| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is gcd [H]
Identifier: 157371339
GI number: 157371339
Start: 3409968
End: 3412343
Strand: Direct
Name: gcd [H]
Synonym: Spro_3100
Alternate gene names: 157371339
Gene position: 3409968-3412343 (Clockwise)
Preceding gene: 157371338
Following gene: 157371340
Centisome position: 62.58
GC content: 58.59
Gene sequence:
>2376_bases ATGCAAAATAAAGCATCATTGTCGCCGCTCATCATCATCACGGCATTATTTGCCGCGCTGAGCGGACTCTATCTGCTGGG AGGCGGCATCTGGCTGGCCAAGCTCGGCGGTTCGCTGTATTACATCATCGCCGGCCTGGTGTTGCTGGTTACCGCCTGGC TGTTGGCTCGCCGCCGCGCCACTGCCCTGCTGCTGTATGCCGTATTTTTACTCGGCACCACAATTTGGGCACTGTGGGAG GTCGGCCCGGACTTCTGGGCACTGACGCCGCGTCTGGACGTCACCTTCTTCTTCGGCCTGTGGCTGGTATTGCCGTTTAT CTATCACAAGCTGATTGCCAGCGGCAAGTTGGCCTACAGCGCACTGAGTATCGCGCTGGTGTTTACCGTCGCAGTACTGG CCTACGCGGTGTTTAACGATCCGCAAGAGATCAACGGCACCCTTGAACCGGCCCAGGTGAAGGTTGCCCCTCAGGCCTCA GACGCCGATTGGCCGGCCTATGGCCGTACTCAGGAAGGTACGCGTTATTCCCCACTGAGCCAGATCAACGACAAGAACGT CGGTCAGCTCAAGGAAGCCTGGACCTTCCAGACCGGCGACCTGAAAACCGCCAACGATCCAGGGGAAATCACCAACGAAG TGACCCCGATTAAAATCCGCGACACGCTCTATCTGTGTACCCCACACCAGAAACTGTTCGCGCTGGACGCGGCCACCGGT AAGCAAAAGTGGCAGTTTGATCCTCAGTTGAAGTTCAACCCAACCTTCCAGCACATCACCTGCCGTGGCGTCTCTTATCA TGAGACCCCTGCCGCCGCAGGCAACGCCACCGACGCCTCGCCGGCACAGTGCGCACGCCGCATTATCCTGCCGGTGAATG ATGGCCGCCTGTTTGCTTTGGATGCCGAGACCGGCAAGCCTTGCGCCGACTTCGCCAATAACGGTGAACTCAATCTGCAA AGCAATATGCCGTATGCCACTCCGGGCCATTATGAGCCGACTTCACCACCGGTGATCACCGATAAGGTGATTGTCATTGC CGGTGCGGTGACCGATAACTACTCCAATCGCGAACCTTCGGGCGTGATCCGCGGTTTTGACGTCAACAGTGGCAAACTGC TGTGGGCGTTTGATCCGGGTGCAGATGATCCCAACGCCATCCCGGCGGATGAACATCACTTCACGCCGAACTCGCCAAAC TCCTGGGCGCCTTCAGCCTACGATGCCAAGTTGGATATCGTTTACCTGCCAATGGGGGTGACCACTCCGGATATCTGGGG CGGCGATCGCACGCCGAACATGGAGCGCTACGCCAGCGGCCTGCTGGCATTGAACGCTTCTACCGGTAAGCTGGTGTGGT TCTATCAAACGGTGCACCACGACCTGTGGGATATGGACGTACCGGCCCAGCCGACGCTGGCGGATATCACCGACAAGAGC GGCAACAAGGTGCCGGTGATTTATGTACCGACCAAGACCGGTAACATTTTCGTTCTTAACCGTACCAACGGTGAGCTGGT GGTTCCTGCACCGGAAAAACCGGTTCCGCAAGGCCCGGCCAAGGGCGACCGCCTGTCACCGACTCAGCCTTTCTCTGAGC TGACTTTCCGCCCTGAGAAGAAACTGACCGGTGCGGATATGTGGGGCGCCACCATTTATGACCAACTGGTTTGCCGGGTG ATGTTCCACAGCCTGCGTTATGAAGGCACCTTCACCCCGCCTTCCGAACAGGGCACGTTGGTGTTCCCGGGTAACCTTGG CATGTTCGAATGGGGTGGCCTGTCTGTCGATACTGACCGTCAGGTGGCCATCGCCAACCCTATCGCGCTGCCGTTTGTGT CAAAACTGATCCCACGCGGCCCAGGTAACCCAATCGAGCCGCCGGTCGGCGATAAAGGCGGCAGCGGTACCGAAGCCGGC GTCCAGCCACAGTACGGTGTGCCGTTCGGCGTGACCCTGAACCCGTTCCTGTCGCCACTTGGCCTGCCGTGCAAACAGCC TGCCTGGGGTTACATTTCCGCGGTAGACCTGAAAACCAACGACATCGTGTGGAAAAAACGCATTGGTACCGTGCGCGACA GTTCACCGCTGCCGTTACCGTTCAAAATGGGGATGCCGATGTTGGGCGGGCCGGTCTCAACCGCCGGGAATGTGTTCTTC ATTGGCGCAACGGCGGACAACTACCTGCGTGCCTTCAGCGTGACCAACGGTGAAAAACTGTGGGAAGCACGCTTACCGGC CGGTGGCCAGGCGACGCCAATGACCTATGAGGTCAACGGCAAGCAGTACGTGGTGATTTCCGCCGGTGGCCATGGCTCGT TCGGCACCAAGCTGGGCGACTATATCGTTGCTTACGCACTGCCAGATGAGAAATAA
Upstream 100 bases:
>100_bases CCGAACGCACGGGATGGATTTTTAGGGAGAAACCGCGTGTTTTTTTGGATATGGCTTAATCTCTAAATCGGGGACTTTTC ATTTTGGTAAGGATAATACT
Downstream 100 bases:
>100_bases TCGTCGAGGATAGACCTATCACAGAGCACGCCGCCTGGCGTGCTCTTTCACCGTAAACACCCCGCAAAAACTTTTCACGC CAGACCGCCCTTTCCCACAA
Product: quinoprotein glucose dehydrogenase
Products: NA
Alternate protein names: Glucose dehydrogenase [pyrroloquinoline-quinone] [H]
Number of amino acids: Translated: 791; Mature: 791
Protein sequence:
>791_residues MQNKASLSPLIIITALFAALSGLYLLGGGIWLAKLGGSLYYIIAGLVLLVTAWLLARRRATALLLYAVFLLGTTIWALWE VGPDFWALTPRLDVTFFFGLWLVLPFIYHKLIASGKLAYSALSIALVFTVAVLAYAVFNDPQEINGTLEPAQVKVAPQAS DADWPAYGRTQEGTRYSPLSQINDKNVGQLKEAWTFQTGDLKTANDPGEITNEVTPIKIRDTLYLCTPHQKLFALDAATG KQKWQFDPQLKFNPTFQHITCRGVSYHETPAAAGNATDASPAQCARRIILPVNDGRLFALDAETGKPCADFANNGELNLQ SNMPYATPGHYEPTSPPVITDKVIVIAGAVTDNYSNREPSGVIRGFDVNSGKLLWAFDPGADDPNAIPADEHHFTPNSPN SWAPSAYDAKLDIVYLPMGVTTPDIWGGDRTPNMERYASGLLALNASTGKLVWFYQTVHHDLWDMDVPAQPTLADITDKS GNKVPVIYVPTKTGNIFVLNRTNGELVVPAPEKPVPQGPAKGDRLSPTQPFSELTFRPEKKLTGADMWGATIYDQLVCRV MFHSLRYEGTFTPPSEQGTLVFPGNLGMFEWGGLSVDTDRQVAIANPIALPFVSKLIPRGPGNPIEPPVGDKGGSGTEAG VQPQYGVPFGVTLNPFLSPLGLPCKQPAWGYISAVDLKTNDIVWKKRIGTVRDSSPLPLPFKMGMPMLGGPVSTAGNVFF IGATADNYLRAFSVTNGEKLWEARLPAGGQATPMTYEVNGKQYVVISAGGHGSFGTKLGDYIVAYALPDEK
Sequences:
>Translated_791_residues MQNKASLSPLIIITALFAALSGLYLLGGGIWLAKLGGSLYYIIAGLVLLVTAWLLARRRATALLLYAVFLLGTTIWALWE VGPDFWALTPRLDVTFFFGLWLVLPFIYHKLIASGKLAYSALSIALVFTVAVLAYAVFNDPQEINGTLEPAQVKVAPQAS DADWPAYGRTQEGTRYSPLSQINDKNVGQLKEAWTFQTGDLKTANDPGEITNEVTPIKIRDTLYLCTPHQKLFALDAATG KQKWQFDPQLKFNPTFQHITCRGVSYHETPAAAGNATDASPAQCARRIILPVNDGRLFALDAETGKPCADFANNGELNLQ SNMPYATPGHYEPTSPPVITDKVIVIAGAVTDNYSNREPSGVIRGFDVNSGKLLWAFDPGADDPNAIPADEHHFTPNSPN SWAPSAYDAKLDIVYLPMGVTTPDIWGGDRTPNMERYASGLLALNASTGKLVWFYQTVHHDLWDMDVPAQPTLADITDKS GNKVPVIYVPTKTGNIFVLNRTNGELVVPAPEKPVPQGPAKGDRLSPTQPFSELTFRPEKKLTGADMWGATIYDQLVCRV MFHSLRYEGTFTPPSEQGTLVFPGNLGMFEWGGLSVDTDRQVAIANPIALPFVSKLIPRGPGNPIEPPVGDKGGSGTEAG VQPQYGVPFGVTLNPFLSPLGLPCKQPAWGYISAVDLKTNDIVWKKRIGTVRDSSPLPLPFKMGMPMLGGPVSTAGNVFF IGATADNYLRAFSVTNGEKLWEARLPAGGQATPMTYEVNGKQYVVISAGGHGSFGTKLGDYIVAYALPDEK >Mature_791_residues MQNKASLSPLIIITALFAALSGLYLLGGGIWLAKLGGSLYYIIAGLVLLVTAWLLARRRATALLLYAVFLLGTTIWALWE VGPDFWALTPRLDVTFFFGLWLVLPFIYHKLIASGKLAYSALSIALVFTVAVLAYAVFNDPQEINGTLEPAQVKVAPQAS DADWPAYGRTQEGTRYSPLSQINDKNVGQLKEAWTFQTGDLKTANDPGEITNEVTPIKIRDTLYLCTPHQKLFALDAATG KQKWQFDPQLKFNPTFQHITCRGVSYHETPAAAGNATDASPAQCARRIILPVNDGRLFALDAETGKPCADFANNGELNLQ SNMPYATPGHYEPTSPPVITDKVIVIAGAVTDNYSNREPSGVIRGFDVNSGKLLWAFDPGADDPNAIPADEHHFTPNSPN SWAPSAYDAKLDIVYLPMGVTTPDIWGGDRTPNMERYASGLLALNASTGKLVWFYQTVHHDLWDMDVPAQPTLADITDKS GNKVPVIYVPTKTGNIFVLNRTNGELVVPAPEKPVPQGPAKGDRLSPTQPFSELTFRPEKKLTGADMWGATIYDQLVCRV MFHSLRYEGTFTPPSEQGTLVFPGNLGMFEWGGLSVDTDRQVAIANPIALPFVSKLIPRGPGNPIEPPVGDKGGSGTEAG VQPQYGVPFGVTLNPFLSPLGLPCKQPAWGYISAVDLKTNDIVWKKRIGTVRDSSPLPLPFKMGMPMLGGPVSTAGNVFF IGATADNYLRAFSVTNGEKLWEARLPAGGQATPMTYEVNGKQYVVISAGGHGSFGTKLGDYIVAYALPDEK
Specific function: GDH is probably involved in energy conservation rather than in sugar metabolism [H]
COG id: COG4993
COG function: function code G; Glucose dehydrogenase
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein; Periplasmic side [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial PQQ dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI1786316, Length=798, Percent_Identity=73.4335839598997, Blast_Score=1162, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017511 - InterPro: IPR019556 - InterPro: IPR019551 - InterPro: IPR018391 - InterPro: IPR002372 - InterPro: IPR011047 - InterPro: IPR001479 [H]
Pfam domain/function: PF01011 PQQ; PF10535 PQQ_C; PF10527 PQQ_N [H]
EC number: =1.1.5.2 [H]
Molecular weight: Translated: 85701; Mature: 85701
Theoretical pI: Translated: 6.16; Mature: 6.16
Prosite motif: PS00363 BACTERIAL_PQQ_1 ; PS00364 BACTERIAL_PQQ_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNKASLSPLIIITALFAALSGLYLLGGGIWLAKLGGSLYYIIAGLVLLVTAWLLARRRA CCCCCCCCHHHHHHHHHHHHHCCEECCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHH TALLLYAVFLLGTTIWALWEVGPDFWALTPRLDVTFFFGLWLVLPFIYHKLIASGKLAYS HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH ALSIALVFTVAVLAYAVFNDPQEINGTLEPAQVKVAPQASDADWPAYGRTQEGTRYSPLS HHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH QINDKNVGQLKEAWTFQTGDLKTANDPGEITNEVTPIKIRDTLYLCTPHQKLFALDAATG HCCCCCHHHHHHHHEEECCCCCCCCCCCHHHCCCCCEEEECEEEEECCCCEEEEEECCCC KQKWQFDPQLKFNPTFQHITCRGVSYHETPAAAGNATDASPAQCARRIILPVNDGRLFAL CCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCEEEEE DAETGKPCADFANNGELNLQSNMPYATPGHYEPTSPPVITDKVIVIAGAVTDNYSNREPS ECCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEECEEEEEEEEEECCCCCCCCC GVIRGFDVNSGKLLWAFDPGADDPNAIPADEHHFTPNSPNSWAPSAYDAKLDIVYLPMGV CEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC TTPDIWGGDRTPNMERYASGLLALNASTGKLVWFYQTVHHDLWDMDVPAQPTLADITDKS CCCCCCCCCCCCCHHHHHCCEEEEECCCCCEEEEEEEHHHHHHCCCCCCCCCHHHCCCCC GNKVPVIYVPTKTGNIFVLNRTNGELVVPAPEKPVPQGPAKGDRLSPTQPFSELTFRPEK CCEEEEEEEECCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC KLTGADMWGATIYDQLVCRVMFHSLRYEGTFTPPSEQGTLVFPGNLGMFEWGGLSVDTDR CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEECCCEEECCCC QVAIANPIALPFVSKLIPRGPGNPIEPPVGDKGGSGTEAGVQPQYGVPFGVTLNPFLSPL EEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC GLPCKQPAWGYISAVDLKTNDIVWKKRIGTVRDSSPLPLPFKMGMPMLGGPVSTAGNVFF CCCCCCCCCCEEEEEEECCCCEEEHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEE IGATADNYLRAFSVTNGEKLWEARLPAGGQATPMTYEVNGKQYVVISAGGHGSFGTKLGD EEECCCCEEEEEECCCCHHHHHCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCC YIVAYALPDEK EEEEEECCCCC >Mature Secondary Structure MQNKASLSPLIIITALFAALSGLYLLGGGIWLAKLGGSLYYIIAGLVLLVTAWLLARRRA CCCCCCCCHHHHHHHHHHHHHCCEECCCCEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHH TALLLYAVFLLGTTIWALWEVGPDFWALTPRLDVTFFFGLWLVLPFIYHKLIASGKLAYS HHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHH ALSIALVFTVAVLAYAVFNDPQEINGTLEPAQVKVAPQASDADWPAYGRTQEGTRYSPLS HHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCHH QINDKNVGQLKEAWTFQTGDLKTANDPGEITNEVTPIKIRDTLYLCTPHQKLFALDAATG HCCCCCHHHHHHHHEEECCCCCCCCCCCHHHCCCCCEEEECEEEEECCCCEEEEEECCCC KQKWQFDPQLKFNPTFQHITCRGVSYHETPAAAGNATDASPAQCARRIILPVNDGRLFAL CCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCEEEEEECCCEEEEE DAETGKPCADFANNGELNLQSNMPYATPGHYEPTSPPVITDKVIVIAGAVTDNYSNREPS ECCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCEEECEEEEEEEEEECCCCCCCCC GVIRGFDVNSGKLLWAFDPGADDPNAIPADEHHFTPNSPNSWAPSAYDAKLDIVYLPMGV CEEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCC TTPDIWGGDRTPNMERYASGLLALNASTGKLVWFYQTVHHDLWDMDVPAQPTLADITDKS CCCCCCCCCCCCCHHHHHCCEEEEECCCCCEEEEEEEHHHHHHCCCCCCCCCHHHCCCCC GNKVPVIYVPTKTGNIFVLNRTNGELVVPAPEKPVPQGPAKGDRLSPTQPFSELTFRPEK CCEEEEEEEECCCCCEEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCC KLTGADMWGATIYDQLVCRVMFHSLRYEGTFTPPSEQGTLVFPGNLGMFEWGGLSVDTDR CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCCCCEEECCCEEECCCC QVAIANPIALPFVSKLIPRGPGNPIEPPVGDKGGSGTEAGVQPQYGVPFGVTLNPFLSPL EEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCC GLPCKQPAWGYISAVDLKTNDIVWKKRIGTVRDSSPLPLPFKMGMPMLGGPVSTAGNVFF CCCCCCCCCCEEEEEEECCCCEEEHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEE IGATADNYLRAFSVTNGEKLWEARLPAGGQATPMTYEVNGKQYVVISAGGHGSFGTKLGD EEECCCCEEEEEECCCCHHHHHCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCCCCCCC YIVAYALPDEK EEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2228962; 8419307; 8202364; 9278503; 8509415; 8554505 [H]