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The map label for this gene is cycH [H]

Identifier: 157960046

GI number: 157960046

Start: 229230

End: 230483

Strand: Reverse

Name: cycH [H]

Synonym: Spea_0217

Alternate gene names: 157960046

Gene position: 230483-229230 (Counterclockwise)

Preceding gene: 157960051

Following gene: 157960044

Centisome position: 4.45

GC content: 44.42

Gene sequence:

>1254_bases
ATGACCACATTCTGGATTTTGATAGCCTCATTTCTACTGGTTAGCCTAGCGCTGATTTGGTTCCCACATTTCCGTCAACA
GCGCATGCTGAGGACTGAAGAAGCCGATGTTCGTAAGGGTACTAACCTCGAACTATTCAATGAGCGACTCGCTACTTTAG
AGAAAGAACTTCAAGAAGAACTTCTCGATCAACCTGAGTTTGATGCCCTTAAGAAAGAGCTTGAAATCAGCTTACTTCAA
GACATGAAGCAAGGTGATGACGAGTCATTAGTTAACACACTAAAGCCAAAAAGCATCATGTGGCCGTCAGTTATGACCGT
CGTTATTGTCGGTATCTGTGGTTACATGTACTCAACATTGGGTGCCTATAAAAATTTAGACCAACCAATGACAGCAAATG
ATCCCCATGCAGGCCAAACCACTGAACAGATCATGTCGCAGCGTGTTGGCATGATGGAAGCACAAGCACAAGCAGAGCCT
GAAAATAGCCAATTGTGGTTCAATCTTGGTCACGCTTACATTTCAGCAAACCGTTATGATGACGCAATCAAAGCATTCGA
TAAGACAATAGATCTTGTTGGTGTTCATGCTGAGTTACTTGGCCCGAAAGCAACAGCACTTTATTACCGCTCTAACCAAA
AGATGACACCAACGGTTCAAGCTCTTGTTGATCAAGCACTAAGCCTTGACCCAGTAGACCCATCTACACTGTTACTTGTT
GGCATGGATTCGTTCTTTACCGCGGACTATCCAAAAGCAATTGACGCTTGGCAGTTAATCCTAGATAGCGATCGTACTGA
CGTTGACCGTGGTGCAATCATGAATGCTATCGATAGCGCTAAAATGAGACTCGGATCAGATGGCGCGATGCCGAATGATG
ATGCTCATAAAAATGTACAGTCTGCAACAACGGCAAAGACTGTAACAGTTGAAGTTTCTATCTCACCAGAGCTTCAGGCT
AAAGTGGCAAGTACAGATATGCTATTTATCTTCGCTCGCTCAACTGAAGGCCCTAAAGTACCTCTTGCAGCTACAAAGAT
TTCTGCGGAGTCTCTACCTGCAACGATTACTTTAGATGACAGCACCGGCATGGGTGGCAACACTAAGCTAAGCGATGCAA
AAGCCGTTGAAATTATCGCGGTACTGTCTAAGCATGGTAGCGTAAGAGCTCAATCTGGTGACATCCAAGGCACACTTGCG
ATGCTAAAAGTTGGTGAGACTGGCCAACTAGTTCTTGATACTCAAGTTCAATAA

Upstream 100 bases:

>100_bases
TCAAGTTATATTACTGTTCAATGAATAATCTTTCCGTATAATCTTATCCCTAGTTCAGCGGTGAAGCCGCTTTTTCGCAA
ACTAAAGTGAAATAGACATA

Downstream 100 bases:

>100_bases
GACTTAACTACTGAAAAAACCGGCGATAGTCGGTTTTTTTATGTCTATTCTCGACTAATGAAATTTATACCAATCAGTAT
AAAGGTTTGGTCGCTCAGCG

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MTTFWILIASFLLVSLALIWFPHFRQQRMLRTEEADVRKGTNLELFNERLATLEKELQEELLDQPEFDALKKELEISLLQ
DMKQGDDESLVNTLKPKSIMWPSVMTVVIVGICGYMYSTLGAYKNLDQPMTANDPHAGQTTEQIMSQRVGMMEAQAQAEP
ENSQLWFNLGHAYISANRYDDAIKAFDKTIDLVGVHAELLGPKATALYYRSNQKMTPTVQALVDQALSLDPVDPSTLLLV
GMDSFFTADYPKAIDAWQLILDSDRTDVDRGAIMNAIDSAKMRLGSDGAMPNDDAHKNVQSATTAKTVTVEVSISPELQA
KVASTDMLFIFARSTEGPKVPLAATKISAESLPATITLDDSTGMGGNTKLSDAKAVEIIAVLSKHGSVRAQSGDIQGTLA
MLKVGETGQLVLDTQVQ

Sequences:

>Translated_417_residues
MTTFWILIASFLLVSLALIWFPHFRQQRMLRTEEADVRKGTNLELFNERLATLEKELQEELLDQPEFDALKKELEISLLQ
DMKQGDDESLVNTLKPKSIMWPSVMTVVIVGICGYMYSTLGAYKNLDQPMTANDPHAGQTTEQIMSQRVGMMEAQAQAEP
ENSQLWFNLGHAYISANRYDDAIKAFDKTIDLVGVHAELLGPKATALYYRSNQKMTPTVQALVDQALSLDPVDPSTLLLV
GMDSFFTADYPKAIDAWQLILDSDRTDVDRGAIMNAIDSAKMRLGSDGAMPNDDAHKNVQSATTAKTVTVEVSISPELQA
KVASTDMLFIFARSTEGPKVPLAATKISAESLPATITLDDSTGMGGNTKLSDAKAVEIIAVLSKHGSVRAQSGDIQGTLA
MLKVGETGQLVLDTQVQ
>Mature_416_residues
TTFWILIASFLLVSLALIWFPHFRQQRMLRTEEADVRKGTNLELFNERLATLEKELQEELLDQPEFDALKKELEISLLQD
MKQGDDESLVNTLKPKSIMWPSVMTVVIVGICGYMYSTLGAYKNLDQPMTANDPHAGQTTEQIMSQRVGMMEAQAQAEPE
NSQLWFNLGHAYISANRYDDAIKAFDKTIDLVGVHAELLGPKATALYYRSNQKMTPTVQALVDQALSLDPVDPSTLLLVG
MDSFFTADYPKAIDAWQLILDSDRTDVDRGAIMNAIDSAKMRLGSDGAMPNDDAHKNVQSATTAKTVTVEVSISPELQAK
VASTDMLFIFARSTEGPKVPLAATKISAESLPATITLDDSTGMGGNTKLSDAKAVEIIAVLSKHGSVRAQSGDIQGTLAM
LKVGETGQLVLDTQVQ

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG4235

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1790513, Length=181, Percent_Identity=29.2817679558011, Blast_Score=102, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017560
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45692; Mature: 45560

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTFWILIASFLLVSLALIWFPHFRQQRMLRTEEADVRKGTNLELFNERLATLEKELQEE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LLDQPEFDALKKELEISLLQDMKQGDDESLVNTLKPKSIMWPSVMTVVIVGICGYMYSTL
HHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
GAYKNLDQPMTANDPHAGQTTEQIMSQRVGMMEAQAQAEPENSQLWFNLGHAYISANRYD
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHCCCCCCCEEEEEECEEEEECCCHH
DAIKAFDKTIDLVGVHAELLGPKATALYYRSNQKMTPTVQALVDQALSLDPVDPSTLLLV
HHHHHHHHHHHHEEEHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
GMDSFFTADYPKAIDAWQLILDSDRTDVDRGAIMNAIDSAKMRLGSDGAMPNDDAHKNVQ
ECCHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
SATTAKTVTVEVSISPELQAKVASTDMLFIFARSTEGPKVPLAATKISAESLPATITLDD
HHCCEEEEEEEEEECCCHHHHHCCCEEEEEEEECCCCCCCCEEEEEECHHHCCEEEEECC
STGMGGNTKLSDAKAVEIIAVLSKHGSVRAQSGDIQGTLAMLKVGETGQLVLDTQVQ
CCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEEEEECCCCCEEEECCCC
>Mature Secondary Structure 
TTFWILIASFLLVSLALIWFPHFRQQRMLRTEEADVRKGTNLELFNERLATLEKELQEE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
LLDQPEFDALKKELEISLLQDMKQGDDESLVNTLKPKSIMWPSVMTVVIVGICGYMYSTL
HHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
GAYKNLDQPMTANDPHAGQTTEQIMSQRVGMMEAQAQAEPENSQLWFNLGHAYISANRYD
HHHHCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHCCCCCCCEEEEEECEEEEECCCHH
DAIKAFDKTIDLVGVHAELLGPKATALYYRSNQKMTPTVQALVDQALSLDPVDPSTLLLV
HHHHHHHHHHHHEEEHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEEE
GMDSFFTADYPKAIDAWQLILDSDRTDVDRGAIMNAIDSAKMRLGSDGAMPNDDAHKNVQ
ECCHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
SATTAKTVTVEVSISPELQAKVASTDMLFIFARSTEGPKVPLAATKISAESLPATITLDD
HHCCEEEEEEEEEECCCHHHHHCCCEEEEEEEECCCCCCCCEEEEEECHHHCCEEEEECC
STGMGGNTKLSDAKAVEIIAVLSKHGSVRAQSGDIQGTLAMLKVGETGQLVLDTQVQ
CCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCEEEEEEEECCCCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]