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The map label for this gene is ywbI [H]

Identifier: 157960170

GI number: 157960170

Start: 385905

End: 386753

Strand: Direct

Name: ywbI [H]

Synonym: Spea_0341

Alternate gene names: 157960170

Gene position: 385905-386753 (Clockwise)

Preceding gene: 157960166

Following gene: 157960171

Centisome position: 7.46

GC content: 38.16

Gene sequence:

>849_bases
ATGATTAATAACACAACAGTTTATTGTTTCTATTACTCCGCTAAGTTTTCATCATTTTCTAAAGCAGCAAGCTTTTTAAA
AATGACTCAACCTAGTGTTAGCTCGAGTATTATCGCTCTAGAGAAAAAAATTGGCGCGAAACTGTTTGAAAGAGAGAGTC
GCGGAGTGAGGTTGACCGACCGCGGTCATGAAATCTACAAGAAAGCGGAAGACGTTATCATGTCGATGAATGAACTGGAG
TCGGCACTTCAGCAGGTCAATAGAAAGTCAGTCATTAAAATAGCGACTCAGCCTAGACTCTATGAGAAGTACTTGTCAGC
CAAGTTAACCAATGACTTTATTGAAGAGTTTTTCGTTCAGATCAATACGGGCGAGTTGGCTACAATTAAAGGCTGGATGG
ATTCGGGGGAAGTTGATGTGGTTATCACCGAAGGCATATTTGATGACCACCCTATATTTGAGCATTTTACCGAACTAGAC
AATTTAAAGTTTTTTTGGGCTAAAAAAATTGGCATAGAGTTCGCTACACCTGTCCCTACATTCGTACATTCTGATATATG
GAACCATTGGCATGATTTAAGCGTCTGTATGTATAACAATCCAGAGTTTAAAAAGATCATGGTGATAGACACTCCAGATT
TTTCTTGTAAATTAATCGAACGTGGAATGGGGATTGGCTTATTACCTGAGCAGATTATTCTAAATAACGAAAATATTGAA
AAATGTGCAGGGCCAACGGCTGGCGATATTAATGGTCCGATTGCTATCTATGTGAATCAAGAACGTAAGTTAGAGTTACA
GAAAATAGGATTAATTGAAAAGATTATTTCAACAGGTGATGGTCGATAA

Upstream 100 bases:

>100_bases
ATTAATTAATGGTTTTTTAAATTATAAATATTAATAAAATAGCGTGCATTTGATTGCAGTCACACAAAGATAAGAATCTA
GAACTAGATCCCGAATAATT

Downstream 100 bases:

>100_bases
GCCTGAAAAACTTTAATGTCAATATTTTAGAAATGCTAGGTAGTGAGTGTGTTTTTGGTCACAATTATTCTATAGTCTGA
TTGAGAGCATTAATATATAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MINNTTVYCFYYSAKFSSFSKAASFLKMTQPSVSSSIIALEKKIGAKLFERESRGVRLTDRGHEIYKKAEDVIMSMNELE
SALQQVNRKSVIKIATQPRLYEKYLSAKLTNDFIEEFFVQINTGELATIKGWMDSGEVDVVITEGIFDDHPIFEHFTELD
NLKFFWAKKIGIEFATPVPTFVHSDIWNHWHDLSVCMYNNPEFKKIMVIDTPDFSCKLIERGMGIGLLPEQIILNNENIE
KCAGPTAGDINGPIAIYVNQERKLELQKIGLIEKIISTGDGR

Sequences:

>Translated_282_residues
MINNTTVYCFYYSAKFSSFSKAASFLKMTQPSVSSSIIALEKKIGAKLFERESRGVRLTDRGHEIYKKAEDVIMSMNELE
SALQQVNRKSVIKIATQPRLYEKYLSAKLTNDFIEEFFVQINTGELATIKGWMDSGEVDVVITEGIFDDHPIFEHFTELD
NLKFFWAKKIGIEFATPVPTFVHSDIWNHWHDLSVCMYNNPEFKKIMVIDTPDFSCKLIERGMGIGLLPEQIILNNENIE
KCAGPTAGDINGPIAIYVNQERKLELQKIGLIEKIISTGDGR
>Mature_282_residues
MINNTTVYCFYYSAKFSSFSKAASFLKMTQPSVSSSIIALEKKIGAKLFERESRGVRLTDRGHEIYKKAEDVIMSMNELE
SALQQVNRKSVIKIATQPRLYEKYLSAKLTNDFIEEFFVQINTGELATIKGWMDSGEVDVVITEGIFDDHPIFEHFTELD
NLKFFWAKKIGIEFATPVPTFVHSDIWNHWHDLSVCMYNNPEFKKIMVIDTPDFSCKLIERGMGIGLLPEQIILNNENIE
KCAGPTAGDINGPIAIYVNQERKLELQKIGLIEKIISTGDGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=76, Percent_Identity=40.7894736842105, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32092; Mature: 32092

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINNTTVYCFYYSAKFSSFSKAASFLKMTQPSVSSSIIALEKKIGAKLFERESRGVRLTD
CCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEC
RGHEIYKKAEDVIMSMNELESALQQVNRKSVIKIATQPRLYEKYLSAKLTNDFIEEFFVQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHEE
INTGELATIKGWMDSGEVDVVITEGIFDDHPIFEHFTELDNLKFFWAKKIGIEFATPVPT
ECCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHCCCCEECCCCCH
FVHSDIWNHWHDLSVCMYNNPEFKKIMVIDTPDFSCKLIERGMGIGLLPEQIILNNENIE
HHHHHHHHHHCCEEEEEECCCCCEEEEEEECCCCCHHHHHCCCCCCCCCHHEEECCCCHH
KCAGPTAGDINGPIAIYVNQERKLELQKIGLIEKIISTGDGR
HHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MINNTTVYCFYYSAKFSSFSKAASFLKMTQPSVSSSIIALEKKIGAKLFERESRGVRLTD
CCCCCEEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEC
RGHEIYKKAEDVIMSMNELESALQQVNRKSVIKIATQPRLYEKYLSAKLTNDFIEEFFVQ
CCHHHHHHHHHHHHHHHHHHHHHHHCCHHCEEEEECCCHHHHHHHHHHHHHHHHHHHHEE
INTGELATIKGWMDSGEVDVVITEGIFDDHPIFEHFTELDNLKFFWAKKIGIEFATPVPT
ECCCCEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEEHCCCCEECCCCCH
FVHSDIWNHWHDLSVCMYNNPEFKKIMVIDTPDFSCKLIERGMGIGLLPEQIILNNENIE
HHHHHHHHHHCCEEEEEECCCCCEEEEEEECCCCCHHHHHCCCCCCCCCHHEEECCCCHH
KCAGPTAGDINGPIAIYVNQERKLELQKIGLIEKIISTGDGR
HHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934828; 9384377 [H]