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The map label for this gene is ypdB [H]

Identifier: 157371642

GI number: 157371642

Start: 3765718

End: 3766452

Strand: Direct

Name: ypdB [H]

Synonym: Spro_3405

Alternate gene names: 157371642

Gene position: 3765718-3766452 (Clockwise)

Preceding gene: 157371641

Following gene: 157371643

Centisome position: 69.11

GC content: 51.16

Gene sequence:

>735_bases
ATGAAAGCCATCATCGTTGAAGACGAGTTCCTCGCGCAGGAAGAACTCAGTTACCTGATTAAAAAACACAGCAATATCGT
TATCGAAGCCATCTTCGAGGACGGGCTGGACGTGCTGAAATACCTGCAGACCCATCAGGTTGACGCCATTTTTCTCGATA
TCAATATCCCGTCGCTGGACGGGGTACTGCTGGCGCAGAACATCAGCAAATTCGCACACCGTCCTTCTATTGTGTTTATC
ACCGCCTATAAAGAGCATGCGGTGGAAGCATTCGAAATCGAGGCCTTTGACTATATCCTCAAGCCCTATCACGAAGCGCG
TATCGTCACCATGCTGCAGAAGCTGGAAGCGCTGCATAACCGCCCCGCCACTTTACCGGAGCAGGCCAGCGCACCGAATC
GCAGCAGCCACAGCATTAACCTGATCAAAGACGAGCGGATTATCGTTACCGACATCAACGACATTTACTATGCCGCCGCC
GATGAGAAAGTGACGCGGGTTTATACCCGGCGCGAGGAGTTTGTGATGCCGATGAACCTGACAGAGTTTTACGGACGCCT
GCCTGAAGAGCATTTCTTCCGCTGCCACCGTTCCTACTGCGTCAATCTGTCTAAAATCCGCGAGATCGTGCCCTGGTTCA
ACAACACTTATATTCTGCGGCTGAGCGATCTGGATTTTGAAGTGCCGGTCAGCCGCAGCAAGGTGAAAGATTTTCGCAAA
CTGATGCGTTTATAA

Upstream 100 bases:

>100_bases
TCCGTCGCCTGGAACCCGGCACCGAAATTGCCTTTTACATCAGCAAAAATGGCGGCAAACTGCCGGTAGAGAACAACATA
CTGCCGGCCGGGGAGCTATC

Downstream 100 bases:

>100_bases
TCGCCAGCCGTTACCAGCGGCTACCGTCCAATAATGACCGTGATTATCGCGATCGCCTGCGGGTGATCGGCGATAAATCG
CTAACATTCTTGATTTAGAT

Product: LytTR family two component transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 244; Mature: 244

Protein sequence:

>244_residues
MKAIIVEDEFLAQEELSYLIKKHSNIVIEAIFEDGLDVLKYLQTHQVDAIFLDINIPSLDGVLLAQNISKFAHRPSIVFI
TAYKEHAVEAFEIEAFDYILKPYHEARIVTMLQKLEALHNRPATLPEQASAPNRSSHSINLIKDERIIVTDINDIYYAAA
DEKVTRVYTRREEFVMPMNLTEFYGRLPEEHFFRCHRSYCVNLSKIREIVPWFNNTYILRLSDLDFEVPVSRSKVKDFRK
LMRL

Sequences:

>Translated_244_residues
MKAIIVEDEFLAQEELSYLIKKHSNIVIEAIFEDGLDVLKYLQTHQVDAIFLDINIPSLDGVLLAQNISKFAHRPSIVFI
TAYKEHAVEAFEIEAFDYILKPYHEARIVTMLQKLEALHNRPATLPEQASAPNRSSHSINLIKDERIIVTDINDIYYAAA
DEKVTRVYTRREEFVMPMNLTEFYGRLPEEHFFRCHRSYCVNLSKIREIVPWFNNTYILRLSDLDFEVPVSRSKVKDFRK
LMRL
>Mature_244_residues
MKAIIVEDEFLAQEELSYLIKKHSNIVIEAIFEDGLDVLKYLQTHQVDAIFLDINIPSLDGVLLAQNISKFAHRPSIVFI
TAYKEHAVEAFEIEAFDYILKPYHEARIVTMLQKLEALHNRPATLPEQASAPNRSSHSINLIKDERIIVTDINDIYYAAA
DEKVTRVYTRREEFVMPMNLTEFYGRLPEEHFFRCHRSYCVNLSKIREIVPWFNNTYILRLSDLDFEVPVSRSKVKDFRK
LMRL

Specific function: Unknown

COG id: COG3279

COG function: function code KT; Response regulator of the LytR/AlgR family

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788724, Length=244, Percent_Identity=74.1803278688525, Blast_Score=373, Evalue=1e-105,
Organism=Escherichia coli, GI87082052, Length=249, Percent_Identity=31.3253012048193, Blast_Score=107, Evalue=8e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR007492
- InterPro:   IPR001789 [H]

Pfam domain/function: PF04397 LytTR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 28593; Mature: 28593

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50930 HTH_LYTTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAIIVEDEFLAQEELSYLIKKHSNIVIEAIFEDGLDVLKYLQTHQVDAIFLDINIPSLD
CCEEEECHHHHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHHCCCEEEEEEEECCCCC
GVLLAQNISKFAHRPSIVFITAYKEHAVEAFEIEAFDYILKPYHEARIVTMLQKLEALHN
CHHHHHHHHHHHCCCCEEEEEECHHHCCHHEEHHHHHHHHCCHHHHHHHHHHHHHHHHHC
RPATLPEQASAPNRSSHSINLIKDERIIVTDINDIYYAAADEKVTRVYTRREEFVMPMNL
CCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCEEEECCCHHHHHHHHHHHHEECCCCH
TEFYGRLPEEHFFRCHRSYCVNLSKIREIVPWFNNTYILRLSDLDFEVPVSRSKVKDFRK
HHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCCEECCCCHHHHHHHHH
LMRL
HHCC
>Mature Secondary Structure
MKAIIVEDEFLAQEELSYLIKKHSNIVIEAIFEDGLDVLKYLQTHQVDAIFLDINIPSLD
CCEEEECHHHHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHHCCCEEEEEEEECCCCC
GVLLAQNISKFAHRPSIVFITAYKEHAVEAFEIEAFDYILKPYHEARIVTMLQKLEALHN
CHHHHHHHHHHHCCCCEEEEEECHHHCCHHEEHHHHHHHHCCHHHHHHHHHHHHHHHHHC
RPATLPEQASAPNRSSHSINLIKDERIIVTDINDIYYAAADEKVTRVYTRREEFVMPMNL
CCCCCCCCCCCCCCCCCEEEEEECCEEEEEECCCEEEECCCHHHHHHHHHHHHEECCCCH
TEFYGRLPEEHFFRCHRSYCVNLSKIREIVPWFNNTYILRLSDLDFEVPVSRSKVKDFRK
HHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCEEEEEEECCCEECCCCHHHHHHHHH
LMRL
HHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]