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The map label for this gene is nifU [H]

Identifier: 157825852

GI number: 157825852

Start: 707002

End: 707397

Strand: Reverse

Name: nifU [H]

Synonym: A1C_03955

Alternate gene names: 157825852

Gene position: 707397-707002 (Counterclockwise)

Preceding gene: 157825853

Following gene: 157825851

Centisome position: 57.46

GC content: 36.87

Gene sequence:

>396_bases
ATGGCTTATAGCACAAAAGTGATAGATCATTATGAAAATCCTCGTAATGTCGGGTCACTTGATAAAGAGAAAAAAAATGT
CGGAACGGGACTAGTTGGAGCTCCTGCTTGTGGTGATGTAATGAAGTTACAAATCGAAGTTGATGATGACGGGATTATTA
CAGATGCTAAGTTTAAAACATTCGGCTGCGGTTCAGCTATTGCTTCAAGTTCTTTAGTAACGGAATGGGTTAAAGGAAGA
TCGATAAATGATGCTGGAGAAATTAAAAATACTGAGATAGCAAAAGAATTATCGCTCCCACCGGTAAAATTACATTGCTC
ACTACTTGCTGAAGATGCAATAAAAGCAGCTATTGCCGATTACAAACAGAAAAAAGAAAGCAAAAAAGACTCTTAA

Upstream 100 bases:

>100_bases
ACATTGAGAATATTAATGTCATCCAGTGATCCCATGCACCGTATGTCATTCCCGCAAAAGCGGGAATGACAAAATTGAAA
ATAAATTTTAGAGAATAACA

Downstream 100 bases:

>100_bases
AACATGAAAAATGTTATTTCATTAACCGATTCTGCTGCAAAGCAAGTAAAATTGCTAATAGAAAAACGAGACAAGCCTAC
CTTTGGTGTTAGGGTAGGGG

Product: scaffold protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MAYSTKVIDHYENPRNVGSLDKEKKNVGTGLVGAPACGDVMKLQIEVDDDGIITDAKFKTFGCGSAIASSSLVTEWVKGR
SINDAGEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQKKESKKDS

Sequences:

>Translated_131_residues
MAYSTKVIDHYENPRNVGSLDKEKKNVGTGLVGAPACGDVMKLQIEVDDDGIITDAKFKTFGCGSAIASSSLVTEWVKGR
SINDAGEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQKKESKKDS
>Mature_130_residues
AYSTKVIDHYENPRNVGSLDKEKKNVGTGLVGAPACGDVMKLQIEVDDDGIITDAKFKTFGCGSAIASSSLVTEWVKGRS
INDAGEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQKKESKKDS

Specific function: May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins (Potential) [H]

COG id: COG0822

COG function: function code C; NifU homolog involved in Fe-S cluster formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nifU family [H]

Homologues:

Organism=Homo sapiens, GI56699456, Length=127, Percent_Identity=79.5275590551181, Blast_Score=215, Evalue=9e-57,
Organism=Homo sapiens, GI24307953, Length=126, Percent_Identity=80.1587301587302, Blast_Score=213, Evalue=3e-56,
Organism=Escherichia coli, GI1788878, Length=128, Percent_Identity=78.125, Blast_Score=216, Evalue=5e-58,
Organism=Caenorhabditis elegans, GI17543474, Length=127, Percent_Identity=75.5905511811024, Blast_Score=201, Evalue=1e-52,
Organism=Saccharomyces cerevisiae, GI6325122, Length=126, Percent_Identity=74.6031746031746, Blast_Score=198, Evalue=2e-52,
Organism=Saccharomyces cerevisiae, GI6324800, Length=124, Percent_Identity=75.8064516129032, Blast_Score=195, Evalue=2e-51,
Organism=Drosophila melanogaster, GI21355597, Length=126, Percent_Identity=77.7777777777778, Blast_Score=210, Evalue=2e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011339
- InterPro:   IPR002871 [H]

Pfam domain/function: PF01592 NifU_N [H]

EC number: NA

Molecular weight: Translated: 14070; Mature: 13939

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYSTKVIDHYENPRNVGSLDKEKKNVGTGLVGAPACGDVMKLQIEVDDDGIITDAKFKT
CCCCCCHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEECCCCCC
FGCGSAIASSSLVTEWVKGRSINDAGEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIAD
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YKQKKESKKDS
HHHHHHCCCCC
>Mature Secondary Structure 
AYSTKVIDHYENPRNVGSLDKEKKNVGTGLVGAPACGDVMKLQIEVDDDGIITDAKFKT
CCCCCHHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCEEEEEEEECCCCEEECCCCCC
FGCGSAIASSSLVTEWVKGRSINDAGEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIAD
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
YKQKKESKKDS
HHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]