| Definition | Shewanella pealeana ATCC 700345 chromosome, complete genome. |
|---|---|
| Accession | NC_009901 |
| Length | 5,174,581 |
Click here to switch to the map view.
The map label for this gene is gyrB [H]
Identifier: 157959834
GI number: 157959834
Start: 3924
End: 6365
Strand: Direct
Name: gyrB [H]
Synonym: Spea_0004
Alternate gene names: 157959834
Gene position: 3924-6365 (Clockwise)
Preceding gene: 157959833
Following gene: 157959835
Centisome position: 0.08
GC content: 44.8
Gene sequence:
>2442_bases TTGAATAACCGACGAGAGAATAATATGTCAGAGAATAGTTATGATTCTTCGAGTATTAAGGTTCTAAAGGGCCTTGATGC GGTACGTAAAAGACCAGGCATGTACATCGGTGATACCGATGATGGTACAGGTCTACATCACATGGTATTCGAAGTAGTCG ATAACTCTATCGATGAAGCGTTAGCGGGCCACTGTAACGACGTCATTATTACCATTCATGCCGATGGTTCTGTATCGGTT CGAGATGACGGCCGTGGTATTCCGGTATCGATCCACGAAGAGGAAGGTATCTCTGCTGCTGAAGTTATTATGACCGTACT TCACGCTGGTGGTAAATTCGATGATAACTCTTATAAAGTATCGGGTGGTTTGCACGGTGTTGGTGTGTCGGTTGTAAACG CACTATCTTCAAAGCTGCAGATGACTATCCGTCGTGACGGCAAAGTATACGAGCAATTCTACACCCACGGTGTACCAGAT GCTCCTATTGCACCGATTGGCGAAGCGACTAAGACTGGTACAGAAATCCGTTTTTGGCCAAGCACTGAGACATTCACTGA CGTCTTGTTCCATTTCGATATCTTAGCTAAGCGTGTTCGTGAACTGTCATTCTTGAACTCAGGTGTGGGTATTCGTCTTG TTGATGAGCGTGATAACCGTGATGAATTCTTCAAATACGAAGGCGGTATCAGTGCATTTGTTGACTACTTAAACGTTAAC AAAACACCGGTAAACAAAGAAGTATTCCACTTCTGTCAAGAGCGTGAAGACGGTATTACCGTTGAAGTCGCTATGCAATG GAACGATGGTTTCCAAGAGAATATCTTCTGTTTTACCAACAATATTCCACAGCGCGATGGTGGTACTCACTTAGCGGGCT TCCGTGGTGCGTTGACACGTAACTTGAATAACTACATGGAACGTGAAGGGTATAATAAGAAAGGTAAGACTGCTGCAACG GGTGATGACGCTCGTGAAGGTCTAACTGCAGTTATTTCAGTTAAAGTGCCGGATCCTAAGTTCAGTTCACAGACTAAAGA TAAGTTAGTTTCTAGTGAGGTAAAGTCTGCTGTTGAGCAAACTATGGGCGAGCAGTTAGGTGATTACCTAATGGAGCATC CAAACGAAGCTAAGTTAATTGTTGGTAAGATTATCGACGCAGCGCGTGCTCGTGAAGCGGCACGTAAAGCGCGTGAAATG ACTCGTCGTAAGGGCGCATTAGATTTAGGTGGTTTGCCGGGTAAGCTTGCTGACTGCCAAGAGAAAGATCCTGGTCTTTC TGAAATTTACATAGTGGAGGGTGACTCAGCTGGTGGCAGCGCCAAGCAGGGTCGTAACCGTAAGAACCAAGCGATTCTTC CACTAAAAGGTAAGATCCTAAACGTAGAGAAAGCGCGTTTCGATAAGATGCTATCTTCGCAAGAAGTGGCAACACTAATC ACTGCACTAGGTTGCGGTATTGGTCGTGACGAATATAACCCAGATAAGACCCGTTATCACAACATCGTTATCATGACCGA TGCTGACGTCGACGGCTCGCACATTCGTACCTTGCTGTTGACCTTCTTCTTCCGTCAAATGCCTGAGCTTATTGAGCGTG GCTATGTATATATTGCACAACCACCTTTGTACAAGGTTAAGAAAGGTAAGCAAGAGCAATATCTGAAAGATGATCCAGCA TTGACTGAGTACTTAACGACTCAAGCACTTGATAATGCCAACATCTATCCTTCGCAGGGGGCACCAGGTATGTCTGGTCA GCCACTAGAGCGTTTGGTTAATCAGTATCGTGAAGTGGAAGCTATCATTGCTCGTCTAGAGCAGCGTTACCCAACTAACA TTACCGATCTAATGCTATATCACCCAGCAATCACTAATGAGATGTTGAGTGATGAAGCACAAATCAAAGCTTGGGCTGAC GTGTTTGTAGCTGATTTAATTGATAAAGAGACTGGCGGTATTTTATATAGTGCTGAGCCAGTGCTTGATCCTGAACGTCA AGTTTACCTGCCTAAGATTACAATCCGTAAGCACGGTATCGATACACACTACATGTTCTCATATGACTTCTTCCAGTCTA CTGATTACCAGCGCATCGTTAAGATGGGCTCTGAAATCAATGGTCTAGTAGAAGATGGTGGCTATGTACAACGTGGTGAG CGTACTAAGGATGTCACTAGCTTCGTTGAAGCATTAGATTGGTTAATGAACGAATCTAAGCGCGGCCTATACATCCAGCG TTATAAAGGATTGGGTGAGATGAACCCTGAGCAATTGTGGGAAACTACAATGGATCCTGAATCTCGTCGTATGCTACAAG TTACCATCGAAGATGCGATTGGTGCTGACCAGTTGTTTACCTGTTTGATGGGTGATCAGGTTGAGCCGCGTCGTGACTTT ATCGAAGCCAATGCTCTGAATGTGGCGAACCTCGACGTTTAA
Upstream 100 bases:
>100_bases CAAGTTTTTGTCACGGCTATTGAGCCTGCAGCAATAGTAGATTCGTTAATCACGCCGCCAAGTAAGATGTTCCATGTGGA ACAAGGTCGTGTAACGGTAA
Downstream 100 bases:
>100_bases GTTTATTTTTATCAGTAAACTTAATAATTGAGTAAAATCGGTGCTATAGGCACCGATTTTTTTTGTTAACAAATCCGTGT CCGGTCATAAGAAATTGATT
Product: DNA gyrase subunit B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 813; Mature: 813
Protein sequence:
>813_residues MNNRRENNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDVIITIHADGSVSV RDDGRGIPVSIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPD APIAPIGEATKTGTEIRFWPSTETFTDVLFHFDILAKRVRELSFLNSGVGIRLVDERDNRDEFFKYEGGISAFVDYLNVN KTPVNKEVFHFCQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGYNKKGKTAAT GDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREM TRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI TALGCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLYKVKKGKQEQYLKDDPA LTEYLTTQALDNANIYPSQGAPGMSGQPLERLVNQYREVEAIIARLEQRYPTNITDLMLYHPAITNEMLSDEAQIKAWAD VFVADLIDKETGGILYSAEPVLDPERQVYLPKITIRKHGIDTHYMFSYDFFQSTDYQRIVKMGSEINGLVEDGGYVQRGE RTKDVTSFVEALDWLMNESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIGADQLFTCLMGDQVEPRRDF IEANALNVANLDV
Sequences:
>Translated_813_residues MNNRRENNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDVIITIHADGSVSV RDDGRGIPVSIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPD APIAPIGEATKTGTEIRFWPSTETFTDVLFHFDILAKRVRELSFLNSGVGIRLVDERDNRDEFFKYEGGISAFVDYLNVN KTPVNKEVFHFCQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGYNKKGKTAAT GDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREM TRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI TALGCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLYKVKKGKQEQYLKDDPA LTEYLTTQALDNANIYPSQGAPGMSGQPLERLVNQYREVEAIIARLEQRYPTNITDLMLYHPAITNEMLSDEAQIKAWAD VFVADLIDKETGGILYSAEPVLDPERQVYLPKITIRKHGIDTHYMFSYDFFQSTDYQRIVKMGSEINGLVEDGGYVQRGE RTKDVTSFVEALDWLMNESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIGADQLFTCLMGDQVEPRRDF IEANALNVANLDV >Mature_813_residues MNNRRENNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCNDVIITIHADGSVSV RDDGRGIPVSIHEEEGISAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPD APIAPIGEATKTGTEIRFWPSTETFTDVLFHFDILAKRVRELSFLNSGVGIRLVDERDNRDEFFKYEGGISAFVDYLNVN KTPVNKEVFHFCQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTRNLNNYMEREGYNKKGKTAAT GDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQTMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREM TRRKGALDLGGLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI TALGCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQPPLYKVKKGKQEQYLKDDPA LTEYLTTQALDNANIYPSQGAPGMSGQPLERLVNQYREVEAIIARLEQRYPTNITDLMLYHPAITNEMLSDEAQIKAWAD VFVADLIDKETGGILYSAEPVLDPERQVYLPKITIRKHGIDTHYMFSYDFFQSTDYQRIVKMGSEINGLVEDGGYVQRGE RTKDVTSFVEALDWLMNESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAIGADQLFTCLMGDQVEPRRDF IEANALNVANLDV
Specific function: DNA gyrase negatively supercoils closed circular double- stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings [H]
COG id: COG0187
COG function: function code L; Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Homo sapiens, GI19913406, Length=572, Percent_Identity=23.7762237762238, Blast_Score=124, Evalue=4e-28, Organism=Homo sapiens, GI19913408, Length=562, Percent_Identity=25.2669039145907, Blast_Score=122, Evalue=2e-27, Organism=Escherichia coli, GI48994957, Length=803, Percent_Identity=71.2328767123288, Blast_Score=1194, Evalue=0.0, Organism=Escherichia coli, GI1789408, Length=557, Percent_Identity=40.394973070018, Blast_Score=378, Evalue=1e-106, Organism=Caenorhabditis elegans, GI17535065, Length=549, Percent_Identity=26.4116575591985, Blast_Score=131, Evalue=1e-30, Organism=Caenorhabditis elegans, GI212645845, Length=506, Percent_Identity=25.6916996047431, Blast_Score=115, Evalue=1e-25, Organism=Caenorhabditis elegans, GI212645657, Length=165, Percent_Identity=32.7272727272727, Blast_Score=72, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6324241, Length=575, Percent_Identity=25.2173913043478, Blast_Score=109, Evalue=2e-24, Organism=Drosophila melanogaster, GI17136538, Length=546, Percent_Identity=26.1904761904762, Blast_Score=136, Evalue=7e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011557 - InterPro: IPR020568 - InterPro: IPR014721 - InterPro: IPR001241 - InterPro: IPR013759 - InterPro: IPR002288 - InterPro: IPR013506 - InterPro: IPR013760 - InterPro: IPR018522 - InterPro: IPR006171 [H]
Pfam domain/function: PF00204 DNA_gyraseB; PF00986 DNA_gyraseB_C; PF02518 HATPase_c; PF01751 Toprim [H]
EC number: =5.99.1.3 [H]
Molecular weight: Translated: 90952; Mature: 90952
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: PS00177 TOPOISOMERASE_II
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNRRENNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEA CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHH LAGHCNDVIITIHADGSVSVRDDGRGIPVSIHEEEGISAAEVIMTVLHAGGKFDDNSYKV HHCCCCCEEEEEECCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEE SGGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPIAPIGEATKTGTEIRFWP CCCCCHHHHHHHHHHHHHHEEHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEC STETFTDVLFHFDILAKRVRELSFLNSGVGIRLVDERDNRDEFFKYEGGISAFVDYLNVN CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHEEECCCHHHHHHHHCCC KTPVNKEVFHFCQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTR CCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHH NLNNYMEREGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQ HHHHHHHHCCCCCCCCCCCCCCHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH TMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQ HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC EKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI CCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCEECHHHHHHHHHHHHHHHHHHH TALGCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQ HHHHCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEC PPLYKVKKGKQEQYLKDDPALTEYLTTQALDNANIYPSQGAPGMSGQPLERLVNQYREVE CCCHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH AIIARLEQRYPTNITDLMLYHPAITNEMLSDEAQIKAWADVFVADLIDKETGGILYSAEP HHHHHHHHHCCCCHHHHHEECCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEECCC VLDPERQVYLPKITIRKHGIDTHYMFSYDFFQSTDYQRIVKMGSEINGLVEDGGYVQRGE CCCCCCEEEECEEEEEECCCCEEEEEEEHHHCCCCHHHHHHHCCHHCCHHCCCCEEECCC RTKDVTSFVEALDWLMNESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAI CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCEEEEEEEHHHC GADQLFTCLMGDQVEPRRDFIEANALNVANLDV CHHHHHHHHHCCCCCHHHHHHHCCCCCEECCCC >Mature Secondary Structure MNNRRENNMSENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEA CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHH LAGHCNDVIITIHADGSVSVRDDGRGIPVSIHEEEGISAAEVIMTVLHAGGKFDDNSYKV HHCCCCCEEEEEECCCEEEECCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEE SGGLHGVGVSVVNALSSKLQMTIRRDGKVYEQFYTHGVPDAPIAPIGEATKTGTEIRFWP CCCCCHHHHHHHHHHHHHHEEHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEC STETFTDVLFHFDILAKRVRELSFLNSGVGIRLVDERDNRDEFFKYEGGISAFVDYLNVN CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHEEECCCHHHHHHHHCCC KTPVNKEVFHFCQEREDGITVEVAMQWNDGFQENIFCFTNNIPQRDGGTHLAGFRGALTR CCCCCHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHH NLNNYMEREGYNKKGKTAATGDDAREGLTAVISVKVPDPKFSSQTKDKLVSSEVKSAVEQ HHHHHHHHCCCCCCCCCCCCCCHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH TMGEQLGDYLMEHPNEAKLIVGKIIDAARAREAARKAREMTRRKGALDLGGLPGKLADCQ HHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC EKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLI CCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECCCCEECHHHHHHHHHHHHHHHHHHH TALGCGIGRDEYNPDKTRYHNIVIMTDADVDGSHIRTLLLTFFFRQMPELIERGYVYIAQ HHHHCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEC PPLYKVKKGKQEQYLKDDPALTEYLTTQALDNANIYPSQGAPGMSGQPLERLVNQYREVE CCCHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH AIIARLEQRYPTNITDLMLYHPAITNEMLSDEAQIKAWADVFVADLIDKETGGILYSAEP HHHHHHHHHCCCCHHHHHEECCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEECCC VLDPERQVYLPKITIRKHGIDTHYMFSYDFFQSTDYQRIVKMGSEINGLVEDGGYVQRGE CCCCCCEEEECEEEEEECCCCEEEEEEEHHHCCCCHHHHHHHCCHHCCHHCCCCEEECCC RTKDVTSFVEALDWLMNESKRGLYIQRYKGLGEMNPEQLWETTMDPESRRMLQVTIEDAI CHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHHHCCCCCCCEEEEEEEHHHC GADQLFTCLMGDQVEPRRDFIEANALNVANLDV CHHHHHHHHHCCCCCHHHHHHHCCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]