Click here to switch to the map view.

The map label for this gene is virD4 [H]

Identifier: 157825514

GI number: 157825514

Start: 388397

End: 390172

Strand: Direct

Name: virD4 [H]

Synonym: A1C_02075

Alternate gene names: 157825514

Gene position: 388397-390172 (Clockwise)

Preceding gene: 157825513

Following gene: 157825515

Centisome position: 31.55

GC content: 35.81

Gene sequence:

>1776_bases
ATGGAATGGCATAAGATACTTAAAGTTACTAGAAATATATTTGGTCATGCTATAATTCATCCGGTTGTTATTTTTTGTAC
CATTTGGCTAAGTGGTGCATTTGTTGCAATTTTTACTAATGAGGTTGGAGCTTTAGGTGGAGATATAAATGCTATAAATA
TTGCTTATAAGTGGGCTTACTGGCTTATTAACGTTTGGGGGCAGTTAAAAATTGCCGACTATAATTATTTAAAATTGAAG
CTACTTGCATCTCTTCTTGGTCCCGCTATTGTTGTAATAATATTTTACATTAAAAATTTTGCACGAATAAAATCATTACA
ATTTTTTGAGCAACCGGAAAAAGTATATGGAGATGCTAGCTGGGCTAATCCGTCAGATATAGAGGCTGCTGGTCTTAGAT
CCAAAAAAGGTATGTTAATAGGTGTAGATGCCGGTGGATATTTTGTTGCAGATGGGTTCCAGCATGCTTTATTATTTGCT
CCTACAGGTTCAGGTAAAGGTGTGGGTTTTGTGATACCTAACCTGTTATTTTGGAGTGATTCAGTAGTAGTACATGACAT
AAAGCTCGAAAATCACGGTTTGACGAGCGGTTGGCGTGAAAAACAAGGTCAGAAAGTTTTTGTTTGGGAGCCTTCTAATC
CCGACGGTATTACGCATTGTTATAATCCGATTGATTGGGTTAGTACTAAGCCCGGGCAGATGGTTGATGACGTTCAAAAA
ATTTCAAATCTTATAATGCCGGAAAAGGATTTTTGGAATAATGAAGCACGAAGTTTATTCTTAGGTGTAACTTTATATTT
AATAGCTGATCCTACTAAAACTAAATCTTTCGGTGAAGTAGTGCGTACCATGAGAAGTGATGACGTAGTTTATAATCTAG
CGGTCGTACTCGATACGCTTGGCGGTGTAATACATCCTGTTGCATATATGAATATTGCTGCGTTTTTGCAAAAAGCTGAT
AAAGAGCGTTCGGGCGTAATATCTACAATGAACTCATCGCTTGAATTATGGGCAAACCCGCTTATTGATTCGGCTACTGC
ATCTTCTGATTTCAACATACAAGAATTTAAAAAAGTAAAAACAACCGTATATGTAGGATTAACACCCGATAATATACAGC
GTTTGCAAAAATTAATGCAGGTGTTTTATCAGCAGGCGACAGAATTTTTAAGCCGTAAAATGCCGAATTTAAAGGAAGAG
CCGTATGGTGTAATGTTCTTACTTGATGAGTTCCCGACGCTTGGAAAGATGGATACTTTTAAAGCCGGTATAGCTTATTT
TAGAGGTTATAGAGTTCGGTTATTCTTGATTATTCAAGATACGCAGCAGTTAAAAGGCACATATGAAGATGCAGGGATGA
ATTCCTTCTTATCTAATGCAACATACCGTATTACTTTTGCTGCTAATAACTATGAAACGGCAAATTTAATATCGCAGCTT
GTCGGTAATAAGACGGTAGAACAAAGATCATTTAGTAAACCTTTATTTTTTGACCTTAATATTTCTACTAGAACCCAAAA
CGTTTCTCAAGTTCAAAGAGCTTTACTTTTACCTCAAGAAGTAATACAGTTACCTAGAGATGAGCAAATTGTTTTAATAG
AATCCTTTCCGCCTATAAAATCTCGTAAAATTAAGTATTACGAAGATAAATTTTTTACTAGTAGATTATTACCACCGACT
TTTGTACCTACTCAAGTACCTTTTGATCCTAGGGCAAATAATAATGAGGCTTCTGAAGAGACTGAAATAACAACTGCTCC
GGAAAATAATGAGTAA

Upstream 100 bases:

>100_bases
TTCCGCGATCAAGTTTTGGGATGACACTGGGAAAGTCACTTCACGCAAAAACCCTTCACACAAAAACTAACATATAAGTA
AAAACTAGGAAGCTCAGTTC

Downstream 100 bases:

>100_bases
GATCCAAAAATGCGTTCAGCTATTATTGATATCGGTTCAAATGCTTTAAGAGCTGTGGTTTATGAAAGTGATGAGCTTGG
AGCTCCGGAAATTTTTAATT

Product: type IV secretion system component VirD4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 591; Mature: 591

Protein sequence:

>591_residues
MEWHKILKVTRNIFGHAIIHPVVIFCTIWLSGAFVAIFTNEVGALGGDINAINIAYKWAYWLINVWGQLKIADYNYLKLK
LLASLLGPAIVVIIFYIKNFARIKSLQFFEQPEKVYGDASWANPSDIEAAGLRSKKGMLIGVDAGGYFVADGFQHALLFA
PTGSGKGVGFVIPNLLFWSDSVVVHDIKLENHGLTSGWREKQGQKVFVWEPSNPDGITHCYNPIDWVSTKPGQMVDDVQK
ISNLIMPEKDFWNNEARSLFLGVTLYLIADPTKTKSFGEVVRTMRSDDVVYNLAVVLDTLGGVIHPVAYMNIAAFLQKAD
KERSGVISTMNSSLELWANPLIDSATASSDFNIQEFKKVKTTVYVGLTPDNIQRLQKLMQVFYQQATEFLSRKMPNLKEE
PYGVMFLLDEFPTLGKMDTFKAGIAYFRGYRVRLFLIIQDTQQLKGTYEDAGMNSFLSNATYRITFAANNYETANLISQL
VGNKTVEQRSFSKPLFFDLNISTRTQNVSQVQRALLLPQEVIQLPRDEQIVLIESFPPIKSRKIKYYEDKFFTSRLLPPT
FVPTQVPFDPRANNNEASEETEITTAPENNE

Sequences:

>Translated_591_residues
MEWHKILKVTRNIFGHAIIHPVVIFCTIWLSGAFVAIFTNEVGALGGDINAINIAYKWAYWLINVWGQLKIADYNYLKLK
LLASLLGPAIVVIIFYIKNFARIKSLQFFEQPEKVYGDASWANPSDIEAAGLRSKKGMLIGVDAGGYFVADGFQHALLFA
PTGSGKGVGFVIPNLLFWSDSVVVHDIKLENHGLTSGWREKQGQKVFVWEPSNPDGITHCYNPIDWVSTKPGQMVDDVQK
ISNLIMPEKDFWNNEARSLFLGVTLYLIADPTKTKSFGEVVRTMRSDDVVYNLAVVLDTLGGVIHPVAYMNIAAFLQKAD
KERSGVISTMNSSLELWANPLIDSATASSDFNIQEFKKVKTTVYVGLTPDNIQRLQKLMQVFYQQATEFLSRKMPNLKEE
PYGVMFLLDEFPTLGKMDTFKAGIAYFRGYRVRLFLIIQDTQQLKGTYEDAGMNSFLSNATYRITFAANNYETANLISQL
VGNKTVEQRSFSKPLFFDLNISTRTQNVSQVQRALLLPQEVIQLPRDEQIVLIESFPPIKSRKIKYYEDKFFTSRLLPPT
FVPTQVPFDPRANNNEASEETEITTAPENNE
>Mature_591_residues
MEWHKILKVTRNIFGHAIIHPVVIFCTIWLSGAFVAIFTNEVGALGGDINAINIAYKWAYWLINVWGQLKIADYNYLKLK
LLASLLGPAIVVIIFYIKNFARIKSLQFFEQPEKVYGDASWANPSDIEAAGLRSKKGMLIGVDAGGYFVADGFQHALLFA
PTGSGKGVGFVIPNLLFWSDSVVVHDIKLENHGLTSGWREKQGQKVFVWEPSNPDGITHCYNPIDWVSTKPGQMVDDVQK
ISNLIMPEKDFWNNEARSLFLGVTLYLIADPTKTKSFGEVVRTMRSDDVVYNLAVVLDTLGGVIHPVAYMNIAAFLQKAD
KERSGVISTMNSSLELWANPLIDSATASSDFNIQEFKKVKTTVYVGLTPDNIQRLQKLMQVFYQQATEFLSRKMPNLKEE
PYGVMFLLDEFPTLGKMDTFKAGIAYFRGYRVRLFLIIQDTQQLKGTYEDAGMNSFLSNATYRITFAANNYETANLISQL
VGNKTVEQRSFSKPLFFDLNISTRTQNVSQVQRALLLPQEVIQLPRDEQIVLIESFPPIKSRKIKYYEDKFFTSRLLPPT
FVPTQVPFDPRANNNEASEETEITTAPENNE

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 66752; Mature: 66752

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS00307 LECTIN_LEGUME_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWHKILKVTRNIFGHAIIHPVVIFCTIWLSGAFVAIFTNEVGALGGDINAINIAYKWAY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHCCCCCCEEEEEHHHHHH
WLINVWGQLKIADYNYLKLKLLASLLGPAIVVIIFYIKNFARIKSLQFFEQPEKVYGDAS
HHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
WANPSDIEAAGLRSKKGMLIGVDAGGYFVADGFQHALLFAPTGSGKGVGFVIPNLLFWSD
CCCCCCCCHHCCCCCCCEEEEECCCCEEEECCCCEEEEEEECCCCCEEEEECCCHHEECC
SVVVHDIKLENHGLTSGWREKQGQKVFVWEPSNPDGITHCYNPIDWVSTKPGQMVDDVQK
CEEEEEEEECCCCCCCCHHHCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCCHHHHHHHH
ISNLIMPEKDFWNNEARSLFLGVTLYLIADPTKTKSFGEVVRTMRSDDVVYNLAVVLDTL
HHHHCCCCHHHCCCHHHHEEEEEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
GGVIHPVAYMNIAAFLQKADKERSGVISTMNSSLELWANPLIDSATASSDFNIQEFKKVK
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHCHHHCCCCCCCCCCHHHHHHEE
TTVYVGLTPDNIQRLQKLMQVFYQQATEFLSRKMPNLKEEPYGVMFLLDEFPTLGKMDTF
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHH
KAGIAYFRGYRVRLFLIIQDTQQLKGTYEDAGMNSFLSNATYRITFAANNYETANLISQL
HHHHHHHCCCEEEEEEEEECCHHHCCCHHHCCHHHHHCCCEEEEEEEECCCCHHHHHHHH
VGNKTVEQRSFSKPLFFDLNISTRTQNVSQVQRALLLPQEVIQLPRDEQIVLIESFPPIK
HCCCCHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCC
SRKIKYYEDKFFTSRLLPPTFVPTQVPFDPRANNNEASEETEITTAPENNE
CCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
>Mature Secondary Structure
MEWHKILKVTRNIFGHAIIHPVVIFCTIWLSGAFVAIFTNEVGALGGDINAINIAYKWAY
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHCCCCCCEEEEEHHHHHH
WLINVWGQLKIADYNYLKLKLLASLLGPAIVVIIFYIKNFARIKSLQFFEQPEKVYGDAS
HHHHHCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCC
WANPSDIEAAGLRSKKGMLIGVDAGGYFVADGFQHALLFAPTGSGKGVGFVIPNLLFWSD
CCCCCCCCHHCCCCCCCEEEEECCCCEEEECCCCEEEEEEECCCCCEEEEECCCHHEECC
SVVVHDIKLENHGLTSGWREKQGQKVFVWEPSNPDGITHCYNPIDWVSTKPGQMVDDVQK
CEEEEEEEECCCCCCCCHHHCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCCHHHHHHHH
ISNLIMPEKDFWNNEARSLFLGVTLYLIADPTKTKSFGEVVRTMRSDDVVYNLAVVLDTL
HHHHCCCCHHHCCCHHHHEEEEEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
GGVIHPVAYMNIAAFLQKADKERSGVISTMNSSLELWANPLIDSATASSDFNIQEFKKVK
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHCHHHCCCCCCCCCCHHHHHHEE
TTVYVGLTPDNIQRLQKLMQVFYQQATEFLSRKMPNLKEEPYGVMFLLDEFPTLGKMDTF
EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCHHH
KAGIAYFRGYRVRLFLIIQDTQQLKGTYEDAGMNSFLSNATYRITFAANNYETANLISQL
HHHHHHHCCCEEEEEEEEECCHHHCCCHHHCCHHHHHCCCEEEEEEEECCCCHHHHHHHH
VGNKTVEQRSFSKPLFFDLNISTRTQNVSQVQRALLLPQEVIQLPRDEQIVLIESFPPIK
HCCCCHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHCCCCCCEEEEEECCCCCC
SRKIKYYEDKFFTSRLLPPTFVPTQVPFDPRANNNEASEETEITTAPENNE
CCCEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 3658701; 2822660 [H]