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The map label for this gene is yfhH [H]

Identifier: 157371897

GI number: 157371897

Start: 4055613

End: 4056461

Strand: Direct

Name: yfhH [H]

Synonym: Spro_3662

Alternate gene names: 157371897

Gene position: 4055613-4056461 (Clockwise)

Preceding gene: 157371893

Following gene: 157371898

Centisome position: 74.43

GC content: 53.71

Gene sequence:

>849_bases
ATGAGTACCCTTCTTCGTATTCGCCAGATGTATCCAACGCTGGCTCAAAATGATCGCAAGCTGGCGGACTTTCTGCTGCA
TAACGCCGAGCAGGCTCGCCATCTCAGTTCGCAAAAGCTGGCCCAACTGGCTGGCATCAGTCAGTCGAGCGTGGTGAAGT
TTGCTCAGAAGATGGGCTACAAAGGTTTCCCGGCACTAAAACTGGCGCTGAGCGAGACCCTGGCCCAACCGCAGACAGCT
CCCGTAGTTACAGTACATAACCAGATCCTCAGCAGTGATGCCTTGAAAACCGTTGGTGAAAAACTGTTGGTAGAAAAGCA
GGCAGCGCTGCGTGCCACGCTGGACATTAATAGTGAGGAACGCCTGCATCAGGCACTGGAAATGTTGCGTCAGGCGCGAA
GGGTTATTTTGTTGGGGATTGGCGCTTCCGGCCTGGTCGCCAAAGACTTCTCCTATAAGTTGCTTAAAATTGGCGTGATG
GCGGTAGCCGAGCAGGATATGCACGTCCAGTTGGCAACGGTTCAGGCGCTGGACAAGCGGGATTTGCTGTTGGCCATTTC
GTTCAGCGGCGAACGACGGGAAATCAACCTGGCGGCGGAAGAAGCCCGCCTGGCCGGTGCTAAAGTACTGGCGCTGACCA
GTTTCTCACCGAACGGCCTGCAGCAACGTGCCGACCACTGCTTATATACAATCGCCGAAGAACCCAACACCCGCAGCGCT
GCCATCTCTTCCAGCACCGCTCAATATGCCCTCACCGATCTGCTGTTTATGGCCTTAATTCAACACGATCTTGATCATGC
CCGCGATAGAATAAAACACAGCGAACAGTTAGTGAAAAAACTCGTCTAA

Upstream 100 bases:

>100_bases
TTTGCTATTTTAGAGACTGGCTCACAAAAAATTTTCACTGCGCGTTTTCGCCATCACCGTGGCAGAATAGCGTCTGGTTT
CCAGGGATATATCAATATCA

Downstream 100 bases:

>100_bases
GTCGTATAATGCCCATGCCACAAATACCAGAATATAAAAAACTCATCTAAAAATAGAGTACGTGGCGTTTATTGTTTAAA
TTCCGCCCAGAATTTAATCA

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MSTLLRIRQMYPTLAQNDRKLADFLLHNAEQARHLSSQKLAQLAGISQSSVVKFAQKMGYKGFPALKLALSETLAQPQTA
PVVTVHNQILSSDALKTVGEKLLVEKQAALRATLDINSEERLHQALEMLRQARRVILLGIGASGLVAKDFSYKLLKIGVM
AVAEQDMHVQLATVQALDKRDLLLAISFSGERREINLAAEEARLAGAKVLALTSFSPNGLQQRADHCLYTIAEEPNTRSA
AISSSTAQYALTDLLFMALIQHDLDHARDRIKHSEQLVKKLV

Sequences:

>Translated_282_residues
MSTLLRIRQMYPTLAQNDRKLADFLLHNAEQARHLSSQKLAQLAGISQSSVVKFAQKMGYKGFPALKLALSETLAQPQTA
PVVTVHNQILSSDALKTVGEKLLVEKQAALRATLDINSEERLHQALEMLRQARRVILLGIGASGLVAKDFSYKLLKIGVM
AVAEQDMHVQLATVQALDKRDLLLAISFSGERREINLAAEEARLAGAKVLALTSFSPNGLQQRADHCLYTIAEEPNTRSA
AISSSTAQYALTDLLFMALIQHDLDHARDRIKHSEQLVKKLV
>Mature_281_residues
STLLRIRQMYPTLAQNDRKLADFLLHNAEQARHLSSQKLAQLAGISQSSVVKFAQKMGYKGFPALKLALSETLAQPQTAP
VVTVHNQILSSDALKTVGEKLLVEKQAALRATLDINSEERLHQALEMLRQARRVILLGIGASGLVAKDFSYKLLKIGVMA
VAEQDMHVQLATVQALDKRDLLLAISFSGERREINLAAEEARLAGAKVLALTSFSPNGLQQRADHCLYTIAEEPNTRSAA
ISSSTAQYALTDLLFMALIQHDLDHARDRIKHSEQLVKKLV

Specific function: Unknown

COG id: COG1737

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI87082130, Length=282, Percent_Identity=65.6028368794326, Blast_Score=362, Evalue=1e-101,
Organism=Escherichia coli, GI1788767, Length=284, Percent_Identity=38.7323943661972, Blast_Score=192, Evalue=3e-50,
Organism=Escherichia coli, GI87082369, Length=284, Percent_Identity=23.943661971831, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1788159, Length=217, Percent_Identity=28.5714285714286, Blast_Score=88, Evalue=7e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000281
- InterPro:   IPR001347
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01418 HTH_6; PF01380 SIS [H]

EC number: NA

Molecular weight: Translated: 31080; Mature: 30949

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: PS51071 HTH_RPIR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTLLRIRQMYPTLAQNDRKLADFLLHNAEQARHLSSQKLAQLAGISQSSVVKFAQKMGY
CHHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
KGFPALKLALSETLAQPQTAPVVTVHNQILSSDALKTVGEKLLVEKQAALRATLDINSEE
CCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHH
RLHQALEMLRQARRVILLGIGASGLVAKDFSYKLLKIGVMAVAEQDMHVQLATVQALDKR
HHHHHHHHHHHHHHEEEEECCCCCCEECCCHHHHHHHHHHHHHCCCCEEEEHHHHHCCCC
DLLLAISFSGERREINLAAEEARLAGAKVLALTSFSPNGLQQRADHCLYTIAEEPNTRSA
CEEEEEEECCCCEEEEHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHEEEECCCCCCCHH
AISSSTAQYALTDLLFMALIQHDLDHARDRIKHSEQLVKKLV
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
STLLRIRQMYPTLAQNDRKLADFLLHNAEQARHLSSQKLAQLAGISQSSVVKFAQKMGY
HHHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
KGFPALKLALSETLAQPQTAPVVTVHNQILSSDALKTVGEKLLVEKQAALRATLDINSEE
CCCHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHH
RLHQALEMLRQARRVILLGIGASGLVAKDFSYKLLKIGVMAVAEQDMHVQLATVQALDKR
HHHHHHHHHHHHHHEEEEECCCCCCEECCCHHHHHHHHHHHHHCCCCEEEEHHHHHCCCC
DLLLAISFSGERREINLAAEEARLAGAKVLALTSFSPNGLQQRADHCLYTIAEEPNTRSA
CEEEEEEECCCCEEEEHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHEEEECCCCCCCHH
AISSSTAQYALTDLLFMALIQHDLDHARDRIKHSEQLVKKLV
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 1602968; 7984428 [H]