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The map label for this gene is ltrA [H]

Identifier: 157371399

GI number: 157371399

Start: 3478583

End: 3479533

Strand: Direct

Name: ltrA [H]

Synonym: Spro_3160

Alternate gene names: 157371399

Gene position: 3478583-3479533 (Clockwise)

Preceding gene: 157371397

Following gene: 157371401

Centisome position: 63.84

GC content: 59.83

Gene sequence:

>951_bases
ATGGGCCTTTGCGCCGTGAGCACAAATCTCTCTCATTCGCTGCTGGCCGAAATGGCCGTTTTTGTTCAGGTCGTTGAGAG
CGGCAGTTTTTCCGCCGCTGCCCGTCGGCTGGGCACTTCCCCTTCTGCTGCCAGCCGCAGCGTGGCCAAACTCGAACAGG
CGTTGGCATTGCAACTGCTGCACCGCACCACGCGTAAACTGCGCCTGAGTGAACAAGGCGAAGAAGTGTTTCTGCGCTGT
CGCAGCATGTTAGACGCCGCGAACTCGGTCATGGCGTTCAGCGGCCGTGGGGCGGTGGAACCCGAAGGGCTGGTCAGCAT
CAGCGTCCCCAAGGCGGTGGGTCGCTTTGTGTTGCACCCGCACATACCGGAGTTTTTACGCCGTTATCCCAAGGTAGACG
TTCGCCTGCGGCTGGAAGATCGCTATATGGACCTGATTGACGATCGGGTCGATCTGGCGCTGCGTATTACCGAGCGCCCT
TCTCCCGGCTTGATTGGCCGCCAATTGATGACTATCGAACACCTGCTGTGCGCCACCCCCGGTTATCTGGCGCAGCACGG
CACGCCACAGCATCCGCAGGATTTGGCGCAGCACAGCTGCATTTATCTGGGGGAAACGCCCAACGACGCCCGCTGGAAAT
TCCGGCGAGAGGGTAAATCGGTGACGGTGAACGTACACGGACGCTATGCCGCCAACCACACCGGCGTGCGGCTGGATGCG
GTAAAACAGCACATTGGCATTGGCAGCCTGCCGTACTTTACTGCCCGGCAGGCGCTGGACAGCGGCGAAGTGGTGCAAGT
GTTGCCGGAATGGGATTTTCTCAGCAGTTACCACGGCGGCCTGTGGCTACTGTATGGCCCCAACCAGCACTTGCCGCCCA
AGCTGCGGGTGTTTATCGACTATCTGGTTGCCTGTTTGGCAAAAGAGCCGCAACTAAAGCGCCTTACGTAG

Upstream 100 bases:

>100_bases
CATCGCTATAATAATAAAGCCGTTCGGTCATGGTTTTTCTCCTGGTTAGTGGCTCCATTATATTCATGCCATAATCAAAG
CATAATCCATCAAAGATACA

Downstream 100 bases:

>100_bases
CGTGATGTTAATGCGGTGTGGCCCCACCAGCGAATGGTAACCCTCTTTAATTGGCATAATCCCGTGGAAGCACAGACGCG
ACGGGCCGCCCCACACCACC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MGLCAVSTNLSHSLLAEMAVFVQVVESGSFSAAARRLGTSPSAASRSVAKLEQALALQLLHRTTRKLRLSEQGEEVFLRC
RSMLDAANSVMAFSGRGAVEPEGLVSISVPKAVGRFVLHPHIPEFLRRYPKVDVRLRLEDRYMDLIDDRVDLALRITERP
SPGLIGRQLMTIEHLLCATPGYLAQHGTPQHPQDLAQHSCIYLGETPNDARWKFRREGKSVTVNVHGRYAANHTGVRLDA
VKQHIGIGSLPYFTARQALDSGEVVQVLPEWDFLSSYHGGLWLLYGPNQHLPPKLRVFIDYLVACLAKEPQLKRLT

Sequences:

>Translated_316_residues
MGLCAVSTNLSHSLLAEMAVFVQVVESGSFSAAARRLGTSPSAASRSVAKLEQALALQLLHRTTRKLRLSEQGEEVFLRC
RSMLDAANSVMAFSGRGAVEPEGLVSISVPKAVGRFVLHPHIPEFLRRYPKVDVRLRLEDRYMDLIDDRVDLALRITERP
SPGLIGRQLMTIEHLLCATPGYLAQHGTPQHPQDLAQHSCIYLGETPNDARWKFRREGKSVTVNVHGRYAANHTGVRLDA
VKQHIGIGSLPYFTARQALDSGEVVQVLPEWDFLSSYHGGLWLLYGPNQHLPPKLRVFIDYLVACLAKEPQLKRLT
>Mature_315_residues
GLCAVSTNLSHSLLAEMAVFVQVVESGSFSAAARRLGTSPSAASRSVAKLEQALALQLLHRTTRKLRLSEQGEEVFLRCR
SMLDAANSVMAFSGRGAVEPEGLVSISVPKAVGRFVLHPHIPEFLRRYPKVDVRLRLEDRYMDLIDDRVDLALRITERPS
PGLIGRQLMTIEHLLCATPGYLAQHGTPQHPQDLAQHSCIYLGETPNDARWKFRREGKSVTVNVHGRYAANHTGVRLDAV
KQHIGIGSLPYFTARQALDSGEVVQVLPEWDFLSSYHGGLWLLYGPNQHLPPKLRVFIDYLVACLAKEPQLKRLT

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081978, Length=297, Percent_Identity=31.3131313131313, Blast_Score=155, Evalue=2e-39,
Organism=Escherichia coli, GI1789440, Length=295, Percent_Identity=30.8474576271186, Blast_Score=149, Evalue=3e-37,
Organism=Escherichia coli, GI1787128, Length=290, Percent_Identity=29.6551724137931, Blast_Score=140, Evalue=9e-35,
Organism=Escherichia coli, GI1786401, Length=290, Percent_Identity=32.0689655172414, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=31.5068493150685, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI145693193, Length=303, Percent_Identity=28.7128712871287, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1787589, Length=292, Percent_Identity=28.4246575342466, Blast_Score=118, Evalue=5e-28,
Organism=Escherichia coli, GI1788706, Length=293, Percent_Identity=25.2559726962457, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789173, Length=312, Percent_Identity=26.6025641025641, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1788748, Length=151, Percent_Identity=33.7748344370861, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1786448, Length=286, Percent_Identity=26.2237762237762, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35157; Mature: 35026

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLCAVSTNLSHSLLAEMAVFVQVVESGSFSAAARRLGTSPSAASRSVAKLEQALALQLL
CCEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
HRTTRKLRLSEQGEEVFLRCRSMLDAANSVMAFSGRGAVEPEGLVSISVPKAVGRFVLHP
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEECHHHHHHHHCCC
HIPEFLRRYPKVDVRLRLEDRYMDLIDDRVDLALRITERPSPGLIGRQLMTIEHLLCATP
CHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
GYLAQHGTPQHPQDLAQHSCIYLGETPNDARWKFRREGKSVTVNVHGRYAANHTGVRLDA
CHHHCCCCCCCHHHHHHCCEEEECCCCCCCHHHEEECCCEEEEEEECEEECCCCCEEHHH
VKQHIGIGSLPYFTARQALDSGEVVQVLPEWDFLSSYHGGLWLLYGPNQHLPPKLRVFID
HHHHCCCCCCCHHHHHHHCCCCCEEEECCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHH
YLVACLAKEPQLKRLT
HHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GLCAVSTNLSHSLLAEMAVFVQVVESGSFSAAARRLGTSPSAASRSVAKLEQALALQLL
CEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
HRTTRKLRLSEQGEEVFLRCRSMLDAANSVMAFSGRGAVEPEGLVSISVPKAVGRFVLHP
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCEEEEECHHHHHHHHCCC
HIPEFLRRYPKVDVRLRLEDRYMDLIDDRVDLALRITERPSPGLIGRQLMTIEHLLCATP
CHHHHHHHCCCCEEEEEEHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC
GYLAQHGTPQHPQDLAQHSCIYLGETPNDARWKFRREGKSVTVNVHGRYAANHTGVRLDA
CHHHCCCCCCCHHHHHHCCEEEECCCCCCCHHHEEECCCEEEEEEECEEECCCCCEEHHH
VKQHIGIGSLPYFTARQALDSGEVVQVLPEWDFLSSYHGGLWLLYGPNQHLPPKLRVFID
HHHHCCCCCCCHHHHHHHCCCCCEEEECCCCHHHHCCCCCEEEEECCCCCCCHHHHHHHH
YLVACLAKEPQLKRLT
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]