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The map label for this gene is yrdD [H]

Identifier: 157372741

GI number: 157372741

Start: 5001514

End: 5002059

Strand: Reverse

Name: yrdD [H]

Synonym: Spro_4508

Alternate gene names: 157372741

Gene position: 5002059-5001514 (Counterclockwise)

Preceding gene: 157372742

Following gene: 157372740

Centisome position: 91.8

GC content: 55.13

Gene sequence:

>546_bases
ATGACAAAAGCCGCGATTTTTGCCGCCAGGCAAAATGAACCCTGTCCGGAATGCGGGGCCGAGCTGGTGATCCGCAGTGG
TCGCCACGGCCCCTTCCTCGGCTGTACCCGTTACCCTGAATGCCAACATATCCGGCCGCTGAAAGCGCAGGCCGATGGCC
ATATCGTCAAAATGCTGGATGGACAGGAATGTCCAAAATGCCAGGCGACGCTGGCCTTGCGCCAGGGACGTTACGGCATG
TTTATCGCTTGCAGTAACTACCCGGAGTGCGACCACACCGAGGTTATCGATAAACCTGACGAAACCAGTATCAGCTGTCC
GCAGTGCGAACAGGGCAAATTGCTGCAGCGGAAATCGCGCTATGGCAAGGTGTTCCACTCCTGCGATCGCTACCCGGAAT
GCCAGTTTGTTCTCAATTTTAAACCCGTTGCCGGTGAGTGTGAGTACTGCCACTATCCGTTGCTGATGGAAAAGCGCACG
GCGAAAGGTCCAACCCTTTGCTGTGCCAGTAAACTTTGCGGGAAACCCGTAGTAACCACAGAATAA

Upstream 100 bases:

>100_bases
ATTCCCGGATATGAAAGTGCCTATCAGCAAATGGAAGAACTGTTGTTTGAAGTAAACGAAGGTTATCTGCACTGAGCCGA
TAACATACATAGAAGAAGTT

Downstream 100 bases:

>100_bases
TGACATCATGAGCTCAGAATCCACAGCCATCTTCACGCCAATTATTGACGCACTGCATAATCAACAGGTCATTGCCTATC
CGACCGAGGCGGTGTTTGGC

Product: DNA topoisomerase type IA Zn finger domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 180

Protein sequence:

>181_residues
MTKAAIFAARQNEPCPECGAELVIRSGRHGPFLGCTRYPECQHIRPLKAQADGHIVKMLDGQECPKCQATLALRQGRYGM
FIACSNYPECDHTEVIDKPDETSISCPQCEQGKLLQRKSRYGKVFHSCDRYPECQFVLNFKPVAGECEYCHYPLLMEKRT
AKGPTLCCASKLCGKPVVTTE

Sequences:

>Translated_181_residues
MTKAAIFAARQNEPCPECGAELVIRSGRHGPFLGCTRYPECQHIRPLKAQADGHIVKMLDGQECPKCQATLALRQGRYGM
FIACSNYPECDHTEVIDKPDETSISCPQCEQGKLLQRKSRYGKVFHSCDRYPECQFVLNFKPVAGECEYCHYPLLMEKRT
AKGPTLCCASKLCGKPVVTTE
>Mature_180_residues
TKAAIFAARQNEPCPECGAELVIRSGRHGPFLGCTRYPECQHIRPLKAQADGHIVKMLDGQECPKCQATLALRQGRYGMF
IACSNYPECDHTEVIDKPDETSISCPQCEQGKLLQRKSRYGKVFHSCDRYPECQFVLNFKPVAGECEYCHYPLLMEKRTA
KGPTLCCASKLCGKPVVTTE

Specific function: Unknown

COG id: COG0551

COG function: function code L; Zn-finger domain associated with topoisomerase type I

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0656.1 [H]

Homologues:

Organism=Escherichia coli, GI48994931, Length=177, Percent_Identity=71.7514124293785, Blast_Score=281, Evalue=2e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013498 [H]

Pfam domain/function: PF01396 zf-C4_Topoisom [H]

EC number: NA

Molecular weight: Translated: 20252; Mature: 20120

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
11.6 %Cys+Met (Translated Protein)
9.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
11.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKAAIFAARQNEPCPECGAELVIRSGRHGPFLGCTRYPECQHIRPLKAQADGHIVKMLD
CCCCEEEEECCCCCCHHHHHHHEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEC
GQECPKCQATLALRQGRYGMFIACSNYPECDHTEVIDKPDETSISCPQCEQGKLLQRKSR
CCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
YGKVFHSCDRYPECQFVLNFKPVAGECEYCHYPLLMEKRTAKGPTLCCASKLCGKPVVTT
HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCC
E
C
>Mature Secondary Structure 
TKAAIFAARQNEPCPECGAELVIRSGRHGPFLGCTRYPECQHIRPLKAQADGHIVKMLD
CCCEEEEECCCCCCHHHHHHHEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCEEEEEC
GQECPKCQATLALRQGRYGMFIACSNYPECDHTEVIDKPDETSISCPQCEQGKLLQRKSR
CCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
YGKVFHSCDRYPECQFVLNFKPVAGECEYCHYPLLMEKRTAKGPTLCCASKLCGKPVVTT
HHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHCCCCCCCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]