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The map label for this gene is ccmF [H]

Identifier: 157960047

GI number: 157960047

Start: 230915

End: 232894

Strand: Direct

Name: ccmF [H]

Synonym: Spea_0218

Alternate gene names: 157960047

Gene position: 230915-232894 (Clockwise)

Preceding gene: 157960045

Following gene: 157960048

Centisome position: 4.46

GC content: 46.11

Gene sequence:

>1980_bases
ATGATCCCAGAATTAGGACACTTTTCGCTGATTATCGGCCTGGCATTCGCCATGCTGTTAGCCATCGTTCCTTTAGTAGG
TGTAGCTCGTAAAGACCAATACCTAGTGCGCTATGCTTGGCCACTAAGTTACGGCATGTTCTTCTTTATTCTCTTCTCTG
TTATTGCGCTTGGCTATAGCTTCGCAGTCGATGACTTCTCTGTAGCTTATGTAGCACATCATTCCAACTCTGAATTGCCA
ATCTTTTTTAAGATAGCTGCCGTATGGGGTGGGCATGAAGGTTCATTGCTATTCTGGGTATTCTCATTAGCGGCTTGGGC
TGCAGCGGTTGCGCTATTTAGTAAGGGCTTAGAAGAAGTCTTTACTGCACGAGTGCTGTCGGTGTTAGCAATGATCTTAA
TCGGCTTTACGCTATTTATGTTGCTGACCTCTAGCCCATTTGAGCGTTTATTCCCAATCCCGATGGAAGGTCGTGACCTT
AACCCAATGTTGCAAGACGTTGGATTGATTTTCCACCCTCCAATGTTGTACCTAGGTTATGTTGGCTTCTCTGTCAGTTT
TGCATTCGCAATTGCTGCTCTTATGAGTGGACGACTAGACTCTGCATGGGCTCGTTGGAGTCGTCCTTGGACACTAGCAG
CTTGGGTATTCCTAACTGGCGGTATCTCACTAGGTTCTTGGTGGGCATATTACGAACTCGGTTGGGGTGGTTGGTGGTTC
TGGGATCCAGTTGAAAACGCCTCTTTTATGCCTTGGTTGATTGGTACAGCTCTACTTCACTCGTTAATCGTAACCGAGAA
GCGTGGTGCATTCCGTAACTGGACCGTTCTACTTTCAATCTTTGCTTTCTCATTAAGTTTACTTGGTACCTTTATTGTTC
GTTCTGGCGTGTTAACTTCGGTTCACTCGTTCGCTGCGGATCCAAGTCGAGGTATGTTCATCCTATTGCTACTCGGTTTA
GCAATTGGTGGCTCACTCACACTATTCGCTTTCAGAGCGAGTGAGATGCGTAGCCCAGCACGTTTTGAGCTGAAATCAAA
AGAGACCATGCTACTGGTATGTAACCTGTTGTTAACGGTCGCTTGTGGTACTGTTTTACTCGGTACTCTTTACCCGCTGC
TAATCGATGCACTGGGTATGGGTAAGATCTCTGTAGGACCTCCATACTTTAACGCCGTATTTGTTCCAATCGTTCTTGTA
CTATTTGGCTTTATGGGTATAGGTCCAATTATCCGCTGGAAGAAATCTAAAGCGGGTGAGCTTAAGCGTCAGCTTATTAT
CCCTGCAGTGATTTCTGCAGTCGTTGGTCTAGCTGCGCCATTTATTGCCGGCGGTGAGTTTAACGCTTGGGTAGTATTTG
GTATTGCGGCAGCGGTATGGGTCACACTGATGACATTCCGTGCTGCTTATAACATGGTTAAGACTAAAGATGGCTCAATT
GATTTGACTCGTCTTGGACGTAGCCAGCTGGGCATGATCATTGCTCACCTTGGTATTGCGGTATCTGTTGTTGGTGCCAC
CATGGTTTCGAACTACTCATTAGAGAAGAGTGTCCGTATGGGCCCAGGCATTTCTCATGAGTTAGCGGGTTATACCTTTA
ACTATGTTGAAACCAAGAATGTTGTTGGTCCAAACTACACGGCTCAACAAGGTCAAATTGAGGTTTACCAGGGAGACGAT
TATGTAACCCTGCTTAGACCTGACCGTCGCCAATACAATGTTCGTACTATGGACATGACTGAGGCGGGTATCGACTGGGG
CCTATTCCGAGATCTTTACGTGACAATGGGTGATCCAATTAGCCGTACTGAGTACGCGGTGCGTATTAACTACAAGCCTT
TCGTTCGTTGGATCTGGTTTGGTTCAATCTTTATGATGGTTGGTGGTTTCTTCGCTGCTTCTGATAAGCGTTATCGCGTA
AAGGCTAAGAGCACAGAAAAGACAGCTGCTAAAGAAGCTGACAAGTTAGCTACGGCTTAA

Upstream 100 bases:

>100_bases
TGAGCTAAAATTTGTACCTTTTAATAGTGTTAATTGTAAACACGTATGCGATGATTCAGCAAAAGCTTAATCAAGCATGG
TTTAGGACTGAGGAAAACCC

Downstream 100 bases:

>100_bases
TTGGAAGTAGGGTTAGTATGAAAAAGTTAGTACTATTTATTCCACTCGTCGTGTTTTTAGGTATGGGAGTGTTCCTTTAT
AAGGGACTCTTCCTTAACCC

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CycK [H]

Number of amino acids: Translated: 659; Mature: 659

Protein sequence:

>659_residues
MIPELGHFSLIIGLAFAMLLAIVPLVGVARKDQYLVRYAWPLSYGMFFFILFSVIALGYSFAVDDFSVAYVAHHSNSELP
IFFKIAAVWGGHEGSLLFWVFSLAAWAAAVALFSKGLEEVFTARVLSVLAMILIGFTLFMLLTSSPFERLFPIPMEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
WDPVENASFMPWLIGTALLHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMRSPARFELKSKETMLLVCNLLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGIGPIIRWKKSKAGELKRQLIIPAVISAVVGLAAPFIAGGEFNAWVVFGIAAAVWVTLMTFRAAYNMVKTKDGSI
DLTRLGRSQLGMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGISHELAGYTFNYVETKNVVGPNYTAQQGQIEVYQGDD
YVTLLRPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISRTEYAVRINYKPFVRWIWFGSIFMMVGGFFAASDKRYRV
KAKSTEKTAAKEADKLATA

Sequences:

>Translated_659_residues
MIPELGHFSLIIGLAFAMLLAIVPLVGVARKDQYLVRYAWPLSYGMFFFILFSVIALGYSFAVDDFSVAYVAHHSNSELP
IFFKIAAVWGGHEGSLLFWVFSLAAWAAAVALFSKGLEEVFTARVLSVLAMILIGFTLFMLLTSSPFERLFPIPMEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
WDPVENASFMPWLIGTALLHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMRSPARFELKSKETMLLVCNLLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGIGPIIRWKKSKAGELKRQLIIPAVISAVVGLAAPFIAGGEFNAWVVFGIAAAVWVTLMTFRAAYNMVKTKDGSI
DLTRLGRSQLGMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGISHELAGYTFNYVETKNVVGPNYTAQQGQIEVYQGDD
YVTLLRPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISRTEYAVRINYKPFVRWIWFGSIFMMVGGFFAASDKRYRV
KAKSTEKTAAKEADKLATA
>Mature_659_residues
MIPELGHFSLIIGLAFAMLLAIVPLVGVARKDQYLVRYAWPLSYGMFFFILFSVIALGYSFAVDDFSVAYVAHHSNSELP
IFFKIAAVWGGHEGSLLFWVFSLAAWAAAVALFSKGLEEVFTARVLSVLAMILIGFTLFMLLTSSPFERLFPIPMEGRDL
NPMLQDVGLIFHPPMLYLGYVGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
WDPVENASFMPWLIGTALLHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTSVHSFAADPSRGMFILLLLGL
AIGGSLTLFAFRASEMRSPARFELKSKETMLLVCNLLLTVACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLV
LFGFMGIGPIIRWKKSKAGELKRQLIIPAVISAVVGLAAPFIAGGEFNAWVVFGIAAAVWVTLMTFRAAYNMVKTKDGSI
DLTRLGRSQLGMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGISHELAGYTFNYVETKNVVGPNYTAQQGQIEVYQGDD
YVTLLRPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPISRTEYAVRINYKPFVRWIWFGSIFMMVGGFFAASDKRYRV
KAKSTEKTAAKEADKLATA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=652, Percent_Identity=49.5398773006135, Blast_Score=605, Evalue=1e-174,
Organism=Escherichia coli, GI1790511, Length=588, Percent_Identity=37.2448979591837, Blast_Score=310, Evalue=2e-85,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 72890; Mature: 72890

Theoretical pI: Translated: 9.63; Mature: 9.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPELGHFSLIIGLAFAMLLAIVPLVGVARKDQYLVRYAWPLSYGMFFFILFSVIALGYS
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCHH
FAVDDFSVAYVAHHSNSELPIFFKIAAVWGGHEGSLLFWVFSLAAWAAAVALFSKGLEEV
HEECCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLSVLAMILIGFTLFMLLTSSPFERLFPIPMEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHHCCHHHHHHH
VGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEE
WDPVENASFMPWLIGTALLHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAIGGSLTLFAFRASEMRSPARFELKSKETMLLVCNLLLTV
HHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCEEECCCCHHHHHHHHHHHH
ACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGIGPIIRWKKSKAGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHHEECCCCHHH
LKRQLIIPAVISAVVGLAAPFIAGGEFNAWVVFGIAAAVWVTLMTFRAAYNMVKTKDGSI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
DLTRLGRSQLGMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGISHELAGYTFNYVETKN
EHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHCCCEEEEEEECC
VVGPNYTAQQGQIEVYQGDDYVTLLRPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPI
CCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCC
SRTEYAVRINYKPFVRWIWFGSIFMMVGGFFAASDKRYRVKAKSTEKTAAKEADKLATA
CCCEEEEEECCHHHHHHHHHHHHHHHHCCHHCCCCCEEEEEECCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MIPELGHFSLIIGLAFAMLLAIVPLVGVARKDQYLVRYAWPLSYGMFFFILFSVIALGYS
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCHH
FAVDDFSVAYVAHHSNSELPIFFKIAAVWGGHEGSLLFWVFSLAAWAAAVALFSKGLEEV
HEECCCEEEEEEECCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
FTARVLSVLAMILIGFTLFMLLTSSPFERLFPIPMEGRDLNPMLQDVGLIFHPPMLYLGY
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCHHHHHCCHHHCCHHHHHHH
VGFSVSFAFAIAALMSGRLDSAWARWSRPWTLAAWVFLTGGISLGSWWAYYELGWGGWWF
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCCEEE
WDPVENASFMPWLIGTALLHSLIVTEKRGAFRNWTVLLSIFAFSLSLLGTFIVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFAADPSRGMFILLLLGLAIGGSLTLFAFRASEMRSPARFELKSKETMLLVCNLLLTV
HHHHCCCCCCCHHHHHHHHHHHCCCCEEEEEEHHHCCCCCCEEECCCCHHHHHHHHHHHH
ACGTVLLGTLYPLLIDALGMGKISVGPPYFNAVFVPIVLVLFGFMGIGPIIRWKKSKAGE
HHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHCCCHHHEECCCCHHH
LKRQLIIPAVISAVVGLAAPFIAGGEFNAWVVFGIAAAVWVTLMTFRAAYNMVKTKDGSI
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE
DLTRLGRSQLGMIIAHLGIAVSVVGATMVSNYSLEKSVRMGPGISHELAGYTFNYVETKN
EHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCHHHCCCEEEEEEECC
VVGPNYTAQQGQIEVYQGDDYVTLLRPDRRQYNVRTMDMTEAGIDWGLFRDLYVTMGDPI
CCCCCCCCCCCEEEEEECCCEEEEECCCCCCCCEEEEECHHCCCCHHHHHHHHHCCCCCC
SRTEYAVRINYKPFVRWIWFGSIFMMVGGFFAASDKRYRVKAKSTEKTAAKEADKLATA
CCCEEEEEECCHHHHHHHHHHHHHHHHCCHHCCCCCEEEEEECCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA