| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is srlE [H]
Identifier: 157371805
GI number: 157371805
Start: 3947798
End: 3948778
Strand: Direct
Name: srlE [H]
Synonym: Spro_3570
Alternate gene names: 157371805
Gene position: 3947798-3948778 (Clockwise)
Preceding gene: 157371804
Following gene: 157371806
Centisome position: 72.45
GC content: 60.65
Gene sequence:
>981_bases ATGAGTGCTTTTATCCGTATTGAGAAAGGCGATAGCGGCTGGGGTGGCCCGTTGCAGTTACCGATCGAGCCGGGGAAAAA AGTGGTGTACATCACTGCCGGTACTCGCCCGTCGATCGTCGACCGGCTTAGCGAACTGACCGGCTGGCCGGCCGTCGATG GCTTTAAGGAAGGCGAACCACCGGCGGAAGAGATTGGCGTGATGGTCATTGACTGTGGCGGCACCCTGCGCTGCGGTCTG TACCCCAAACGCCGTATTCCGACGGTCAATATCCACGCTACCGGTCAATCCGGCCCGCTGGCGAAATTTATCCTCGAGGA TATTTACGTCTCCGGGGTACGCGACAGCAACATCAGCCGGGTTGAATCGGCAACAGAGACGGCGCAAGCGGCCCCCGCCC CGCAACCCAAGGGACGGGATTATGACACCAGCAAAAAAATCACTGAGCAGAGCGACGGCCTGTTGGCGAAAGTCGGCATG GGCATGGGTTCGGTGGTGGCGGTGTTCTTCCAGTCTGGCCGCGACACCATCGACACGGTACTGAAAACCATTCTGCCGTT TATGGCGTTCGTCTCGGCGCTGATCGGCATCATCATGGCCTCCGGCCTGGGGGATTTTATTGCCCACGGCCTGACGCCAT TGGCCAGCAGCCCGATTGGCCTGGTAACGCTGGCGCTGATTTGTTCCTTCCCGCTGCTGTCGCCGTTCCTCGGCCCTGGC GCGGTGATCGCTCAGGTGATCGGCGTATTGGTCGGGGTTCAGATTGGCCTGGGTCATATTCCACCCCAGTTGGCGCTGCC CGCGCTATTTGCAATTAACGCGCAGGCCGCCTGCGACTTTATCCCGGTCGGTCTGTCTCTGGCGGAAGCCAAACAGGACA CGGTGCGGGTCGGCGTGCCTTCGGTTCTGGTCGGACGTTTCCTGACCGGCGCACCTACGGTGCTGATCGCCTGGGCCGCC TCGGCCTTCATCTACCAATAA
Upstream 100 bases:
>100_bases TTTCCGCGGTTGGGTAACCGATCTCACCACCAGCCTGTTCGAACGCAAGATGGGCATCCGCCTGGACCGTCAGGTACAAC TTTAATCCGTGGAGTTCAGC
Downstream 100 bases:
>100_bases CTTTTACTGCCAGGGGCTAGCTATGAACACCATTTTCCAAACCACCATCACCCAGATTGGCGACAGTGCTCGCGAGGCGC TGCTGGACGACATGCTGATC
Product: PTS system glucitol/sorbitol-specific transporter subunit IIBC
Products: NA
Alternate protein names: EII-Gut; PTS system glucitol/sorbitol-specific EIIB component [H]
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MSAFIRIEKGDSGWGGPLQLPIEPGKKVVYITAGTRPSIVDRLSELTGWPAVDGFKEGEPPAEEIGVMVIDCGGTLRCGL YPKRRIPTVNIHATGQSGPLAKFILEDIYVSGVRDSNISRVESATETAQAAPAPQPKGRDYDTSKKITEQSDGLLAKVGM GMGSVVAVFFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDFIAHGLTPLASSPIGLVTLALICSFPLLSPFLGPG AVIAQVIGVLVGVQIGLGHIPPQLALPALFAINAQAACDFIPVGLSLAEAKQDTVRVGVPSVLVGRFLTGAPTVLIAWAA SAFIYQ
Sequences:
>Translated_326_residues MSAFIRIEKGDSGWGGPLQLPIEPGKKVVYITAGTRPSIVDRLSELTGWPAVDGFKEGEPPAEEIGVMVIDCGGTLRCGL YPKRRIPTVNIHATGQSGPLAKFILEDIYVSGVRDSNISRVESATETAQAAPAPQPKGRDYDTSKKITEQSDGLLAKVGM GMGSVVAVFFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDFIAHGLTPLASSPIGLVTLALICSFPLLSPFLGPG AVIAQVIGVLVGVQIGLGHIPPQLALPALFAINAQAACDFIPVGLSLAEAKQDTVRVGVPSVLVGRFLTGAPTVLIAWAA SAFIYQ >Mature_325_residues SAFIRIEKGDSGWGGPLQLPIEPGKKVVYITAGTRPSIVDRLSELTGWPAVDGFKEGEPPAEEIGVMVIDCGGTLRCGLY PKRRIPTVNIHATGQSGPLAKFILEDIYVSGVRDSNISRVESATETAQAAPAPQPKGRDYDTSKKITEQSDGLLAKVGMG MGSVVAVFFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDFIAHGLTPLASSPIGLVTLALICSFPLLSPFLGPGA VIAQVIGVLVGVQIGLGHIPPQLALPALFAINAQAACDFIPVGLSLAEAKQDTVRVGVPSVLVGRFLTGAPTVLIAWAAS AFIYQ
Specific function: The phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. This
COG id: COG3732
COG function: function code G; Phosphotransferase system sorbitol-specific component IIBC
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-5 domain [H]
Homologues:
Organism=Escherichia coli, GI48994905, Length=322, Percent_Identity=82.6086956521739, Blast_Score=533, Evalue=1e-153,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011638 - InterPro: IPR011618 - InterPro: IPR004702 [H]
Pfam domain/function: PF07663 EIIBC-GUT_C; PF03612 EIIBC-GUT_N [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 33986; Mature: 33855
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: PS00107 PROTEIN_KINASE_ATP ; PS51102 PTS_EIIB_TYPE_5
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAFIRIEKGDSGWGGPLQLPIEPGKKVVYITAGTRPSIVDRLSELTGWPAVDGFKEGEP CCCEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCC PAEEIGVMVIDCGGTLRCGLYPKRRIPTVNIHATGQSGPLAKFILEDIYVSGVRDSNISR CHHHCCEEEEECCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHH VESATETAQAAPAPQPKGRDYDTSKKITEQSDGLLAKVGMGMGSVVAVFFQSGRDTIDTV HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHH LKTILPFMAFVSALIGIIMASGLGDFIAHGLTPLASSPIGLVTLALICSFPLLSPFLGPG HHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCH AVIAQVIGVLVGVQIGLGHIPPQLALPALFAINAQAACDFIPVGLSLAEAKQDTVRVGVP HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHCCEEECCCHHHHHCCCCEECCCH SVLVGRFLTGAPTVLIAWAASAFIYQ HHHHHHHHCCCCHHHHHHHHHHHHCC >Mature Secondary Structure SAFIRIEKGDSGWGGPLQLPIEPGKKVVYITAGTRPSIVDRLSELTGWPAVDGFKEGEP CCEEEEECCCCCCCCCEEEECCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCC PAEEIGVMVIDCGGTLRCGLYPKRRIPTVNIHATGQSGPLAKFILEDIYVSGVRDSNISR CHHHCCEEEEECCCEEEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCHHH VESATETAQAAPAPQPKGRDYDTSKKITEQSDGLLAKVGMGMGSVVAVFFQSGRDTIDTV HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCHHHHHH LKTILPFMAFVSALIGIIMASGLGDFIAHGLTPLASSPIGLVTLALICSFPLLSPFLGPG HHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHCCCCHHHHHHHHHHHHHHHHHCCCCH AVIAQVIGVLVGVQIGLGHIPPQLALPALFAINAQAACDFIPVGLSLAEAKQDTVRVGVP HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHCCEEECCCHHHHHCCCCEECCCH SVLVGRFLTGAPTVLIAWAASAFIYQ HHHHHHHHCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 3553176; 9205837; 9278503 [H]