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The map label for this gene is cspA [H]

Identifier: 157826078

GI number: 157826078

Start: 926264

End: 926476

Strand: Reverse

Name: cspA [H]

Synonym: A1C_05190

Alternate gene names: 157826078

Gene position: 926476-926264 (Counterclockwise)

Preceding gene: 157826080

Following gene: 157826077

Centisome position: 75.26

GC content: 35.68

Gene sequence:

>213_bases
ATGGCTACAAATATAGTAGGTAAAGTTAAGTGGTATAATTCTACGAAGAATTTTGGATTTATTGAACAGGAAAATGGCGG
CAAAGATGTGTTTGTACACAAATCAGCCGTAGAAGCGACAGGTTTACATAGCCTTGAAGAAGGACAAGATGTAATTTTTG
ACCTTGAAGAAAAGCAAGGAAAAGCCTATGCTGTTAACCTCAGAATTAAATGA

Upstream 100 bases:

>100_bases
TCTTATACTTAGGGGAGGCTTAGAGTAAAATTAAGGTTTCAGTTATTATATAAGCGTGTGTTAAGTTCAAATAAGTAATT
TCTATCTAATAAAGGTTTTT

Downstream 100 bases:

>100_bases
ACGTATTTATAATACCAGAAGCAGCTATCCAAAATTGTTTATAATTGAGGGTAGCACAGTCATCTTTATCAGAATAGTAA
ATCTTTTGTTTTTGTCTTAT

Product: cold shock-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MATNIVGKVKWYNSTKNFGFIEQENGGKDVFVHKSAVEATGLHSLEEGQDVIFDLEEKQGKAYAVNLRIK

Sequences:

>Translated_70_residues
MATNIVGKVKWYNSTKNFGFIEQENGGKDVFVHKSAVEATGLHSLEEGQDVIFDLEEKQGKAYAVNLRIK
>Mature_69_residues
ATNIVGKVKWYNSTKNFGFIEQENGGKDVFVHKSAVEATGLHSLEEGQDVIFDLEEKQGKAYAVNLRIK

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=63, Percent_Identity=49.2063492063492, Blast_Score=67, Evalue=2e-13,
Organism=Escherichia coli, GI1789979, Length=67, Percent_Identity=46.2686567164179, Blast_Score=64, Evalue=2e-12,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=46.1538461538462, Blast_Score=63, Evalue=4e-12,
Organism=Escherichia coli, GI2367114, Length=67, Percent_Identity=41.7910447761194, Blast_Score=62, Evalue=7e-12,
Organism=Escherichia coli, GI1787839, Length=69, Percent_Identity=43.4782608695652, Blast_Score=61, Evalue=2e-11,
Organism=Escherichia coli, GI1787834, Length=67, Percent_Identity=41.7910447761194, Blast_Score=59, Evalue=6e-11,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7829; Mature: 7698

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATNIVGKVKWYNSTKNFGFIEQENGGKDVFVHKSAVEATGLHSLEEGQDVIFDLEEKQG
CCCCCEEEEEEECCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCC
KAYAVNLRIK
CEEEEEEEEC
>Mature Secondary Structure 
ATNIVGKVKWYNSTKNFGFIEQENGGKDVFVHKSAVEATGLHSLEEGQDVIFDLEEKQG
CCCCEEEEEEECCCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEECCCC
KAYAVNLRIK
CEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]