| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
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The map label for this gene is btuB [H]
Identifier: 157960233
GI number: 157960233
Start: 489235
End: 491925
Strand: Direct
Name: btuB [H]
Synonym: Spea_0404
Alternate gene names: 157960233
Gene position: 489235-491925 (Clockwise)
Preceding gene: 157960232
Following gene: 157960245
Centisome position: 9.45
GC content: 43.11
Gene sequence:
>2691_bases ATGAAGTTTAATAAAGTTGCTAAATTTATTAGCTTGGCGTGTGGTGGTGTAATGGCCCTCTCTGCGCCAGTCTATGCCGC GGAAACAGAGGAAGATAGTGTAGAGCGTATTGAGGTTACCGGTTCGCGTCTAAAGCGTGTTGATATGGAAGGTGCAACAC CTGTAACAACGATTACTGCTGAAGATATGGCTGTCGCTGGTTTCTCTACAGTAGGTGATGCGTTACGTTCATCGACATTG AACTCATTCGGTTCATATGGTGGCACGGCAAACAATAGCTGGTCTTCACAAGCAACAATTCAGCTTAAAGGCGCAAGTGC GAGTGACACCTTAGTTTTGCTAGACGGTCAGCGTATGGCTAAATCACCTGTTCTTGGTGGTGCTGCAGCAAACATTAATA CAATCCCAACGTCAGCTATTGAGCGTATCGAAATTCTATCTGATGGGGCATCAGCTATTTATGGTACTGATGCGGTAGCG GGTGTTGTAAACGTTATTTTGAAGAAAAGCTTCGAAGGTATCGAATTTAAAGCGCGTGCAGAAGAAACTGAAGCTGAAGG CGGTGATAACCACTCTTTCTCATTCACCGGTGGTTTAAATTCAGAAAATGGTAATCTTGTATTTACCATGGAGCACTACA AGAAAGATAAAATCTTGATGAGTGATCGCCCCTACACAGCTGCGCACGTGAGAGATGGCGAAGATCCAACTGATTTCCGT AGCTGGGTAGGCTTAAGTCAGACTGGTCGTACATTAGATATGGGACCAAATGGTGGTTGGGCATATCAAGCACCTTTTTC TAATACTGATCGTACATGTGCTGATGTTTATGGAGATAACTTCATAGGACCATTGTCTGACAGCAAGTATGCTGGTGAGA CAGCATGTGCATACAACTATACCAATGCTGCTGCACTCGATGTTGATCGTGAAAGAACCAACACCTTGATCAACTATGGC TACGATATTACTGACGATATTAAGCTTACTGCTCGTGCTTACTGGGCTGCAAATAAAACCATTGACCAATCAGCACCCGT GCCTGGTTATATCTATTTTCCAGATGCAATGCCAGCTTATACAACAGCTGAAGGTTTAGATTTAGTTGCAACACCAGAAG ATGCACGCATGCTATATCGTTATGATACAGCGGGTAACCGTGTGCGCGAAAACCATGACAACATGTATGACATTTTGATT GGTTTAGAAGGCACTACCGAATACGTAGATTGGGATTTTGCGGCAACTTATAACCGCTACGATAACTTCGTATGGGGTAC CGGTTACGAATTAAAAGGAGCGTCAACAGATCTAGTCGGAGCATGGGATGATGCGACCAATTCGTTTGTCGGTTGGGATC CGCGTGATCCAAATTCTGTAGCGCCAAGTGGCGGTATGGCTAACTTCGATATGCGTCAAACAGCCTCTTATGCTGAGTTG AGTGGTGGTGCTGGTTTTGATCTGTTTGAACTGGATTCTGGTACTGCAGCAATGTACGTTGGTGCATCATACCGTGAAGA GTCGTTAGACTCTAAAGTAGATGCATTATCTGAAGCCGGTTTGATAAAAGGTGCAAGTGGTGGTTCTGGTGGTGAAGGCG AACGTGATATTAAAGCAATTTTTGCTGAGATGACCATTCCTCTACTTGATAACCTAGAGCTAAACTTAGCTGCACGTTAC GATGATTACTCTGACTTTGGTGATACGTTTAACCCTCAGGTTTCTATCCGATATAACCTGTTTGAACCATTATTGCTTCG TGCATCTTGGGGAACTGGTTTTAAAGCACCAAGCTTATCGCAGTTAAACCAGACACCAAGTGAAGGTTGGAACGACATAA CGAACTATATGCAATGTTATGAGGAAACGGGTGTTGTTGATGGTTGTACGATTGAAAATAGCATTCCAGTTTATGTTGAT AAGAATGAAAACTTAGGTCCTGAAGAGTCTGAAAGCTATAACCTAGGTATGGTTTGGGATATCACAGATAACATCAACAT GACTGTTGACTACTGGGTGCTTGATACTGACAACCTAATAGGTCAGATTGGCAATGATGAGCTAGTCTATACGCAAGCTA AACTCTGGGAAGCGGCCGACGCAATGGGCGTTGCACGTCCAGATATTTCAGTGGTTTACCCAGGGACTAGCATCTCTCAG AACAGTTCAGGTAAGCTAACAGAGATGGACAATGTGCTGCAAAACTTTGGTACTGCTGAGCGTGAAGGTATTGATACCAA TATTGCTGCAACATTCGAAACTGGAGTGGGAGAGTTTAAACTTGGTCTCGCTTGGTCTCACTATATTAAGTATACCGATA GTGCGCCAATCGGTGGTGAACTAGTGGTATCTCGTAACTGGGCGGGTTCATCAGGAACACCTGATGATCGTGTAAGCTTT AGCACTAATTACATTTTTGCCGATGACCATAGCTTGTTCTATAAAGCTGATTACATTGATGGTCAAACAACGTATGACAT CAATGATGATGGTTCAAAGTATGAGATAGATTCATTGATATATCATACTATTACATACTCATACATGATGCCTTGGAACA ACTCTATCAGTATCGGTGTAAACAACCTAACTGATGAAGAGCCTGCATTTGAGCAAAATGGTGATTACAGTTCGAGCTTA TATGACATTATGGGTCGCAGCTACTGGGTTTCATTCTCTCAAAGTTTCTAA
Upstream 100 bases:
>100_bases ATATGTTGCCGCTTTGTTTTGTTGTTGTGGTTTGTTTGGTTTTGAATACGCCTCTTTAAGCAATAGCACTAATAAAAATT ATATTCTTGGGAGATGGAAG
Downstream 100 bases:
>100_bases GCTATGATTGATAAGTTTTAGTTGACCTACGAAAAAAGGCACTCAATGAGTGCCTTTTCTTTTTATATGACAGCTGACTA CTTTAAAATGCCTAGTAAAT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 896; Mature: 896
Protein sequence:
>896_residues MKFNKVAKFISLACGGVMALSAPVYAAETEEDSVERIEVTGSRLKRVDMEGATPVTTITAEDMAVAGFSTVGDALRSSTL NSFGSYGGTANNSWSSQATIQLKGASASDTLVLLDGQRMAKSPVLGGAAANINTIPTSAIERIEILSDGASAIYGTDAVA GVVNVILKKSFEGIEFKARAEETEAEGGDNHSFSFTGGLNSENGNLVFTMEHYKKDKILMSDRPYTAAHVRDGEDPTDFR SWVGLSQTGRTLDMGPNGGWAYQAPFSNTDRTCADVYGDNFIGPLSDSKYAGETACAYNYTNAAALDVDRERTNTLINYG YDITDDIKLTARAYWAANKTIDQSAPVPGYIYFPDAMPAYTTAEGLDLVATPEDARMLYRYDTAGNRVRENHDNMYDILI GLEGTTEYVDWDFAATYNRYDNFVWGTGYELKGASTDLVGAWDDATNSFVGWDPRDPNSVAPSGGMANFDMRQTASYAEL SGGAGFDLFELDSGTAAMYVGASYREESLDSKVDALSEAGLIKGASGGSGGEGERDIKAIFAEMTIPLLDNLELNLAARY DDYSDFGDTFNPQVSIRYNLFEPLLLRASWGTGFKAPSLSQLNQTPSEGWNDITNYMQCYEETGVVDGCTIENSIPVYVD KNENLGPEESESYNLGMVWDITDNINMTVDYWVLDTDNLIGQIGNDELVYTQAKLWEAADAMGVARPDISVVYPGTSISQ NSSGKLTEMDNVLQNFGTAEREGIDTNIAATFETGVGEFKLGLAWSHYIKYTDSAPIGGELVVSRNWAGSSGTPDDRVSF STNYIFADDHSLFYKADYIDGQTTYDINDDGSKYEIDSLIYHTITYSYMMPWNNSISIGVNNLTDEEPAFEQNGDYSSSL YDIMGRSYWVSFSQSF
Sequences:
>Translated_896_residues MKFNKVAKFISLACGGVMALSAPVYAAETEEDSVERIEVTGSRLKRVDMEGATPVTTITAEDMAVAGFSTVGDALRSSTL NSFGSYGGTANNSWSSQATIQLKGASASDTLVLLDGQRMAKSPVLGGAAANINTIPTSAIERIEILSDGASAIYGTDAVA GVVNVILKKSFEGIEFKARAEETEAEGGDNHSFSFTGGLNSENGNLVFTMEHYKKDKILMSDRPYTAAHVRDGEDPTDFR SWVGLSQTGRTLDMGPNGGWAYQAPFSNTDRTCADVYGDNFIGPLSDSKYAGETACAYNYTNAAALDVDRERTNTLINYG YDITDDIKLTARAYWAANKTIDQSAPVPGYIYFPDAMPAYTTAEGLDLVATPEDARMLYRYDTAGNRVRENHDNMYDILI GLEGTTEYVDWDFAATYNRYDNFVWGTGYELKGASTDLVGAWDDATNSFVGWDPRDPNSVAPSGGMANFDMRQTASYAEL SGGAGFDLFELDSGTAAMYVGASYREESLDSKVDALSEAGLIKGASGGSGGEGERDIKAIFAEMTIPLLDNLELNLAARY DDYSDFGDTFNPQVSIRYNLFEPLLLRASWGTGFKAPSLSQLNQTPSEGWNDITNYMQCYEETGVVDGCTIENSIPVYVD KNENLGPEESESYNLGMVWDITDNINMTVDYWVLDTDNLIGQIGNDELVYTQAKLWEAADAMGVARPDISVVYPGTSISQ NSSGKLTEMDNVLQNFGTAEREGIDTNIAATFETGVGEFKLGLAWSHYIKYTDSAPIGGELVVSRNWAGSSGTPDDRVSF STNYIFADDHSLFYKADYIDGQTTYDINDDGSKYEIDSLIYHTITYSYMMPWNNSISIGVNNLTDEEPAFEQNGDYSSSL YDIMGRSYWVSFSQSF >Mature_896_residues MKFNKVAKFISLACGGVMALSAPVYAAETEEDSVERIEVTGSRLKRVDMEGATPVTTITAEDMAVAGFSTVGDALRSSTL NSFGSYGGTANNSWSSQATIQLKGASASDTLVLLDGQRMAKSPVLGGAAANINTIPTSAIERIEILSDGASAIYGTDAVA GVVNVILKKSFEGIEFKARAEETEAEGGDNHSFSFTGGLNSENGNLVFTMEHYKKDKILMSDRPYTAAHVRDGEDPTDFR SWVGLSQTGRTLDMGPNGGWAYQAPFSNTDRTCADVYGDNFIGPLSDSKYAGETACAYNYTNAAALDVDRERTNTLINYG YDITDDIKLTARAYWAANKTIDQSAPVPGYIYFPDAMPAYTTAEGLDLVATPEDARMLYRYDTAGNRVRENHDNMYDILI GLEGTTEYVDWDFAATYNRYDNFVWGTGYELKGASTDLVGAWDDATNSFVGWDPRDPNSVAPSGGMANFDMRQTASYAEL SGGAGFDLFELDSGTAAMYVGASYREESLDSKVDALSEAGLIKGASGGSGGEGERDIKAIFAEMTIPLLDNLELNLAARY DDYSDFGDTFNPQVSIRYNLFEPLLLRASWGTGFKAPSLSQLNQTPSEGWNDITNYMQCYEETGVVDGCTIENSIPVYVD KNENLGPEESESYNLGMVWDITDNINMTVDYWVLDTDNLIGQIGNDELVYTQAKLWEAADAMGVARPDISVVYPGTSISQ NSSGKLTEMDNVLQNFGTAEREGIDTNIAATFETGVGEFKLGLAWSHYIKYTDSAPIGGELVVSRNWAGSSGTPDDRVSF STNYIFADDHSLFYKADYIDGQTTYDINDDGSKYEIDSLIYHTITYSYMMPWNNSISIGVNNLTDEEPAFEQNGDYSSSL YDIMGRSYWVSFSQSF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=162, Percent_Identity=29.6296296296296, Blast_Score=77, Evalue=6e-15, Organism=Escherichia coli, GI1788478, Length=167, Percent_Identity=28.1437125748503, Blast_Score=74, Evalue=3e-14,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 97710; Mature: 97710
Theoretical pI: Translated: 3.98; Mature: 3.98
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKFNKVAKFISLACGGVMALSAPVYAAETEEDSVERIEVTGSRLKRVDMEGATPVTTITA CCHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCEEEEECCHHHEEECCCCCCCEEEEEE EDMAVAGFSTVGDALRSSTLNSFGSYGGTANNSWSSQATIQLKGASASDTLVLLDGQRMA CCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCHHH KSPVLGGAAANINTIPTSAIERIEILSDGASAIYGTDAVAGVVNVILKKSFEGIEFKARA CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEECC EETEAEGGDNHSFSFTGGLNSENGNLVFTMEHYKKDKILMSDRPYTAAHVRDGEDPTDFR CCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCEEEECCCCCEEEEECCCCCHHHHH SWVGLSQTGRTLDMGPNGGWAYQAPFSNTDRTCADVYGDNFIGPLSDSKYAGETACAYNY HHCCCCCCCCEEEECCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEECC TNAAALDVDRERTNTLINYGYDITDDIKLTARAYWAANKTIDQSAPVPGYIYFPDAMPAY CCEEEEECCHHHCCEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCC TTAEGLDLVATPEDARMLYRYDTAGNRVRENHDNMYDILIGLEGTTEYVDWDFAATYNRY CCCCCCEEEECCCCCEEEEEECCCCCHHHHCCCCEEEEEEECCCCCEEECCCHHHHHHCC DNFVWGTGYELKGASTDLVGAWDDATNSFVGWDPRDPNSVAPSGGMANFDMRQTASYAEL CCCEECCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHC SGGAGFDLFELDSGTAAMYVGASYREESLDSKVDALSEAGLIKGASGGSGGEGERDIKAI CCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHH FAEMTIPLLDNLELNLAARYDDYSDFGDTFNPQVSIRYNLFEPLLLRASWGTGFKAPSLS HHHHHHHHHCCCEEEEEEECCCHHHCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCHH QLNQTPSEGWNDITNYMQCYEETGVVDGCTIENSIPVYVDKNENLGPEESESYNLGMVWD HHCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCEEEEE ITDNINMTVDYWVLDTDNLIGQIGNDELVYTQAKLWEAADAMGVARPDISVVYPGTSISQ ECCCCEEEEEEEEEECCHHHHCCCCCCEEEEHHHHHHHHHHCCCCCCCCEEEECCCCCCC NSSGKLTEMDNVLQNFGTAEREGIDTNIAATFETGVGEFKLGLAWSHYIKYTDSAPIGGE CCCCCCHHHHHHHHHCCCCHHCCCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCE LVVSRNWAGSSGTPDDRVSFSTNYIFADDHSLFYKADYIDGQTTYDINDDGSKYEIDSLI EEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCEEEEECCCCCEEEHHHHH YHTITYSYMMPWNNSISIGVNNLTDEEPAFEQNGDYSSSLYDIMGRSYWVSFSQSF EEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEEECCC >Mature Secondary Structure MKFNKVAKFISLACGGVMALSAPVYAAETEEDSVERIEVTGSRLKRVDMEGATPVTTITA CCHHHHHHHHHHHHCCCEEECCCEEEECCCCCCCEEEEECCHHHEEECCCCCCCEEEEEE EDMAVAGFSTVGDALRSSTLNSFGSYGGTANNSWSSQATIQLKGASASDTLVLLDGQRMA CCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCEEEEECCCHHH KSPVLGGAAANINTIPTSAIERIEILSDGASAIYGTDAVAGVVNVILKKSFEGIEFKARA CCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEECC EETEAEGGDNHSFSFTGGLNSENGNLVFTMEHYKKDKILMSDRPYTAAHVRDGEDPTDFR CCCCCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCEEEECCCCCEEEEECCCCCHHHHH SWVGLSQTGRTLDMGPNGGWAYQAPFSNTDRTCADVYGDNFIGPLSDSKYAGETACAYNY HHCCCCCCCCEEEECCCCCEEEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEEECC TNAAALDVDRERTNTLINYGYDITDDIKLTARAYWAANKTIDQSAPVPGYIYFPDAMPAY CCEEEEECCHHHCCEEEECCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEECCCCCCCC TTAEGLDLVATPEDARMLYRYDTAGNRVRENHDNMYDILIGLEGTTEYVDWDFAATYNRY CCCCCCEEEECCCCCEEEEEECCCCCHHHHCCCCEEEEEEECCCCCEEECCCHHHHHHCC DNFVWGTGYELKGASTDLVGAWDDATNSFVGWDPRDPNSVAPSGGMANFDMRQTASYAEL CCCEECCCEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCHHHC SGGAGFDLFELDSGTAAMYVGASYREESLDSKVDALSEAGLIKGASGGSGGEGERDIKAI CCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHHHHCCEEECCCCCCCCCCCHHHHHH FAEMTIPLLDNLELNLAARYDDYSDFGDTFNPQVSIRYNLFEPLLLRASWGTGFKAPSLS HHHHHHHHHCCCEEEEEEECCCHHHCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCHH QLNQTPSEGWNDITNYMQCYEETGVVDGCTIENSIPVYVDKNENLGPEESESYNLGMVWD HHCCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCEEEECCCCCCCCCCCCCCCEEEEE ITDNINMTVDYWVLDTDNLIGQIGNDELVYTQAKLWEAADAMGVARPDISVVYPGTSISQ ECCCCEEEEEEEEEECCHHHHCCCCCCEEEEHHHHHHHHHHCCCCCCCCEEEECCCCCCC NSSGKLTEMDNVLQNFGTAEREGIDTNIAATFETGVGEFKLGLAWSHYIKYTDSAPIGGE CCCCCCHHHHHHHHHCCCCHHCCCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCE LVVSRNWAGSSGTPDDRVSFSTNYIFADDHSLFYKADYIDGQTTYDINDDGSKYEIDSLI EEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCEEEEECCCCCEEEHHHHH YHTITYSYMMPWNNSISIGVNNLTDEEPAFEQNGDYSSSLYDIMGRSYWVSFSQSF EEEEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA