Click here to switch to the map view.

The map label for this gene is ybaQ [H]

Identifier: 157372547

GI number: 157372547

Start: 4784608

End: 4784931

Strand: Direct

Name: ybaQ [H]

Synonym: Spro_4314

Alternate gene names: 157372547

Gene position: 4784608-4784931 (Clockwise)

Preceding gene: 157372546

Following gene: 157372548

Centisome position: 87.81

GC content: 55.25

Gene sequence:

>324_bases
ATGTTAGAGACCACAAGCCGAAAACCCACTACGGTGGGGGAAGTGCTGCAAGAAGAGTACTTAACACCGCTGGGTATCGG
CCAGGAGGATCTGGCCAAGGTCTTGGGCGTCACTCGCGCCACGGTAAACCGTTTATGCAATGGGCATCGCCGTCTCAGCG
TTGTGGAGGCAAACCTGTTTGCCGATCTTTTTGAAACCACTGCAGACTTTTGGCTAAACCTGCAGGCGGCCCACGACCGC
TGGGAAGCCCGACAGGCAAATATGCAGCGCGAGCGACTGCGTCCGATTATGGAAATTCTGGGGCGTGATATTACTCATGC
GTGA

Upstream 100 bases:

>100_bases
GGGTTAATATTCAATGGCGCTTAATGTTCCGCTGGCGCAATGATGCCGCCGATCTGATTTACCTGGACCCACATCAAGAT
ACCTAGGCAACGGAGAATAT

Downstream 100 bases:

>100_bases
AATCGAACTGACTTACCTGCAGGGTTACTCTGAACATCTGCAAAGCCAGGTGCAACAGTTGATCGACCAGCAGCGTCTGG
GTGAGGTGCTGTTACAGCGC

Product: XRE family plasmid maintenance system antidote protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MLETTSRKPTTVGEVLQEEYLTPLGIGQEDLAKVLGVTRATVNRLCNGHRRLSVVEANLFADLFETTADFWLNLQAAHDR
WEARQANMQRERLRPIMEILGRDITHA

Sequences:

>Translated_107_residues
MLETTSRKPTTVGEVLQEEYLTPLGIGQEDLAKVLGVTRATVNRLCNGHRRLSVVEANLFADLFETTADFWLNLQAAHDR
WEARQANMQRERLRPIMEILGRDITHA
>Mature_107_residues
MLETTSRKPTTVGEVLQEEYLTPLGIGQEDLAKVLGVTRATVNRLCNGHRRLSVVEANLFADLFETTADFWLNLQAAHDR
WEARQANMQRERLRPIMEILGRDITHA

Specific function: Unknown

COG id: COG3093

COG function: function code R; Plasmid maintenance system antidote protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081745, Length=105, Percent_Identity=42.8571428571429, Blast_Score=81, Evalue=1e-17,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013430
- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 12216; Mature: 12216

Theoretical pI: Translated: 6.25; Mature: 6.25

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLETTSRKPTTVGEVLQEEYLTPLGIGQEDLAKVLGVTRATVNRLCNGHRRLSVVEANLF
CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ADLFETTADFWLNLQAAHDRWEARQANMQRERLRPIMEILGRDITHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLETTSRKPTTVGEVLQEEYLTPLGIGQEDLAKVLGVTRATVNRLCNGHRRLSVVEANLF
CCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
ADLFETTADFWLNLQAAHDRWEARQANMQRERLRPIMEILGRDITHA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]