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The map label for this gene is ycaN [H]

Identifier: 157371417

GI number: 157371417

Start: 3499042

End: 3499965

Strand: Direct

Name: ycaN [H]

Synonym: Spro_3178

Alternate gene names: 157371417

Gene position: 3499042-3499965 (Clockwise)

Preceding gene: 157371415

Following gene: 157371418

Centisome position: 64.22

GC content: 50.65

Gene sequence:

>924_bases
ATGCAGCCGAACTTTTCAGACTTTGCTTCGTTTATTGCCGTCGCACGCTACAAAAGTTTTCGGGAGGCGGGTGATGAGCT
GGGGTTATCCCCCTCCGCCATGAGTCATTCCATCAAGCAGCTGGAGCAGAGATTAAAGGTCCGTTTATTTAATCGCACCA
CTCGCAGCGTGGCGCTGACTGAAGCGGGATTAACCCTTTTTGAACGGCTGCGCCCGGTGTTTGATGAATTCAATACCATA
CTCGACGAAATGAATTGCTTTCGCGATGCCCCGATGGGCACTCTGAAAATCAATACTTCACGCCTGGCCTCACGTCTTTT
TCTATTGCCGATAATCGCCGGATTTAGCCGCAAATATCCGGACATAAAAGTGGAGATCACCACCGATGACAAGCTGGTGG
ACATTGTCCGACAGGAGTTCGATGCCGGGATCCGCCTGAATAACCGGGTAGAAAAAGACATGATTACCGTCCCTATCGGG
CCGAAAATCAAACTGGTGGTGGTCGCCACGCCTGAATACCTTAAGCATCATCCCGCACCGACGCATCCGTGCGAGCTGAT
TCATCACCAAAGCGTCATTTTTCGTTTCCAGAGCGGCCGCCCTTATCTCTGGGAATTTGAAAACCCATCAGGGAAACTTG
AAGTGGCTCCGGTTGGAAATATCATGCTCGACGATATGGATTCAGCGCTTGAGGCGGTTCTGTGCGGAGCCGGGCTGGGC
TATCTCTATTACGAACAGGTGAAAGAACATCTGCAAAGCGGCAAGCTCGCCAAGGTTCTGGACGATTGGCTCCCCGAACG
CCCATCCCTGCAACTCTATTATCCTAATCGCCAATATATGTCCGGCCCATTACGCGCTTTTATTGACTACATGAAAGAGA
CGCAGAGATCGGCTGAAAATAGTCATCAGGATAAGCAAATCTGA

Upstream 100 bases:

>100_bases
TAATTACCCTAATTATCCGTGAAAGAACTATTACTTTACGGCCGCAGGATAGTTGTGTAAAACGTAGTATTTGAGATGGG
TTATTGAGTAAAATTCACTA

Downstream 100 bases:

>100_bases
TCGCGGCAGTGAGTTTACCAACCTATGAGCTCCCTCCTGTATCTCCCTCTCAGCATTTTTCTGTCCTTTCCCCTGTATGA
GGCTTGTCACAAAACGCGCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MQPNFSDFASFIAVARYKSFREAGDELGLSPSAMSHSIKQLEQRLKVRLFNRTTRSVALTEAGLTLFERLRPVFDEFNTI
LDEMNCFRDAPMGTLKINTSRLASRLFLLPIIAGFSRKYPDIKVEITTDDKLVDIVRQEFDAGIRLNNRVEKDMITVPIG
PKIKLVVVATPEYLKHHPAPTHPCELIHHQSVIFRFQSGRPYLWEFENPSGKLEVAPVGNIMLDDMDSALEAVLCGAGLG
YLYYEQVKEHLQSGKLAKVLDDWLPERPSLQLYYPNRQYMSGPLRAFIDYMKETQRSAENSHQDKQI

Sequences:

>Translated_307_residues
MQPNFSDFASFIAVARYKSFREAGDELGLSPSAMSHSIKQLEQRLKVRLFNRTTRSVALTEAGLTLFERLRPVFDEFNTI
LDEMNCFRDAPMGTLKINTSRLASRLFLLPIIAGFSRKYPDIKVEITTDDKLVDIVRQEFDAGIRLNNRVEKDMITVPIG
PKIKLVVVATPEYLKHHPAPTHPCELIHHQSVIFRFQSGRPYLWEFENPSGKLEVAPVGNIMLDDMDSALEAVLCGAGLG
YLYYEQVKEHLQSGKLAKVLDDWLPERPSLQLYYPNRQYMSGPLRAFIDYMKETQRSAENSHQDKQI
>Mature_307_residues
MQPNFSDFASFIAVARYKSFREAGDELGLSPSAMSHSIKQLEQRLKVRLFNRTTRSVALTEAGLTLFERLRPVFDEFNTI
LDEMNCFRDAPMGTLKINTSRLASRLFLLPIIAGFSRKYPDIKVEITTDDKLVDIVRQEFDAGIRLNNRVEKDMITVPIG
PKIKLVVVATPEYLKHHPAPTHPCELIHHQSVIFRFQSGRPYLWEFENPSGKLEVAPVGNIMLDDMDSALEAVLCGAGLG
YLYYEQVKEHLQSGKLAKVLDDWLPERPSLQLYYPNRQYMSGPLRAFIDYMKETQRSAENSHQDKQI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787128, Length=303, Percent_Identity=63.036303630363, Blast_Score=403, Evalue=1e-114,
Organism=Escherichia coli, GI1787589, Length=289, Percent_Identity=34.9480968858132, Blast_Score=207, Evalue=9e-55,
Organism=Escherichia coli, GI1786401, Length=300, Percent_Identity=26.6666666666667, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI87081978, Length=291, Percent_Identity=26.1168384879725, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1789440, Length=289, Percent_Identity=26.9896193771626, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI145693193, Length=282, Percent_Identity=30.1418439716312, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1789639, Length=265, Percent_Identity=26.7924528301887, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1788706, Length=298, Percent_Identity=28.5234899328859, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI1788748, Length=123, Percent_Identity=39.8373983739837, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI157672245, Length=175, Percent_Identity=29.7142857142857, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI1786448, Length=135, Percent_Identity=34.0740740740741, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI145693105, Length=166, Percent_Identity=30.7228915662651, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1789173, Length=300, Percent_Identity=24.6666666666667, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786508, Length=129, Percent_Identity=29.4573643410853, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787601, Length=137, Percent_Identity=27.7372262773723, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35138; Mature: 35138

Theoretical pI: Translated: 7.25; Mature: 7.25

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPNFSDFASFIAVARYKSFREAGDELGLSPSAMSHSIKQLEQRLKVRLFNRTTRSVALT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
EAGLTLFERLRPVFDEFNTILDEMNCFRDAPMGTLKINTSRLASRLFLLPIIAGFSRKYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
DIKVEITTDDKLVDIVRQEFDAGIRLNNRVEKDMITVPIGPKIKLVVVATPEYLKHHPAP
CEEEEEECCHHHHHHHHHHHCCCCEECCCCCCCEEEECCCCCEEEEEEECHHHHHCCCCC
THPCELIHHQSVIFRFQSGRPYLWEFENPSGKLEVAPVGNIMLDDMDSALEAVLCGAGLG
CCHHHHHHHHHHEEEEECCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCH
YLYYEQVKEHLQSGKLAKVLDDWLPERPSLQLYYPNRQYMSGPLRAFIDYMKETQRSAEN
HHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEECCCHHHHCCHHHHHHHHHHHHHHHHHC
SHQDKQI
CCCCCCC
>Mature Secondary Structure
MQPNFSDFASFIAVARYKSFREAGDELGLSPSAMSHSIKQLEQRLKVRLFNRTTRSVALT
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
EAGLTLFERLRPVFDEFNTILDEMNCFRDAPMGTLKINTSRLASRLFLLPIIAGFSRKYP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHCCCCC
DIKVEITTDDKLVDIVRQEFDAGIRLNNRVEKDMITVPIGPKIKLVVVATPEYLKHHPAP
CEEEEEECCHHHHHHHHHHHCCCCEECCCCCCCEEEECCCCCEEEEEEECHHHHHCCCCC
THPCELIHHQSVIFRFQSGRPYLWEFENPSGKLEVAPVGNIMLDDMDSALEAVLCGAGLG
CCHHHHHHHHHHEEEEECCCCEEEEECCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCH
YLYYEQVKEHLQSGKLAKVLDDWLPERPSLQLYYPNRQYMSGPLRAFIDYMKETQRSAEN
HHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEEECCCHHHHCCHHHHHHHHHHHHHHHHHC
SHQDKQI
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]