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The map label for this gene is yhjC [C]

Identifier: 157960277

GI number: 157960277

Start: 556787

End: 557707

Strand: Reverse

Name: yhjC [C]

Synonym: Spea_0448

Alternate gene names: 157960277

Gene position: 557707-556787 (Counterclockwise)

Preceding gene: 157960281

Following gene: 157960276

Centisome position: 10.78

GC content: 46.36

Gene sequence:

>921_bases
ATGGACCATCTAAGGCATATGGCGATATTTAAACAGATAGTCGATAGTGGCTCTATCAGTGCTGCTGCAGATAAACTCGA
TCTGTCTAAGTCTGTTGTCAGTCATCACCTTAAGTCTTTAGAACTCGCTGTGGGTGTACAGCTGCTGCATAGAACCACCC
GCAGGCAGCAACTCACTCCGGCAGGTAAAGACTTTTATCAGCGCTGCCGTGAACTTGGCGATATATCCGCCCTCGCCTGG
CAACAGGCAAGAGAAGCGGCTGATAAGTTGGCAGGGCCTATTAAGATAAGTTCCCCCCACGCCTTGGTTGATAGCATCAT
AGCGCCAGCTATTGCCAGCCTTTGCACTAATAACCCTATGATAAGACCACATATTCAAATGCAAGATCGCCGTATCGATC
TGCTTGGGCAAGATATTGATCTCGCGGTGCGTGTAGGTAAATTGGCATCCAGTAGTTTAATACAGCGCAAAGTGGGACAA
TTTAGGGACGTGCTTTGTGCCAGCCCAGTCTTTATCAAACAAAATACAAGATTGATAAAAGCGGAGGATTGGGTTTCACT
GGATTACATAGCCAACTCTTGGCAAGGGCAAAGTATCCAGCACTCGCTACAATCAAAAGCCAGTTCAAAAGGCAATGCAA
AAGCACCGAACGAGTTAAGCTTAAACTTCAACGCTAATCGTTATGCAGACACCTCATCTGCGGTGCTTTCCTTGGCTAAA
GCTGGCTTAGGTATCGCGTTATTACCCGACTTTGTGTTTGAGCAAGAGCCATTACTCGTTGAGTTATTACCGACGCACCA
ATGCCCACTAAATAATGTTTATGCACTGCATGACTTTGGCCGCACCCCGCCACTTCTTATCAAAAAAACCATCGATGCAC
TGCTTGATTCTTTTCTGTTTCAAGGACAAACCGCTCGCTAA

Upstream 100 bases:

>100_bases
TTAGCATTGATAACCTAGGTAAAGCAGCAATCACTGTTCCAATTAATAGGACAATGGTTTAAACATTTTAACCACGAGCT
AAGCTCAACAAGGTAAAAAC

Downstream 100 bases:

>100_bases
AGGTTCCCGCTACAAGGATTAAGGCCATTAGTTACAGCTATAAACAAAATTAATCGCTGCGATTAGCATTTTTAAAGGCC
TGTACCTGATTTATTTCGAT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MDHLRHMAIFKQIVDSGSISAAADKLDLSKSVVSHHLKSLELAVGVQLLHRTTRRQQLTPAGKDFYQRCRELGDISALAW
QQAREAADKLAGPIKISSPHALVDSIIAPAIASLCTNNPMIRPHIQMQDRRIDLLGQDIDLAVRVGKLASSSLIQRKVGQ
FRDVLCASPVFIKQNTRLIKAEDWVSLDYIANSWQGQSIQHSLQSKASSKGNAKAPNELSLNFNANRYADTSSAVLSLAK
AGLGIALLPDFVFEQEPLLVELLPTHQCPLNNVYALHDFGRTPPLLIKKTIDALLDSFLFQGQTAR

Sequences:

>Translated_306_residues
MDHLRHMAIFKQIVDSGSISAAADKLDLSKSVVSHHLKSLELAVGVQLLHRTTRRQQLTPAGKDFYQRCRELGDISALAW
QQAREAADKLAGPIKISSPHALVDSIIAPAIASLCTNNPMIRPHIQMQDRRIDLLGQDIDLAVRVGKLASSSLIQRKVGQ
FRDVLCASPVFIKQNTRLIKAEDWVSLDYIANSWQGQSIQHSLQSKASSKGNAKAPNELSLNFNANRYADTSSAVLSLAK
AGLGIALLPDFVFEQEPLLVELLPTHQCPLNNVYALHDFGRTPPLLIKKTIDALLDSFLFQGQTAR
>Mature_306_residues
MDHLRHMAIFKQIVDSGSISAAADKLDLSKSVVSHHLKSLELAVGVQLLHRTTRRQQLTPAGKDFYQRCRELGDISALAW
QQAREAADKLAGPIKISSPHALVDSIIAPAIASLCTNNPMIRPHIQMQDRRIDLLGQDIDLAVRVGKLASSSLIQRKVGQ
FRDVLCASPVFIKQNTRLIKAEDWVSLDYIANSWQGQSIQHSLQSKASSKGNAKAPNELSLNFNANRYADTSSAVLSLAK
AGLGIALLPDFVFEQEPLLVELLPTHQCPLNNVYALHDFGRTPPLLIKKTIDALLDSFLFQGQTAR

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=277, Percent_Identity=28.8808664259928, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1789639, Length=308, Percent_Identity=27.9220779220779, Blast_Score=103, Evalue=2e-23,
Organism=Escherichia coli, GI1786401, Length=300, Percent_Identity=27, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789440, Length=276, Percent_Identity=25, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI87081978, Length=173, Percent_Identity=30.635838150289, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787128, Length=157, Percent_Identity=26.1146496815287, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1789173, Length=279, Percent_Identity=25.4480286738351, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33680; Mature: 33680

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHLRHMAIFKQIVDSGSISAAADKLDLSKSVVSHHLKSLELAVGVQLLHRTTRRQQLTP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AGKDFYQRCRELGDISALAWQQAREAADKLAGPIKISSPHALVDSIIAPAIASLCTNNPM
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCC
IRPHIQMQDRRIDLLGQDIDLAVRVGKLASSSLIQRKVGQFRDVLCASPVFIKQNTRLIK
CCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEE
AEDWVSLDYIANSWQGQSIQHSLQSKASSKGNAKAPNELSLNFNANRYADTSSAVLSLAK
CCCCEEHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
AGLGIALLPDFVFEQEPLLVELLPTHQCPLNNVYALHDFGRTPPLLIKKTIDALLDSFLF
HCCCCEEHHHHHHCCCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
QGQTAR
CCCCCC
>Mature Secondary Structure
MDHLRHMAIFKQIVDSGSISAAADKLDLSKSVVSHHLKSLELAVGVQLLHRTTRRQQLTP
CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
AGKDFYQRCRELGDISALAWQQAREAADKLAGPIKISSPHALVDSIIAPAIASLCTNNPM
CCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHCCCCC
IRPHIQMQDRRIDLLGQDIDLAVRVGKLASSSLIQRKVGQFRDVLCASPVFIKQNTRLIK
CCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEE
AEDWVSLDYIANSWQGQSIQHSLQSKASSKGNAKAPNELSLNFNANRYADTSSAVLSLAK
CCCCEEHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
AGLGIALLPDFVFEQEPLLVELLPTHQCPLNNVYALHDFGRTPPLLIKKTIDALLDSFLF
HCCCCEEHHHHHHCCCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
QGQTAR
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]