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The map label for this gene is rimN

Identifier: 157372740

GI number: 157372740

Start: 5000937

End: 5001506

Strand: Reverse

Name: rimN

Synonym: Spro_4507

Alternate gene names: 157372740

Gene position: 5001506-5000937 (Counterclockwise)

Preceding gene: 157372741

Following gene: 157372739

Centisome position: 91.79

GC content: 55.61

Gene sequence:

>570_bases
ATGAGCTCAGAATCCACAGCCATCTTCACGCCAATTATTGACGCACTGCATAATCAACAGGTCATTGCCTATCCGACCGA
GGCGGTGTTTGGCCTGGGTTGCGATCCCGACAGCGAGCAGGCGGTTAATGCCTTATTGGCACTGAAACAACGCCCATGGG
AAAAAGGATTGATCCTGATTGCAGCGGATTACGCACAGTTAACACCTTATATAGATGACACCGCGTTGAACGAACAGCAA
CGCGCTACGATGTTTGCCAGTTGGCCGGGGCCGGTGACCTGGGTGATCCCTGCCCGGTCGGAAACCTCGCGTTTGCTGAC
CGGCCGTTTCAATTCGTTGGCGGTACGTGTTAGCGATCATCCGTTGGTACAGCAACTTTGTCGGCAGTTTGGCAAACCGC
TGGTATCGACCAGCGCCAATCTCAGCGGGCAAGAGCCTTGCCGTAGTGCCGATGAAGTACAGCAGCAGTTTGGTGCCGCT
TTCCCGCTGCTGGCCGGTAGCGTCGGTGGCCGTCTTAACCCTTCCGAAATCAGAGATGTCCTGACCGGTGAGCAGATCCG
TCAAGGCTAG

Upstream 100 bases:

>100_bases
TATCCGTTGCTGATGGAAAAGCGCACGGCGAAAGGTCCAACCCTTTGCTGTGCCAGTAAACTTTGCGGGAAACCCGTAGT
AACCACAGAATAATGACATC

Downstream 100 bases:

>100_bases
AGGCAACGTGCATGGAGAAGTTTGCAGTATTCGGTAATCCTATCGGCCACAGCAAGTCACCGCGTATTCATGCGCTATTT
GCCGCGCAAACAGGGATAGA

Product: putative ribosome maturation factor

Products: NA

Alternate protein names: t(6)A37 threonylcarbamoyladenosine biosynthesis protein RimN

Number of amino acids: Translated: 189; Mature: 188

Protein sequence:

>189_residues
MSSESTAIFTPIIDALHNQQVIAYPTEAVFGLGCDPDSEQAVNALLALKQRPWEKGLILIAADYAQLTPYIDDTALNEQQ
RATMFASWPGPVTWVIPARSETSRLLTGRFNSLAVRVSDHPLVQQLCRQFGKPLVSTSANLSGQEPCRSADEVQQQFGAA
FPLLAGSVGGRLNPSEIRDVLTGEQIRQG

Sequences:

>Translated_189_residues
MSSESTAIFTPIIDALHNQQVIAYPTEAVFGLGCDPDSEQAVNALLALKQRPWEKGLILIAADYAQLTPYIDDTALNEQQ
RATMFASWPGPVTWVIPARSETSRLLTGRFNSLAVRVSDHPLVQQLCRQFGKPLVSTSANLSGQEPCRSADEVQQQFGAA
FPLLAGSVGGRLNPSEIRDVLTGEQIRQG
>Mature_188_residues
SSESTAIFTPIIDALHNQQVIAYPTEAVFGLGCDPDSEQAVNALLALKQRPWEKGLILIAADYAQLTPYIDDTALNEQQR
ATMFASWPGPVTWVIPARSETSRLLTGRFNSLAVRVSDHPLVQQLCRQFGKPLVSTSANLSGQEPCRSADEVQQQFGAAF
PLLAGSVGGRLNPSEIRDVLTGEQIRQG

Specific function: Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine

COG id: COG0009

COG function: function code J; Putative translation factor (SUA5)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 YrdC-like domain

Homologues:

Organism=Escherichia coli, GI2367210, Length=177, Percent_Identity=71.1864406779661, Blast_Score=263, Evalue=6e-72,
Organism=Escherichia coli, GI87081864, Length=143, Percent_Identity=27.972027972028, Blast_Score=67, Evalue=7e-13,
Organism=Drosophila melanogaster, GI78707274, Length=155, Percent_Identity=31.6129032258064, Blast_Score=64, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMN_SERP5 (A8GKG1)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001480729.1
- ProteinModelPortal:   A8GKG1
- SMR:   A8GKG1
- STRING:   A8GKG1
- GeneID:   5605843
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_4507
- eggNOG:   COG0009
- HOGENOM:   HBG738264
- OMA:   FGLGCNP
- ProtClustDB:   PRK10634
- BioCyc:   SPRO399741:SPRO_4507-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01852
- InterPro:   IPR017945
- InterPro:   IPR006070
- Gene3D:   G3DSA:3.90.870.10

Pfam domain/function: PF01300 Sua5_yciO_yrdC; SSF55821 DHBP_synth_RibB-like_a/b_dom

EC number: NA

Molecular weight: Translated: 20535; Mature: 20404

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS51163 YRDC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSESTAIFTPIIDALHNQQVIAYPTEAVFGLGCDPDSEQAVNALLALKQRPWEKGLILI
CCCCCCCHHHHHHHHHCCCEEEEECCHHEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEE
AADYAQLTPYIDDTALNEQQRATMFASWPGPVTWVIPARSETSRLLTGRFNSLAVRVSDH
EECHHHHCCCCCCHHCCCHHHHEEEEECCCCEEEEEECCCCHHHHHHCCCCEEEEEECCC
PLVQQLCRQFGKPLVSTSANLSGQEPCRSADEVQQQFGAAFPLLAGSVGGRLNPSEIRDV
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHH
LTGEQIRQG
HHHHHHHCC
>Mature Secondary Structure 
SSESTAIFTPIIDALHNQQVIAYPTEAVFGLGCDPDSEQAVNALLALKQRPWEKGLILI
CCCCCCHHHHHHHHHCCCEEEEECCHHEEECCCCCCHHHHHHHHHHHHHCCCCCCEEEE
AADYAQLTPYIDDTALNEQQRATMFASWPGPVTWVIPARSETSRLLTGRFNSLAVRVSDH
EECHHHHCCCCCCHHCCCHHHHEEEEECCCCEEEEEECCCCHHHHHHCCCCEEEEEECCC
PLVQQLCRQFGKPLVSTSANLSGQEPCRSADEVQQQFGAAFPLLAGSVGGRLNPSEIRDV
HHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHH
LTGEQIRQG
HHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA