTAACGGTGTAGGTAAAGAGACTGAAACCTTTGTGCGTTTCTCTACCGTGGGTGGTGAGATGGGCTCGGCCGATGCCGA ACGTGACCCACGCGGTTTCGGTCTACGTTTTTATACCGAGCGTGGTAATCACGATATCGTAGGTAACAACACGCCGACTT TCTTCCTGCGTGATGGCATCAAGTTCCCAGACTTTATTCATACTCAGAAGCGTAATCCACAGACCAATCTTAAAGATCCT CATGCGATGTGGGACTTCTGGGCACTCAACCCAGAGGCTATGCATCAGGTGACGGTATTGATGTCAGATCGCGGTATTCC GGCAAACTATCGTCAGATGCATGGTTTTGGTTCGCATACTTTCTCATTCTGGAATGCAAAAGGTGAGCGTTTCTGGGTTA AGTTCCACTTTAAGACAAAGCAGGGCATAGCTAACTTAACGGCTGAACAGGCTGATATCCTTAAAGGTATCGATCCTGAT TCATCACAGCGTGACATGGTTGCGGCTATTAATGATGGCAACTTCCCTAAGTGGGCTGTCAAAGTGCAGATCATGCCTGA AGCTGAAGCAAACACTTATAAGATCAACCCGTTTGATTTAACTAAAGTGTGGCCACATGCCGATTACCCACTGATTGAAA TTGGCGAGCTTGAGCTAAACCGTATGCCGCAAAACTACTTTGCAGAAGTTGAGCAAGTAGCGTTAGCGCCAAGTAACTTA GTACCAGGTGTTGGCGCGTCGCCAGACAAGATGCTACAAGCACGCTTGTTTGCCTACGCCGATGCTCAGCGTTACCGTAT TGGTGCTAACTACAATCAGCTACCGGTTAACTGCCCACATGCAACAACGGCTAACCATCATCAGCGTGGCGGCGCAATGG CGGGAACACAATGCCCATTCTCAGGCAGCCAAACAGGCGCTGATGCGAGCAGCAACTATGGTCCAAACAGCAATAATGGC CTGCAAGACCAAGCACAGTTTGCCGAGCCACCACTGCGTTTAGATGGTGAAGCAGATCGCTACAGCCGTTATGACCAAGA TGACTTTAGCCAAGCGGGAGACTTATATCGCCTATTACCAGAAGATGAGAAGGCAAGATTGATTGCTAATATCGTCGGTA GCCTGAGTGTGGTGAGTGAAGCGACACAAGCTAAGATGGTTGAGCACTTCACCGCTGCCGATAGCGATTACGGTCAGCGA GTAAAACAAGCGTTAAAAGGCTAA
Upstream 100 bases:
>100_bases GCGTTGCCATAGCGTATCGCAGATAGAGGATAAACCATGGCTACCCTATTTGATTTAATCGAAACTTGGCTAGAATCACG CCAAGATTGAGGAGTAATGT
Downstream 100 bases:
>100_bases GAAAGTTCCTAGGGACTGAATAAGCATAAATGAAAGGCAAAACAGCTAATACTGTTTTGCCTTTTTTGTGCACTATTTAT GCTAGAACCTAGAACCTAGA
Product: catalase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 487; Mature: 486
Protein sequence:
>487_residues MSQQNRVLTAQNGAPISDDQNSLSAGERGPLLLQDWHLIEKLAHFNRERIPERIVHAKGTGVYGKFTLTRDMSDYTIADH FNGVGKETETFVRFSTVGGEMGSADAERDPRGFGLRFYTERGNHDIVGNNTPTFFLRDGIKFPDFIHTQKRNPQTNLKDP HAMWDFWALNPEAMHQVTVLMSDRGIPANYRQMHGFGSHTFSFWNAKGERFWVKFHFKTKQGIANLTAEQADILKGIDPD SSQRDMVAAINDGNFPKWAVKVQIMPEAEANTYKINPFDLTKVWPHADYPLIEIGELELNRMPQNYFAEVEQVALAPSNL VPGVGASPDKMLQARLFAYADAQRYRIGANYNQLPVNCPHATTANHHQRGGAMAGTQCPFSGSQTGADASSNYGPNSNNG LQDQAQFAEPPLRLDGEADRYSRYDQDDFSQAGDLYRLLPEDEKARLIANIVGSLSVVSEATQAKMVEHFTAADSDYGQR VKQALKG
Sequences:
>Translated_487_residues MSQQNRVLTAQNGAPISDDQNSLSAGERGPLLLQDWHLIEKLAHFNRERIPERIVHAKGTGVYGKFTLTRDMSDYTIADH FNGVGKETETFVRFSTVGGEMGSADAERDPRGFGLRFYTERGNHDIVGNNTPTFFLRDGIKFPDFIHTQKRNPQTNLKDP HAMWDFWALNPEAMHQVTVLMSDRGIPANYRQMHGFGSHTFSFWNAKGERFWVKFHFKTKQGIANLTAEQADILKGIDPD SSQRDMVAAINDGNFPKWAVKVQIMPEAEANTYKINPFDLTKVWPHADYPLIEIGELELNRMPQNYFAEVEQVALAPSNL VPGVGASPDKMLQARLFAYADAQRYRIGANYNQLPVNCPHATTANHHQRGGAMAGTQCPFSGSQTGADASSNYGPNSNNG LQDQAQFAEPPLRLDGEADRYSRYDQDDFSQAGDLYRLLPEDEKARLIANIVGSLSVVSEATQAKMVEHFTAADSDYGQR VKQALKG >Mature_486_residues SQQNRVLTAQNGAPISDDQNSLSAGERGPLLLQDWHLIEKLAHFNRERIPERIVHAKGTGVYGKFTLTRDMSDYTIADHF NGVGKETETFVRFSTVGGEMGSADAERDPRGFGLRFYTERGNHDIVGNNTPTFFLRDGIKFPDFIHTQKRNPQTNLKDPH AMWDFWALNPEAMHQVTVLMSDRGIPANYRQMHGFGSHTFSFWNAKGERFWVKFHFKTKQGIANLTAEQADILKGIDPDS SQRDMVAAINDGNFPKWAVKVQIMPEAEANTYKINPFDLTKVWPHADYPLIEIGELELNRMPQNYFAEVEQVALAPSNLV PGVGASPDKMLQARLFAYADAQRYRIGANYNQLPVNCPHATTANHHQRGGAMAGTQCPFSGSQTGADASSNYGPNSNNGL QDQAQFAEPPLRLDGEADRYSRYDQDDFSQAGDLYRLLPEDEKARLIANIVGSLSVVSEATQAKMVEHFTAADSDYGQRV KQALKG
Specific function: Decomposes hydrogen peroxide into water and oxygen; serves to protect cells from the toxic effects of hydrogen peroxide [H]
COG id: COG0753
COG function: function code P; Catalase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the catalase family [H]
Homologues:
Organism=Homo sapiens, GI4557014, Length=485, Percent_Identity=50.9278350515464, Blast_Score=503, Evalue=1e-142, Organism=Escherichia coli, GI48994891, Length=401, Percent_Identity=44.139650872818, Blast_Score=336, Evalue=2e-93, Organism=Caenorhabditis elegans, GI71998444, Length=482, Percent_Identity=50.207468879668, Blast_Score=503, Evalue=1e-143, Organism=Caenorhabditis elegans, GI25147792, Length=481, Percent_Identity=49.4802494802495, Blast_Score=491, Evalue=1e-139, Organism=Caenorhabditis elegans, GI25151141, Length=485, Percent_Identity=49.2783505154639, Blast_Score=491, Evalue=1e-139, Organism=Saccharomyces cerevisiae, GI6320462, Length=490, Percent_Identity=45.3061224489796, Blast_Score=409, Evalue=1e-115, Organism=Saccharomyces cerevisiae, GI6321525, Length=531, Percent_Identity=37.8531073446328, Blast_Score=362, Evalue=1e-101, Organism=Drosophila melanogaster, GI17981717, Length=482, Percent_Identity=50.6224066390041, Blast_Score=493, Evalue=1e-139, Organism=Drosophila melanogaster, GI19920968, Length=488, Percent_Identity=44.4672131147541, Blast_Score=439, Evalue=1e-123,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002226 - InterPro: IPR020835 - InterPro: IPR010582 - InterPro: IPR018028 - InterPro: IPR011614 [H]
Pfam domain/function: PF00199 Catalase; PF06628 Catalase-rel [H]
EC number: =1.11.1.6 [H]
Molecular weight: Translated: 54387; Mature: 54256
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: PS00437 CATALASE_1 ; PS00438 CATALASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQQNRVLTAQNGAPISDDQNSLSAGERGPLLLQDWHLIEKLAHFNRERIPERIVHAKGT CCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHCCCC GVYGKFTLTRDMSDYTIADHFNGVGKETETFVRFSTVGGEMGSADAERDPRGFGLRFYTE CEEEEEEEECCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEE RGNHDIVGNNTPTFFLRDGIKFPDFIHTQKRNPQTNLKDPHAMWDFWALNPEAMHQVTVL CCCCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCHHHEEECCCHHHHHEEEEE MSDRGIPANYRQMHGFGSHTFSFWNAKGERFWVKFHFKTKQGIANLTAEQADILKGIDPD EECCCCCCCHHHHCCCCCCEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCC SSQRDMVAAINDGNFPKWAVKVQIMPEAEANTYKINPFDLTKVWPHADYPLIEIGELELN CCCCCEEEEECCCCCCEEEEEEEEEECCCCCEEEECCEECCEECCCCCCCEEEECCCHHC RMPQNYFAEVEQVALAPSNLVPGVGASPDKMLQARLFAYADAQRYRIGANYNQLPVNCPH CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC ATTANHHQRGGAMAGTQCPFSGSQTGADASSNYGPNSNNGLQDQAQFAEPPLRLDGEADR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHH YSRYDQDDFSQAGDLYRLLPEDEKARLIANIVGSLSVVSEATQAKMVEHFTAADSDYGQR HHCCCCHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH VKQALKG HHHHHCC >Mature Secondary Structure SQQNRVLTAQNGAPISDDQNSLSAGERGPLLLQDWHLIEKLAHFNRERIPERIVHAKGT CCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCHHHHHHHHHHCCCC GVYGKFTLTRDMSDYTIADHFNGVGKETETFVRFSTVGGEMGSADAERDPRGFGLRFYTE CEEEEEEEECCCCCCCHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEE RGNHDIVGNNTPTFFLRDGIKFPDFIHTQKRNPQTNLKDPHAMWDFWALNPEAMHQVTVL CCCCCCCCCCCCEEEEECCCCCCHHHHCCCCCCCCCCCCCCHHHEEECCCHHHHHEEEEE MSDRGIPANYRQMHGFGSHTFSFWNAKGERFWVKFHFKTKQGIANLTAEQADILKGIDPD EECCCCCCCHHHHCCCCCCEEEEECCCCCEEEEEEEEECCCCHHHHHHHHHHHHHCCCCC SSQRDMVAAINDGNFPKWAVKVQIMPEAEANTYKINPFDLTKVWPHADYPLIEIGELELN CCCCCEEEEECCCCCCEEEEEEEEEECCCCCEEEECCEECCEECCCCCCCEEEECCCHHC RMPQNYFAEVEQVALAPSNLVPGVGASPDKMLQARLFAYADAQRYRIGANYNQLPVNCPH CCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCC ATTANHHQRGGAMAGTQCPFSGSQTGADASSNYGPNSNNGLQDQAQFAEPPLRLDGEADR CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHH YSRYDQDDFSQAGDLYRLLPEDEKARLIANIVGSLSVVSEATQAKMVEHFTAADSDYGQR HHCCCCHHHHHHCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH VKQALKG HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA