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The map label for this gene is ypdA [H]

Identifier: 157371641

GI number: 157371641

Start: 3764030

End: 3765721

Strand: Direct

Name: ypdA [H]

Synonym: Spro_3404

Alternate gene names: 157371641

Gene position: 3764030-3765721 (Clockwise)

Preceding gene: 157371640

Following gene: 157371642

Centisome position: 69.08

GC content: 56.32

Gene sequence:

>1692_bases
ATGCTGTTAGCGGTATTTGATCGCGCCGCGTTGATGTTGATCTGCCTGTTTTTCCTCACCCGCACCCGGTTGTTCCGCCA
GTTGCTGCAAAAAGAGGACCATACGCCGCTGGAGTTGGCCATGGTCACCGCCATCTTCTCGCTGTTTGCCCTGTTCAGCA
CCTATTCCGGCGTTAACGTTGAAGGTTCGCTGGTCAACGTACGGGTGATCGCCATCATGGCCGGCGGCATTCTGTTCGGC
CCCTGGGTGGGGATCATTACCGGCATCATTGCCGGGGTGCATCGCTACCTGATAGATATCGATGGCATTACCTCGGTTCC
CTGCCTGATCACCAGTATCATTGCCGGGATCGGTGCCGGGTATATCAACCTGAAGGTGAAGAAAGAACAGCGCTGGCGCG
CCGGGATCATCGGCGGCATGCTGTGTGAATGCCTGACCATGCTGCTGATCGTGCTGTGGGCCAGGCCGACCGAACTGGGG
CTGGATATCGTCTCCAAAATTGCCCTGCCGATGATCCTCGGCACGGTGTGCATTGGCCTGATCGTGCTGCTGGTGCAGAG
CGTGGAAGACGAAAAAGAAGTGATCGCTGCCCGCCAGGCCAAGCTGGCGCTGGATATTGCCCGCAAAACGCTGCCGTATT
TTCGCAATATCAACAGTGAAACGCTGGCCACCATCTGCGATATCATTCGCCAGGACATTCAGGCCGACGCGGTAGCCATC
ACCGATACCCATCAGGTGATGGCCTATGTCGGGGTGGGGGAAGAAGCCTACCCGATTGGCCGCGAAGGTCTGAGTCGCGT
GACCCGTGAAAGCATCCGGCACGGCAAGATCATCATCAAAAATAATCTGGAAAACCCGGCCACGCCGCAGATCCACTCGC
AATTGGTGATCCCGCTGTGGGAGAAAGGCGAAGTGACCGGCGCGCTGAAAATTTACTACTGCCACGCCCATCAGATCACC
AATACGCTGAAGGTGATGGCGGTCGGCCTGTCGCAGATTATCTCCACCCAAATGGAAGTCTCGCGCATTGAGCATCTGCG
CCAGATGGCGGACAAAGCGGAAATGCGCGCCCTGCAAAGCAAGATCAACCCGCACTTCCTTTTCAACGCGCTTAACGCCA
TTTCGTCCTCGATCCGCACCAATCCGGACACCGCGCGCCAACTGATTATCAACCTGTCACGCTACCTGCGTTATAACCTG
GAGCTGAATGACGAGTTAATCGACATCCGCAAAGAGTTGCACCAAATCCAGGATTATATTGCCATCGAACAGGCGCGCTT
CGGCGCCAAACTGACGGTGATTTATGACATCGATGACGATATTTCGGTACGCATCCCCAGCCTGCTGATCCAGCCACTGG
TGGAAAACGCCATCGTGCACGGTATCCAACCCTGTAAAGGCAAAGGCGTGGTGGTGATTGCGGTGAAAGATCAGGGTGAC
CGGGTCAAGATTTCAGTCAAAGATACCGGCCACGGCATCGACCCACAGGTCATCGAACGGGTGGCCCGCAACGAGATGCC
AGGACACAACATCGGTCTGCTGAACGTGCATCACCGGGTATCCCTGCTGTACGGCGAAGGGCTTCGCATCCGTCGCCTGG
AACCCGGCACCGAAATTGCCTTTTACATCAGCAAAAATGGCGGCAAACTGCCGGTAGAGAACAACATACTGCCGGCCGGG
GAGCTATCATGA

Upstream 100 bases:

>100_bases
CCGTGGCGCGCCGCCCGGCCGTCACGGGGTCAATTCGCTGTGATATACTCCCGGTATCTTTCCGCCGCAGCGAGAGCCCG
CCGTGCACCCCTTTTTTGAA

Downstream 100 bases:

>100_bases
AAGCCATCATCGTTGAAGACGAGTTCCTCGCGCAGGAAGAACTCAGTTACCTGATTAAAAAACACAGCAATATCGTTATC
GAAGCCATCTTCGAGGACGG

Product: signal transduction histidine kinase LytS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 563; Mature: 563

Protein sequence:

>563_residues
MLLAVFDRAALMLICLFFLTRTRLFRQLLQKEDHTPLELAMVTAIFSLFALFSTYSGVNVEGSLVNVRVIAIMAGGILFG
PWVGIITGIIAGVHRYLIDIDGITSVPCLITSIIAGIGAGYINLKVKKEQRWRAGIIGGMLCECLTMLLIVLWARPTELG
LDIVSKIALPMILGTVCIGLIVLLVQSVEDEKEVIAARQAKLALDIARKTLPYFRNINSETLATICDIIRQDIQADAVAI
TDTHQVMAYVGVGEEAYPIGREGLSRVTRESIRHGKIIIKNNLENPATPQIHSQLVIPLWEKGEVTGALKIYYCHAHQIT
NTLKVMAVGLSQIISTQMEVSRIEHLRQMADKAEMRALQSKINPHFLFNALNAISSSIRTNPDTARQLIINLSRYLRYNL
ELNDELIDIRKELHQIQDYIAIEQARFGAKLTVIYDIDDDISVRIPSLLIQPLVENAIVHGIQPCKGKGVVVIAVKDQGD
RVKISVKDTGHGIDPQVIERVARNEMPGHNIGLLNVHHRVSLLYGEGLRIRRLEPGTEIAFYISKNGGKLPVENNILPAG
ELS

Sequences:

>Translated_563_residues
MLLAVFDRAALMLICLFFLTRTRLFRQLLQKEDHTPLELAMVTAIFSLFALFSTYSGVNVEGSLVNVRVIAIMAGGILFG
PWVGIITGIIAGVHRYLIDIDGITSVPCLITSIIAGIGAGYINLKVKKEQRWRAGIIGGMLCECLTMLLIVLWARPTELG
LDIVSKIALPMILGTVCIGLIVLLVQSVEDEKEVIAARQAKLALDIARKTLPYFRNINSETLATICDIIRQDIQADAVAI
TDTHQVMAYVGVGEEAYPIGREGLSRVTRESIRHGKIIIKNNLENPATPQIHSQLVIPLWEKGEVTGALKIYYCHAHQIT
NTLKVMAVGLSQIISTQMEVSRIEHLRQMADKAEMRALQSKINPHFLFNALNAISSSIRTNPDTARQLIINLSRYLRYNL
ELNDELIDIRKELHQIQDYIAIEQARFGAKLTVIYDIDDDISVRIPSLLIQPLVENAIVHGIQPCKGKGVVVIAVKDQGD
RVKISVKDTGHGIDPQVIERVARNEMPGHNIGLLNVHHRVSLLYGEGLRIRRLEPGTEIAFYISKNGGKLPVENNILPAG
ELS
>Mature_563_residues
MLLAVFDRAALMLICLFFLTRTRLFRQLLQKEDHTPLELAMVTAIFSLFALFSTYSGVNVEGSLVNVRVIAIMAGGILFG
PWVGIITGIIAGVHRYLIDIDGITSVPCLITSIIAGIGAGYINLKVKKEQRWRAGIIGGMLCECLTMLLIVLWARPTELG
LDIVSKIALPMILGTVCIGLIVLLVQSVEDEKEVIAARQAKLALDIARKTLPYFRNINSETLATICDIIRQDIQADAVAI
TDTHQVMAYVGVGEEAYPIGREGLSRVTRESIRHGKIIIKNNLENPATPQIHSQLVIPLWEKGEVTGALKIYYCHAHQIT
NTLKVMAVGLSQIISTQMEVSRIEHLRQMADKAEMRALQSKINPHFLFNALNAISSSIRTNPDTARQLIINLSRYLRYNL
ELNDELIDIRKELHQIQDYIAIEQARFGAKLTVIYDIDDDISVRIPSLLIQPLVENAIVHGIQPCKGKGVVVIAVKDQGD
RVKISVKDTGHGIDPQVIERVARNEMPGHNIGLLNVHHRVSLLYGEGLRIRRLEPGTEIAFYISKNGGKLPVENNILPAG
ELS

Specific function: Unknown

COG id: COG3275

COG function: function code T; Putative regulator of cell autolysis

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788723, Length=544, Percent_Identity=76.4705882352941, Blast_Score=854, Evalue=0.0,
Organism=Escherichia coli, GI1788446, Length=511, Percent_Identity=28.9628180039139, Blast_Score=209, Evalue=3e-55,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR010559
- InterPro:   IPR011620 [H]

Pfam domain/function: PF07694 5TM-5TMR_LYT; PF02518 HATPase_c; PF06580 His_kinase [H]

EC number: 2.7.3.-

Molecular weight: Translated: 62385; Mature: 62385

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLAVFDRAALMLICLFFLTRTRLFRQLLQKEDHTPLELAMVTAIFSLFALFSTYSGVNV
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
EGSLVNVRVIAIMAGGILFGPWVGIITGIIAGVHRYLIDIDGITSVPCLITSIIAGIGAG
CCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
YINLKVKKEQRWRAGIIGGMLCECLTMLLIVLWARPTELGLDIVSKIALPMILGTVCIGL
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IVLLVQSVEDEKEVIAARQAKLALDIARKTLPYFRNINSETLATICDIIRQDIQADAVAI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEE
TDTHQVMAYVGVGEEAYPIGREGLSRVTRESIRHGKIIIKNNLENPATPQIHSQLVIPLW
ECHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHCEEEEEEE
EKGEVTGALKIYYCHAHQITNTLKVMAVGLSQIISTQMEVSRIEHLRQMADKAEMRALQS
CCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KINPHFLFNALNAISSSIRTNPDTARQLIINLSRYLRYNLELNDELIDIRKELHQIQDYI
HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHH
AIEQARFGAKLTVIYDIDDDISVRIPSLLIQPLVENAIVHGIQPCKGKGVVVIAVKDQGD
HHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
RVKISVKDTGHGIDPQVIERVARNEMPGHNIGLLNVHHRVSLLYGEGLRIRRLEPGTEIA
EEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEHHHEEEEEECCCEEEEEECCCCEEE
FYISKNGGKLPVENNILPAGELS
EEEECCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLLAVFDRAALMLICLFFLTRTRLFRQLLQKEDHTPLELAMVTAIFSLFALFSTYSGVNV
CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
EGSLVNVRVIAIMAGGILFGPWVGIITGIIAGVHRYLIDIDGITSVPCLITSIIAGIGAG
CCCEEEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCC
YINLKVKKEQRWRAGIIGGMLCECLTMLLIVLWARPTELGLDIVSKIALPMILGTVCIGL
EEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
IVLLVQSVEDEKEVIAARQAKLALDIARKTLPYFRNINSETLATICDIIRQDIQADAVAI
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCEEEE
TDTHQVMAYVGVGEEAYPIGREGLSRVTRESIRHGKIIIKNNLENPATPQIHSQLVIPLW
ECHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHCEEEEEEE
EKGEVTGALKIYYCHAHQITNTLKVMAVGLSQIISTQMEVSRIEHLRQMADKAEMRALQS
CCCCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KINPHFLFNALNAISSSIRTNPDTARQLIINLSRYLRYNLELNDELIDIRKELHQIQDYI
HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHHHH
AIEQARFGAKLTVIYDIDDDISVRIPSLLIQPLVENAIVHGIQPCKGKGVVVIAVKDQGD
HHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCC
RVKISVKDTGHGIDPQVIERVARNEMPGHNIGLLNVHHRVSLLYGEGLRIRRLEPGTEIA
EEEEEEECCCCCCCHHHHHHHHHCCCCCCCEEEEEHHHEEEEEECCCEEEEEECCCCEEE
FYISKNGGKLPVENNILPAGELS
EEEECCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]