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The map label for this gene is rarD [C]

Identifier: 157371401

GI number: 157371401

Start: 3480304

End: 3481188

Strand: Direct

Name: rarD [C]

Synonym: Spro_3162

Alternate gene names: 157371401

Gene position: 3480304-3481188 (Clockwise)

Preceding gene: 157371399

Following gene: 157371411

Centisome position: 63.87

GC content: 59.77

Gene sequence:

>885_bases
GTGATTAAAGGAATAGCGCTTTCCGTTATCGCCTCAATATTGTTCGGCGTGATGTATTACTACACTTCCACTCTGACGCC
GCTCGACGGTGAGCAAGTGTTTGGCTGGCGCACCCTGCTGACCGTGCCGTTTTTGACGCTGTTTATGCTGTTTTCCGCCG
ACTGGCGCAAGGTCAACGAGACGCTGTGCTGGATAAAACAACGACCGCGCCGCCTGCTGTTTCTGCCGCTGAGCTCAGCG
CTGTTGGGGGTTCAGCTGTGGTTGTTCCTGTGGGCGCCGCTGCACGGCAAAGCGCTGGAGGTGTCACTGGGCTATTTCCT
GCTGCCGCTGACCATGGTGCTGGCGGGGCGTTTGATCTTCCGCGATCGGCTTTCTTTACTGCAAAAACTGGCGGTTACCT
GCGCGATTATCGGCGTTGGTAATGAGCTGTATCAGGTGGGCGGCGTCTCCTGGACCACGCTGGTGGTGGCGCTGGGCTAT
CCGGTTTACTTTATTTTGCGCCGCCGTTTCGGCACCGACAACCTCGGTGGGCTGTGGTGTGAATTGACATTGATGTTACC
GGTGGCCGCCTGGTTCGCCTTCGGTGGCAACGGGCCGCTGGCGGCGCTGAGCATCAGCCCGGCGCTCTATTGGCAAGTTC
CGCTGCTGGGGATAATCAGCGCCGCCGCGCTGGTGTGTTATATCCTGGCCAGCCGCCTGCTGCCGTTCAGCCTGTTCGGC
CTGCTGAGCTACGTAGAGCCGGTGCTACTGGTGATCGTGGCGCTGCTACTTGGCGAAAGCATCGGCCGGGATGAATGGCT
GACCTATATTCCGATCTGGCTGGCGGTGCTGTTACTGGTATCGGAGGGCGCCCGTCACCTGGTTCGACGGCGACGGGCCT
TGTGA

Upstream 100 bases:

>100_bases
CGCCACTGCCGATTGTCCAGTGTGATACGCGGCATTGTTGTCAGCACCAAACTTCACTAGAGTGGGCGGCAATAAAATCA
ATAACTTTTCAGGACAGCCC

Downstream 100 bases:

>100_bases
TTAATGTGACAGCGCAACTTTTTCATTTCATTGATTATAAACAGATAAAAGTTGTGACATCGTCACCTTGTTGCCAATAA
CGACCGCCAAAACGGCGGCC

Product: transporter DMT superfamily protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MIKGIALSVIASILFGVMYYYTSTLTPLDGEQVFGWRTLLTVPFLTLFMLFSADWRKVNETLCWIKQRPRRLLFLPLSSA
LLGVQLWLFLWAPLHGKALEVSLGYFLLPLTMVLAGRLIFRDRLSLLQKLAVTCAIIGVGNELYQVGGVSWTTLVVALGY
PVYFILRRRFGTDNLGGLWCELTLMLPVAAWFAFGGNGPLAALSISPALYWQVPLLGIISAAALVCYILASRLLPFSLFG
LLSYVEPVLLVIVALLLGESIGRDEWLTYIPIWLAVLLLVSEGARHLVRRRRAL

Sequences:

>Translated_294_residues
MIKGIALSVIASILFGVMYYYTSTLTPLDGEQVFGWRTLLTVPFLTLFMLFSADWRKVNETLCWIKQRPRRLLFLPLSSA
LLGVQLWLFLWAPLHGKALEVSLGYFLLPLTMVLAGRLIFRDRLSLLQKLAVTCAIIGVGNELYQVGGVSWTTLVVALGY
PVYFILRRRFGTDNLGGLWCELTLMLPVAAWFAFGGNGPLAALSISPALYWQVPLLGIISAAALVCYILASRLLPFSLFG
LLSYVEPVLLVIVALLLGESIGRDEWLTYIPIWLAVLLLVSEGARHLVRRRRAL
>Mature_294_residues
MIKGIALSVIASILFGVMYYYTSTLTPLDGEQVFGWRTLLTVPFLTLFMLFSADWRKVNETLCWIKQRPRRLLFLPLSSA
LLGVQLWLFLWAPLHGKALEVSLGYFLLPLTMVLAGRLIFRDRLSLLQKLAVTCAIIGVGNELYQVGGVSWTTLVVALGY
PVYFILRRRFGTDNLGGLWCELTLMLPVAAWFAFGGNGPLAALSISPALYWQVPLLGIISAAALVCYILASRLLPFSLFG
LLSYVEPVLLVIVALLLGESIGRDEWLTYIPIWLAVLLLVSEGARHLVRRRRAL

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eamA transporter family [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=284, Percent_Identity=26.4084507042254, Blast_Score=106, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 32802; Mature: 32802

Theoretical pI: Translated: 9.81; Mature: 9.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIKGIALSVIASILFGVMYYYTSTLTPLDGEQVFGWRTLLTVPFLTLFMLFSADWRKVNE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLCWIKQRPRRLLFLPLSSALLGVQLWLFLWAPLHGKALEVSLGYFLLPLTMVLAGRLIF
HHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
RDRLSLLQKLAVTCAIIGVGNELYQVGGVSWTTLVVALGYPVYFILRRRFGTDNLGGLWC
HHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
ELTLMLPVAAWFAFGGNGPLAALSISPALYWQVPLLGIISAAALVCYILASRLLPFSLFG
HHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSYVEPVLLVIVALLLGESIGRDEWLTYIPIWLAVLLLVSEGARHLVRRRRAL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIKGIALSVIASILFGVMYYYTSTLTPLDGEQVFGWRTLLTVPFLTLFMLFSADWRKVNE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLCWIKQRPRRLLFLPLSSALLGVQLWLFLWAPLHGKALEVSLGYFLLPLTMVLAGRLIF
HHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHH
RDRLSLLQKLAVTCAIIGVGNELYQVGGVSWTTLVVALGYPVYFILRRRFGTDNLGGLWC
HHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH
ELTLMLPVAAWFAFGGNGPLAALSISPALYWQVPLLGIISAAALVCYILASRLLPFSLFG
HHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLSYVEPVLLVIVALLLGESIGRDEWLTYIPIWLAVLLLVSEGARHLVRRRRAL
HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11248100 [H]