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The map label for this gene is ydcU [H]

Identifier: 157371879

GI number: 157371879

Start: 4031116

End: 4032060

Strand: Reverse

Name: ydcU [H]

Synonym: Spro_3644

Alternate gene names: 157371879

Gene position: 4032060-4031116 (Counterclockwise)

Preceding gene: 157371880

Following gene: 157371878

Centisome position: 74.0

GC content: 59.68

Gene sequence:

>945_bases
ATGGAGATGAGCATCGACTATCCCGCGCCGCGCCGCGGTACTCTGCGCGCCCTGTCGACCTTTCTCTATCGCCGGCCGAC
GCTGTACCTGTTGCTGTTATTGGTTCCACCGCTGTTGTGGTTCGGTGCGGTGTACCTTGGCTCATTACTGACGCTGCTGT
GGCAGGGATTTTATACTTTCGACGACTTCACCATGACGGTGACGCCGGATCTGACCTTCGATAACCTGCGGGCGCTGTTC
AACCCGGCCAACTACGACATTATTCTGCGCACATTGACCATGGCGGTGCTGGTGTCGCTGGCCAGTGCGGTATTGGCGTT
CCCGATTGCCTACTACATGGCGCGTTACACCAGTGGCCGCGTCAAAGCGTTCTTTTATATCGCGGTGATGATGCCGATGT
GGGCCAGCTATATCGTCAAGGCCTACGCCTGGACGCTGCTGCTGGCAAAGGATGGTGTGGCGCAGTGGTTCCTGCAACAT
CTGGGGCTGGAGCCGGTGTTGGCGGCAATCCTCACCGTGCCGGGCGTTGGAGGCAATACCCTGTCGACCTCGGGGCTGGG
GCGTTTTCTGGTGTTTGTTTATATCTGGCTGCCGTTCATGATCCTGCCGATCCAGGCGGCGCTGGAACGCCTGCCGCCTT
CGTTGCTGCATGCCTCGGCGGATTTGGGCGCGCGTCCATCGCAGACTTTCCGTTACGTGATCCTGCCGTTGGCGGTGCCG
GGCATTGCCGCCGGGTCGATCTTCACCTTCTCGCTGACGTTGGGGGACTTTATCGTGCCGCAGCTGGTGGGGCCGCCGGG
CTATTTCATCGGCAGCATGGTGTACGCCCAGCAAGGGGCGATCGGCAATATGCCGATGGCAGCGGCCTTTACCCTGGTGC
CGATTGTGTTGATCGCGATTTATCTTTCCATTGTGAAACGTCTGGGGGCCTTCGATGCACTCTGA

Upstream 100 bases:

>100_bases
CCTCAGTGGCATGCCGCCGGACAGCAGCATCTGATCGGTCAGCCGGTCACCGCCTGCTGGTCACGTGAGGCGATGGTGCC
ACTGCTGGAGGAGAGGTGAG

Downstream 100 bases:

>100_bases
GCGCGCACCATTAGGGCTGAAACTGGCCGCCTGGGGCGGTCTGATCTTCCTGCATTTCCCGCTGGCGATTATCGCCATCT
ATGCCTTCAATACCGAGGAC

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MEMSIDYPAPRRGTLRALSTFLYRRPTLYLLLLLVPPLLWFGAVYLGSLLTLLWQGFYTFDDFTMTVTPDLTFDNLRALF
NPANYDIILRTLTMAVLVSLASAVLAFPIAYYMARYTSGRVKAFFYIAVMMPMWASYIVKAYAWTLLLAKDGVAQWFLQH
LGLEPVLAAILTVPGVGGNTLSTSGLGRFLVFVYIWLPFMILPIQAALERLPPSLLHASADLGARPSQTFRYVILPLAVP
GIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGSMVYAQQGAIGNMPMAAAFTLVPIVLIAIYLSIVKRLGAFDAL

Sequences:

>Translated_314_residues
MEMSIDYPAPRRGTLRALSTFLYRRPTLYLLLLLVPPLLWFGAVYLGSLLTLLWQGFYTFDDFTMTVTPDLTFDNLRALF
NPANYDIILRTLTMAVLVSLASAVLAFPIAYYMARYTSGRVKAFFYIAVMMPMWASYIVKAYAWTLLLAKDGVAQWFLQH
LGLEPVLAAILTVPGVGGNTLSTSGLGRFLVFVYIWLPFMILPIQAALERLPPSLLHASADLGARPSQTFRYVILPLAVP
GIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGSMVYAQQGAIGNMPMAAAFTLVPIVLIAIYLSIVKRLGAFDAL
>Mature_314_residues
MEMSIDYPAPRRGTLRALSTFLYRRPTLYLLLLLVPPLLWFGAVYLGSLLTLLWQGFYTFDDFTMTVTPDLTFDNLRALF
NPANYDIILRTLTMAVLVSLASAVLAFPIAYYMARYTSGRVKAFFYIAVMMPMWASYIVKAYAWTLLLAKDGVAQWFLQH
LGLEPVLAAILTVPGVGGNTLSTSGLGRFLVFVYIWLPFMILPIQAALERLPPSLLHASADLGARPSQTFRYVILPLAVP
GIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGSMVYAQQGAIGNMPMAAAFTLVPIVLIAIYLSIVKRLGAFDAL

Specific function: Probably part of the binding-protein-dependent transport system ydcSTUV; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1176

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component I

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787713, Length=306, Percent_Identity=83.3333333333333, Blast_Score=497, Evalue=1e-142,
Organism=Escherichia coli, GI1787080, Length=242, Percent_Identity=30.1652892561983, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1787369, Length=259, Percent_Identity=30.1158301158301, Blast_Score=111, Evalue=6e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34573; Mature: 34573

Theoretical pI: Translated: 9.57; Mature: 9.57

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMSIDYPAPRRGTLRALSTFLYRRPTLYLLLLLVPPLLWFGAVYLGSLLTLLWQGFYTF
CCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
DDFTMTVTPDLTFDNLRALFNPANYDIILRTLTMAVLVSLASAVLAFPIAYYMARYTSGR
CCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VKAFFYIAVMMPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEPVLAAILTVPGVGGNT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
LSTSGLGRFLVFVYIWLPFMILPIQAALERLPPSLLHASADLGARPSQTFRYVILPLAVP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHEEEEHHCC
GIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGSMVYAQQGAIGNMPMAAAFTLVPIVLIAI
CCCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
YLSIVKRLGAFDAL
HHHHHHHHHHCCCC
>Mature Secondary Structure
MEMSIDYPAPRRGTLRALSTFLYRRPTLYLLLLLVPPLLWFGAVYLGSLLTLLWQGFYTF
CCCCCCCCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEE
DDFTMTVTPDLTFDNLRALFNPANYDIILRTLTMAVLVSLASAVLAFPIAYYMARYTSGR
CCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
VKAFFYIAVMMPMWASYIVKAYAWTLLLAKDGVAQWFLQHLGLEPVLAAILTVPGVGGNT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCCCCC
LSTSGLGRFLVFVYIWLPFMILPIQAALERLPPSLLHASADLGARPSQTFRYVILPLAVP
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCCHHHEEEEHHCC
GIAAGSIFTFSLTLGDFIVPQLVGPPGYFIGSMVYAQQGAIGNMPMAAAFTLVPIVLIAI
CCCCCCCEEEEEHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
YLSIVKRLGAFDAL
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]