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The map label for this gene is ydcV [H]

Identifier: 157371878

GI number: 157371878

Start: 4030320

End: 4031126

Strand: Reverse

Name: ydcV [H]

Synonym: Spro_3643

Alternate gene names: 157371878

Gene position: 4031126-4030320 (Counterclockwise)

Preceding gene: 157371879

Following gene: 157371877

Centisome position: 73.98

GC content: 59.98

Gene sequence:

>807_bases
ATGCACTCTGAGCGCGCACCATTAGGGCTGAAACTGGCCGCCTGGGGCGGTCTGATCTTCCTGCATTTCCCGCTGGCGAT
TATCGCCATCTATGCCTTCAATACCGAGGACGCGGCGTTCAGCTTCCCGCCGAAGGGCTTTACGCTGCATTGGTTTAGTG
TCGCTGCCGGTCGGCAGGACATTATCGATGCGATGCTGCTTTCCGCGCAGATTGCTGCGCTGGCGACGGCGGTGGCGCTG
GTGCTGGGCACCCTGGCGGCGGCGGCGCTGTACCGGCGTGATTTCTTCGGTAAGGACAGCATTTCACTGTTGCTGCTGTT
ACCTATCGCGCTGCCGGGCATTGTTACCGGTCTGGCGCTGCTGGCGGCGTTCAAGGCGCTGAATATCGAGCCGGGAGTAC
TGACCATCGTGATCGGTCATGCCACCTTCTGCGTGGTGATCGTATTCAACAATGTCATCGCTCGTTTCCGCCGGACTTCC
CATAGCCTGATCGAGGCTTCCATGGATCTCGGTGCCGACGGTTGGCAAACCTTCCGCTACGTGATGCTGCCCAACCTGGG
TTCAGCATTGCTGGCCGGTGGCATGCTGGCGTTCGCACTGTCGTTTGATGAAATTATTGTCACCACCTTTACCGCCGGGC
ATGAGCGCACGCTGCCGCTGTGGCTGCTCAATCAGCTCGGTCGTCCGCGCGATGTGCCGATCACCAACGTGGTGGCGCTG
TCGGTGATGTTGCTGACCATGATCCCGATTTTGGGGGCCTATTACCTGACCAAGGGCGGCGAAAGCGTCGCCGGCAGCGG
CAAATAA

Upstream 100 bases:

>100_bases
GGGGCGATCGGCAATATGCCGATGGCAGCGGCCTTTACCCTGGTGCCGATTGTGTTGATCGCGATTTATCTTTCCATTGT
GAAACGTCTGGGGGCCTTCG

Downstream 100 bases:

>100_bases
ATAGCCTCTTGACCCTAATGCGTACCAGACATCTTATAAAAGGATAATCCTATGCAAAGCCAACTGTTGATTAACGGCCA
ACTGGTTACCGGCCAGGGCG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MHSERAPLGLKLAAWGGLIFLHFPLAIIAIYAFNTEDAAFSFPPKGFTLHWFSVAAGRQDIIDAMLLSAQIAALATAVAL
VLGTLAAAALYRRDFFGKDSISLLLLLPIALPGIVTGLALLAAFKALNIEPGVLTIVIGHATFCVVIVFNNVIARFRRTS
HSLIEASMDLGADGWQTFRYVMLPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPITNVVAL
SVMLLTMIPILGAYYLTKGGESVAGSGK

Sequences:

>Translated_268_residues
MHSERAPLGLKLAAWGGLIFLHFPLAIIAIYAFNTEDAAFSFPPKGFTLHWFSVAAGRQDIIDAMLLSAQIAALATAVAL
VLGTLAAAALYRRDFFGKDSISLLLLLPIALPGIVTGLALLAAFKALNIEPGVLTIVIGHATFCVVIVFNNVIARFRRTS
HSLIEASMDLGADGWQTFRYVMLPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPITNVVAL
SVMLLTMIPILGAYYLTKGGESVAGSGK
>Mature_268_residues
MHSERAPLGLKLAAWGGLIFLHFPLAIIAIYAFNTEDAAFSFPPKGFTLHWFSVAAGRQDIIDAMLLSAQIAALATAVAL
VLGTLAAAALYRRDFFGKDSISLLLLLPIALPGIVTGLALLAAFKALNIEPGVLTIVIGHATFCVVIVFNNVIARFRRTS
HSLIEASMDLGADGWQTFRYVMLPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPITNVVAL
SVMLLTMIPILGAYYLTKGGESVAGSGK

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787714, Length=262, Percent_Identity=82.0610687022901, Blast_Score=389, Evalue=1e-110,
Organism=Escherichia coli, GI1787368, Length=230, Percent_Identity=29.1304347826087, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787081, Length=256, Percent_Identity=32.8125, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1787080, Length=229, Percent_Identity=27.5109170305677, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28606; Mature: 28606

Theoretical pI: Translated: 8.48; Mature: 8.48

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHSERAPLGLKLAAWGGLIFLHFPLAIIAIYAFNTEDAAFSFPPKGFTLHWFSVAAGRQD
CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHEECCCCCCEECCCCCCEEEEEEECCCHHH
IIDAMLLSAQIAALATAVALVLGTLAAAALYRRDFFGKDSISLLLLLPIALPGIVTGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LAAFKALNIEPGVLTIVIGHATFCVVIVFNNVIARFRRTSHSLIEASMDLGADGWQTFRY
HHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHE
VMLPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPITNVVAL
EECCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHH
SVMLLTMIPILGAYYLTKGGESVAGSGK
HHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MHSERAPLGLKLAAWGGLIFLHFPLAIIAIYAFNTEDAAFSFPPKGFTLHWFSVAAGRQD
CCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHEECCCCCCEECCCCCCEEEEEEECCCHHH
IIDAMLLSAQIAALATAVALVLGTLAAAALYRRDFFGKDSISLLLLLPIALPGIVTGLAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
LAAFKALNIEPGVLTIVIGHATFCVVIVFNNVIARFRRTSHSLIEASMDLGADGWQTFRY
HHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHE
VMLPNLGSALLAGGMLAFALSFDEIIVTTFTAGHERTLPLWLLNQLGRPRDVPITNVVAL
EECCCCCHHHHHHHHHHHHHHHHHEEEEEEECCCCCCHHHHHHHHCCCCCCCCHHHHHHH
SVMLLTMIPILGAYYLTKGGESVAGSGK
HHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]