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The map label for this gene is yhjC [H]

Identifier: 157371963

GI number: 157371963

Start: 4115497

End: 4116390

Strand: Direct

Name: yhjC [H]

Synonym: Spro_3728

Alternate gene names: 157371963

Gene position: 4115497-4116390 (Clockwise)

Preceding gene: 157371959

Following gene: 157371966

Centisome position: 75.53

GC content: 60.07

Gene sequence:

>894_bases
ATGGACAGAATTGATGCCATGCGTCTGTTCACCCGCGTGGTGGAACAACGCAGCTTTACCCAGGCCGCGCAGGATCTGGC
TCTGCCACGTTCGACGGTGACCGATGCCATCAAACAACTGGAGGCCAGGTTGCAGGTGCGGCTGCTGCAGCGCACCACTC
GCCACGTCAGCCCAACGCTGGATGGCGAGGCTTACTATCAGCGCTGCCTGACTATTCTGGCGGATATCGAAGATGCCGAA
ATGGCCTTTGCCGGTGCAAAACCGCGTGGGTTGTTGCGCATTGATGTGCACGGCACGCTGGCCCGCCACTTTCTGCTGCC
GGGGTTGCCCGACTTTCTGGCGCAATATCCGGATATCGAATTGTTTATGAGCGAAGGCGATCGGCTGGTGGATCCGGTGC
GGGAAGGCATCGACTGCGTGATCCGCGTAGGTAAACTGAAAGACAGCGATATGGTGGCGCGTCGGCTGGGTGAGCTGGAA
GAAGTGACCTGCGCGGCACCGGACTATCTGCAACGCTTCGGCACGCCGCTTGGCATCGATGAACTTGAAGGGCACCGCAT
GGTGGGTTTTCGCTCCTCGGCCAGCGGCAGCATAATGCCACTGGAGTTTAACGTCGCAGGCCGGCCGCAGCAGCTAATAT
TGCCCTGCACGGTGTCGGTCAGCGCGGCGGAAAGCCTGGTGGCTGCGGCTCGTATGGGGTTGGGGATTATTCAGGTGCCG
CGCTATCACCTGCGCGACGATTTGGCCAGCGGCAGTCTGCTGCCGCTGTTACCACAATTCCCTTCCACGCCAATGCCGGT
ATCGCTGTTGTATCCCCGCAGCCGCCAACTTTCACCCCGGGTACGGGTATTTATCGACTGGTTCAGCAAGGTGTTCGCCG
CAGGCAACCACTAA

Upstream 100 bases:

>100_bases
CGCCGGCAGACTTGCTGGCGTGAGGTCATCATGCACCTTTCGCAATGGCGGATAATCCCCTAATCTTCGTTATCACTATT
CGAATCAAGCGAACAATCCC

Downstream 100 bases:

>100_bases
AAAACCACCCATAAGGGCGTAATGCCGGTCAGTTAAGCAAAGTTCTGAATCAGAATGTACGACGTTGTTTAAGTGGGCGT
CCCCCTCTCCAGAGGGAGAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MDRIDAMRLFTRVVEQRSFTQAAQDLALPRSTVTDAIKQLEARLQVRLLQRTTRHVSPTLDGEAYYQRCLTILADIEDAE
MAFAGAKPRGLLRIDVHGTLARHFLLPGLPDFLAQYPDIELFMSEGDRLVDPVREGIDCVIRVGKLKDSDMVARRLGELE
EVTCAAPDYLQRFGTPLGIDELEGHRMVGFRSSASGSIMPLEFNVAGRPQQLILPCTVSVSAAESLVAAARMGLGIIQVP
RYHLRDDLASGSLLPLLPQFPSTPMPVSLLYPRSRQLSPRVRVFIDWFSKVFAAGNH

Sequences:

>Translated_297_residues
MDRIDAMRLFTRVVEQRSFTQAAQDLALPRSTVTDAIKQLEARLQVRLLQRTTRHVSPTLDGEAYYQRCLTILADIEDAE
MAFAGAKPRGLLRIDVHGTLARHFLLPGLPDFLAQYPDIELFMSEGDRLVDPVREGIDCVIRVGKLKDSDMVARRLGELE
EVTCAAPDYLQRFGTPLGIDELEGHRMVGFRSSASGSIMPLEFNVAGRPQQLILPCTVSVSAAESLVAAARMGLGIIQVP
RYHLRDDLASGSLLPLLPQFPSTPMPVSLLYPRSRQLSPRVRVFIDWFSKVFAAGNH
>Mature_297_residues
MDRIDAMRLFTRVVEQRSFTQAAQDLALPRSTVTDAIKQLEARLQVRLLQRTTRHVSPTLDGEAYYQRCLTILADIEDAE
MAFAGAKPRGLLRIDVHGTLARHFLLPGLPDFLAQYPDIELFMSEGDRLVDPVREGIDCVIRVGKLKDSDMVARRLGELE
EVTCAAPDYLQRFGTPLGIDELEGHRMVGFRSSASGSIMPLEFNVAGRPQQLILPCTVSVSAAESLVAAARMGLGIIQVP
RYHLRDDLASGSLLPLLPQFPSTPMPVSLLYPRSRQLSPRVRVFIDWFSKVFAAGNH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=296, Percent_Identity=41.2162162162162, Blast_Score=215, Evalue=2e-57,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=34.8275862068965, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1789639, Length=298, Percent_Identity=33.8926174496644, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787128, Length=281, Percent_Identity=29.5373665480427, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI1787589, Length=280, Percent_Identity=28.9285714285714, Blast_Score=118, Evalue=4e-28,
Organism=Escherichia coli, GI87081978, Length=292, Percent_Identity=28.0821917808219, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=24.8251748251748, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788706, Length=289, Percent_Identity=24.5674740484429, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1789173, Length=142, Percent_Identity=28.169014084507, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788481, Length=285, Percent_Identity=23.859649122807, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786448, Length=287, Percent_Identity=24.390243902439, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI87082132, Length=292, Percent_Identity=24.6575342465753, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33037; Mature: 33037

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRIDAMRLFTRVVEQRSFTQAAQDLALPRSTVTDAIKQLEARLQVRLLQRTTRHVSPTL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGEAYYQRCLTILADIEDAEMAFAGAKPRGLLRIDVHGTLARHFLLPGLPDFLAQYPDIE
CHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCHHHHHHCCCEE
LFMSEGDRLVDPVREGIDCVIRVGKLKDSDMVARRLGELEEVTCAAPDYLQRFGTPLGID
EEECCCCHHHHHHHHHHHHEEHHCCCCCHHHHHHHHCCHHHHHCCCHHHHHHCCCCCCCH
ELEGHRMVGFRSSASGSIMPLEFNVAGRPQQLILPCTVSVSAAESLVAAARMGLGIIQVP
HCCCCEEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEECC
RYHLRDDLASGSLLPLLPQFPSTPMPVSLLYPRSRQLSPRVRVFIDWFSKVFAAGNH
CHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDRIDAMRLFTRVVEQRSFTQAAQDLALPRSTVTDAIKQLEARLQVRLLQRTTRHVSPTL
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
DGEAYYQRCLTILADIEDAEMAFAGAKPRGLLRIDVHGTLARHFLLPGLPDFLAQYPDIE
CHHHHHHHHHHHHHCCCHHHHHHCCCCCCCEEEEECCHHHHHHHHCCCCHHHHHHCCCEE
LFMSEGDRLVDPVREGIDCVIRVGKLKDSDMVARRLGELEEVTCAAPDYLQRFGTPLGID
EEECCCCHHHHHHHHHHHHEEHHCCCCCHHHHHHHHCCHHHHHCCCHHHHHHCCCCCCCH
ELEGHRMVGFRSSASGSIMPLEFNVAGRPQQLILPCTVSVSAAESLVAAARMGLGIIQVP
HCCCCEEEEEECCCCCCEEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHCCCEEECC
RYHLRDDLASGSLLPLLPQFPSTPMPVSLLYPRSRQLSPRVRVFIDWFSKVFAAGNH
CHHHHHHHCCCCCCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]