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The map label for this gene is ccmD [H]

Identifier: 157960041

GI number: 157960041

Start: 225544

End: 225741

Strand: Reverse

Name: ccmD [H]

Synonym: Spea_0212

Alternate gene names: 157960041

Gene position: 225741-225544 (Counterclockwise)

Preceding gene: 157960042

Following gene: 157960040

Centisome position: 4.36

GC content: 42.93

Gene sequence:

>198_bases
ATGCAGTTCGACTCAGTTAGTGAATTTATCAATATGGGCGGCTACGCATTCTATGTTTGGCTTGCCTACGGTGTAACCTT
TTTCTCACTAGGTACCTTAGTTGTCCTTAGTGTTAGACAGAAACGCAAGGTGTTAGTAGAAATCGCGAAGAAGATCCAGC
GCGAAGAACGCCTAAAAGAAACTCGGAGTACAAAATAG

Upstream 100 bases:

>100_bases
TTGGTGCGATAACATTAGTGAGATTTAGATCAGAAATTTTGGCACGAAATGGCATGCGTCCATGGGTTCGTGAACTTGCT
AAAGCAGAAGGGGTCAAATA

Downstream 100 bases:

>100_bases
TGAATCCTAGACGTAAAAAACGCCTTACCCTTGCTGTAGCCTTAATTGGTGGTGTTGCAGCGATCGCTTCTTTGCTTTTA
TACGCTTTGAACTCAAATCT

Product: Heme exporter protein CcmD

Products: NA

Alternate protein names: Cytochrome c-type biogenesis protein CcmD [H]

Number of amino acids: Translated: 65; Mature: 65

Protein sequence:

>65_residues
MQFDSVSEFINMGGYAFYVWLAYGVTFFSLGTLVVLSVRQKRKVLVEIAKKIQREERLKETRSTK

Sequences:

>Translated_65_residues
MQFDSVSEFINMGGYAFYVWLAYGVTFFSLGTLVVLSVRQKRKVLVEIAKKIQREERLKETRSTK
>Mature_65_residues
MQFDSVSEFINMGGYAFYVWLAYGVTFFSLGTLVVLSVRQKRKVLVEIAKKIQREERLKETRSTK

Specific function: Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes (Potential) [H]

COG id: COG3114

COG function: function code U; Heme exporter protein D

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CcmD/CycX/HelD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007078 [H]

Pfam domain/function: PF04995 CcmD [H]

EC number: NA

Molecular weight: Translated: 7594; Mature: 7594

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFDSVSEFINMGGYAFYVWLAYGVTFFSLGTLVVLSVRQKRKVLVEIAKKIQREERLKE
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRSTK
HCCCC
>Mature Secondary Structure
MQFDSVSEFINMGGYAFYVWLAYGVTFFSLGTLVVLSVRQKRKVLVEIAKKIQREERLKE
CCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRSTK
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]