Click here to switch to the map view.

The map label for this gene is yidZ [H]

Identifier: 157960171

GI number: 157960171

Start: 387020

End: 388027

Strand: Direct

Name: yidZ [H]

Synonym: Spea_0342

Alternate gene names: 157960171

Gene position: 387020-388027 (Clockwise)

Preceding gene: 157960170

Following gene: 157960173

Centisome position: 7.48

GC content: 47.02

Gene sequence:

>1008_bases
ATGAATACCGATAGCGTATGTTTGCAAACCCTTTATGATATGACCTATAACTTGCGTCATTTGCAAAGGCCTATTGTGAA
ACAGTTAGATTTCAATTTACTCAGAGTGTTAGAAGTACTGCTTGAAGAGCAGAGTGTCACCTCCGCTGCGACGAGATTGC
ATTTGAGTCAGTCAGCGGTGAGTAAACAGCTGAGTAAGTTGAGAGAAACCTTCGATGACCAGCTATTTGAACGCACAGCC
TATGGATTGAAAGCCACCCCACGTGCTCTGCAGTTAGCCCCAGAGCTTCGCGAGGTACTGCAAAAGCTAGATCAATTTAC
CCGTCCTAGCACCTTTGAGCCCGCCGAGAGTCAGCGACGTTTTCGTATGCATATTGTTGAAACAGCTTATTCGCTGACTT
ACCCCTATTTTATGCCCAAACTGCTAAAACAGGCGCCGCAGGTGAGTATTAATGGCCATACTTGGTCGCATTCTAGTATG
GAACAGCTGCTGCGCTGTGAAATTGATATGGGCATCATCTGCCGTGAGTGGGATAAGCGCTCTTTACTGCACATGAACAA
CTTACCGGAAGAACTTGGCGCAGCAGAGTTGATTCGTGATTATCCTGTATGCCTGTTAAGACGTGATCACCCTGCGCTAA
AAGAGCCTTGGAACATAGACACTTTTCTTAAGTACCGCCATCTGCAGGTGGCCTTTGGTGGCTTGGAGCATTGGTTGCTC
GATGATGTGCTGCGCTTAGATCACCTGCAGCGTGATGTAGCGGTCAACATGACCGATTTTAATTGCGCAATGGATCTCTG
TGAAAACAGCGATCTTATCTTGTGCGCACCACGAAAATACATTCAGCAGATGATGGTCAACTATGATTTGGTATGCCTCG
ATGTGCCGGTGCATGTCGAGCCCGGAGCCTACGTGCTTGTTTGGCATAAACACTTTAATCTGGACCCGAGTCATAGCTGG
CTGCGTAACCTGATTATCGATGGTGTTCGTGATAATCGAAAAGACTAG

Upstream 100 bases:

>100_bases
CCCAAAATATATCTACATTGGTCTAGTGAATAGAAGCTTGTCGTTTGTTAATTGGTGCTATCTAAAGACAGACTAACGCG
GGGGGATTAGCGCGGTTAGA

Downstream 100 bases:

>100_bases
CCACAACAGATTTCAAAAGATAAGAATGGACCACAGAGGACACGAAGAAAAGCAATCCCGAGCTTTTTCTCTTCTTCGTG
TCCTCTGTGTAGCAAACGGA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MNTDSVCLQTLYDMTYNLRHLQRPIVKQLDFNLLRVLEVLLEEQSVTSAATRLHLSQSAVSKQLSKLRETFDDQLFERTA
YGLKATPRALQLAPELREVLQKLDQFTRPSTFEPAESQRRFRMHIVETAYSLTYPYFMPKLLKQAPQVSINGHTWSHSSM
EQLLRCEIDMGIICREWDKRSLLHMNNLPEELGAAELIRDYPVCLLRRDHPALKEPWNIDTFLKYRHLQVAFGGLEHWLL
DDVLRLDHLQRDVAVNMTDFNCAMDLCENSDLILCAPRKYIQQMMVNYDLVCLDVPVHVEPGAYVLVWHKHFNLDPSHSW
LRNLIIDGVRDNRKD

Sequences:

>Translated_335_residues
MNTDSVCLQTLYDMTYNLRHLQRPIVKQLDFNLLRVLEVLLEEQSVTSAATRLHLSQSAVSKQLSKLRETFDDQLFERTA
YGLKATPRALQLAPELREVLQKLDQFTRPSTFEPAESQRRFRMHIVETAYSLTYPYFMPKLLKQAPQVSINGHTWSHSSM
EQLLRCEIDMGIICREWDKRSLLHMNNLPEELGAAELIRDYPVCLLRRDHPALKEPWNIDTFLKYRHLQVAFGGLEHWLL
DDVLRLDHLQRDVAVNMTDFNCAMDLCENSDLILCAPRKYIQQMMVNYDLVCLDVPVHVEPGAYVLVWHKHFNLDPSHSW
LRNLIIDGVRDNRKD
>Mature_335_residues
MNTDSVCLQTLYDMTYNLRHLQRPIVKQLDFNLLRVLEVLLEEQSVTSAATRLHLSQSAVSKQLSKLRETFDDQLFERTA
YGLKATPRALQLAPELREVLQKLDQFTRPSTFEPAESQRRFRMHIVETAYSLTYPYFMPKLLKQAPQVSINGHTWSHSSM
EQLLRCEIDMGIICREWDKRSLLHMNNLPEELGAAELIRDYPVCLLRRDHPALKEPWNIDTFLKYRHLQVAFGGLEHWLL
DDVLRLDHLQRDVAVNMTDFNCAMDLCENSDLILCAPRKYIQQMMVNYDLVCLDVPVHVEPGAYVLVWHKHFNLDPSHSW
LRNLIIDGVRDNRKD

Specific function: Involved in anaerobic NO protection [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790147, Length=303, Percent_Identity=33.003300330033, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI87081684, Length=310, Percent_Identity=25.1612903225806, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI145693105, Length=245, Percent_Identity=24.0816326530612, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 39241; Mature: 39241

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTDSVCLQTLYDMTYNLRHLQRPIVKQLDFNLLRVLEVLLEEQSVTSAATRLHLSQSAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKQLSKLRETFDDQLFERTAYGLKATPRALQLAPELREVLQKLDQFTRPSTFEPAESQRR
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
FRMHIVETAYSLTYPYFMPKLLKQAPQVSINGHTWSHSSMEQLLRCEIDMGIICREWDKR
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCEECCCCCH
SLLHMNNLPEELGAAELIRDYPVCLLRRDHPALKEPWNIDTFLKYRHLQVAFGGLEHWLL
HHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DDVLRLDHLQRDVAVNMTDFNCAMDLCENSDLILCAPRKYIQQMMVNYDLVCLDVPVHVE
HHHHHHHHHHHHHEECCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCEEEEECCEEEC
PGAYVLVWHKHFNLDPSHSWLRNLIIDGVRDNRKD
CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNTDSVCLQTLYDMTYNLRHLQRPIVKQLDFNLLRVLEVLLEEQSVTSAATRLHLSQSAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SKQLSKLRETFDDQLFERTAYGLKATPRALQLAPELREVLQKLDQFTRPSTFEPAESQRR
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
FRMHIVETAYSLTYPYFMPKLLKQAPQVSINGHTWSHSSMEQLLRCEIDMGIICREWDKR
HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHCCCCCEECCCCCH
SLLHMNNLPEELGAAELIRDYPVCLLRRDHPALKEPWNIDTFLKYRHLQVAFGGLEHWLL
HHHHHCCCHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
DDVLRLDHLQRDVAVNMTDFNCAMDLCENSDLILCAPRKYIQQMMVNYDLVCLDVPVHVE
HHHHHHHHHHHHHEECCCHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCEEEEECCEEEC
PGAYVLVWHKHFNLDPSHSWLRNLIIDGVRDNRKD
CCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA