Click here to switch to the map view.

The map label for this gene is yhjC [C]

Identifier: 157371299

GI number: 157371299

Start: 3370164

End: 3371096

Strand: Direct

Name: yhjC [C]

Synonym: Spro_3059

Alternate gene names: 157371299

Gene position: 3370164-3371096 (Clockwise)

Preceding gene: 157371296

Following gene: 157371304

Centisome position: 61.85

GC content: 60.45

Gene sequence:

>933_bases
ATGGACAAGCTAAACGCCATGCAGACTTTTGTTCGGGTAGCCGAGTTGGGCAGCCTGTCGGCCGCCGCTCGCGATCTGGG
CCTGACACAACCGGCGGTCAGCCAACAGATCGCCAGCCTGGAACAACAGCTGCGCGCACAACTGCTGTTTCGCAGCACCC
GCGCCGTAACGCTGACCGATGCCGGTGCGGGCTATTACCGACAAATCAAACCGATTCTGGCGGCGGTGGGTGAAGCAGAA
GAAGTGCTACATGGCCAAAACCTGCGGCTGCAGGGTTCGTTACGCATCCATGCACCAACAGGTTTCGGCCAACAACACCT
GACGCCGCTGGCGATCGCCTTTCAGCAACAGCATCCGCAACTGAACATCGAACTGTTGCTGGACGATCGTCGGGCGGATG
TGATCGGTGAAGGCATCGATGTAGCGATCCGCTTTGGCGAACTGAGTTCACCTGGCACGGTGGCGCGACGACTGGGAGAG
TTACAACGTATTCTGGTGGCCTCACCGGCTTACCTGGCAGCCCAGGGGGAACCGCAAACGCTGGCAGAGCTGGCAACCCA
TCCGCACATCCGTTACAGCGGCCTGAGCGACGCAGACACGCTGACGTTAATCGGCCCTCATGGCCCCGAGATGGTGGAGC
TGCGTCCGGTATTCCGTGCTAACAATACTTTTTCATTGCTGGCGGCGATTGAGTCGGGGCTGGGTATTGGCGGCGCACAG
CGGCCGTTGATCGGTCGGCAATTGGCGAGTGGCGCGTTGGTGCCCATTTTGCCGGCCTGGCGTTATCCGCCGATGGCGCT
GCATGCGGTGTATCCCGCGGCGCGCTTTATTCCCGGCAAAGTGCGGGCCTGGGTGGAGTATTTGCTGACGGCATTGGGGA
ACATTGAAGGCATGACGTTAAACTATGCCCCCGACCAGGCGCCGGAGGCATAA

Upstream 100 bases:

>100_bases
CAGTATCTATTGAGACTTTCACTATGATTTATTAGTTAAGCTTGCGGTAGATGAGGTTTATTACTATCACTTATAAGTAA
AATATATAGATGGAGGGCCG

Downstream 100 bases:

>100_bases
ACATTATTTGAACAGTTTACCGACCATATCGCCCAGTTCATTGCTGTCCTGCTGCACTTCGCCATTTGGCGATGCGGCGT
CAGCGACCGTTGGCAGGAAC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MDKLNAMQTFVRVAELGSLSAAARDLGLTQPAVSQQIASLEQQLRAQLLFRSTRAVTLTDAGAGYYRQIKPILAAVGEAE
EVLHGQNLRLQGSLRIHAPTGFGQQHLTPLAIAFQQQHPQLNIELLLDDRRADVIGEGIDVAIRFGELSSPGTVARRLGE
LQRILVASPAYLAAQGEPQTLAELATHPHIRYSGLSDADTLTLIGPHGPEMVELRPVFRANNTFSLLAAIESGLGIGGAQ
RPLIGRQLASGALVPILPAWRYPPMALHAVYPAARFIPGKVRAWVEYLLTALGNIEGMTLNYAPDQAPEA

Sequences:

>Translated_310_residues
MDKLNAMQTFVRVAELGSLSAAARDLGLTQPAVSQQIASLEQQLRAQLLFRSTRAVTLTDAGAGYYRQIKPILAAVGEAE
EVLHGQNLRLQGSLRIHAPTGFGQQHLTPLAIAFQQQHPQLNIELLLDDRRADVIGEGIDVAIRFGELSSPGTVARRLGE
LQRILVASPAYLAAQGEPQTLAELATHPHIRYSGLSDADTLTLIGPHGPEMVELRPVFRANNTFSLLAAIESGLGIGGAQ
RPLIGRQLASGALVPILPAWRYPPMALHAVYPAARFIPGKVRAWVEYLLTALGNIEGMTLNYAPDQAPEA
>Mature_310_residues
MDKLNAMQTFVRVAELGSLSAAARDLGLTQPAVSQQIASLEQQLRAQLLFRSTRAVTLTDAGAGYYRQIKPILAAVGEAE
EVLHGQNLRLQGSLRIHAPTGFGQQHLTPLAIAFQQQHPQLNIELLLDDRRADVIGEGIDVAIRFGELSSPGTVARRLGE
LQRILVASPAYLAAQGEPQTLAELATHPHIRYSGLSDADTLTLIGPHGPEMVELRPVFRANNTFSLLAAIESGLGIGGAQ
RPLIGRQLASGALVPILPAWRYPPMALHAVYPAARFIPGKVRAWVEYLLTALGNIEGMTLNYAPDQAPEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=290, Percent_Identity=35.5172413793103, Blast_Score=164, Evalue=5e-42,
Organism=Escherichia coli, GI1789639, Length=292, Percent_Identity=31.1643835616438, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI87081978, Length=289, Percent_Identity=33.5640138408304, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1786401, Length=281, Percent_Identity=31.6725978647687, Blast_Score=134, Evalue=1e-32,
Organism=Escherichia coli, GI1787128, Length=298, Percent_Identity=26.8456375838926, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1789440, Length=285, Percent_Identity=30.8771929824561, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1789173, Length=286, Percent_Identity=28.3216783216783, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787589, Length=190, Percent_Identity=30, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1788706, Length=257, Percent_Identity=27.2373540856031, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787601, Length=124, Percent_Identity=35.4838709677419, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI157672245, Length=240, Percent_Identity=31.25, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788297, Length=146, Percent_Identity=33.5616438356164, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788481, Length=257, Percent_Identity=28.0155642023346, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI145693105, Length=126, Percent_Identity=31.7460317460317, Blast_Score=64, Evalue=9e-12,
Organism=Escherichia coli, GI1786448, Length=255, Percent_Identity=25.0980392156863, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33385; Mature: 33385

Theoretical pI: Translated: 6.98; Mature: 6.98

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKLNAMQTFVRVAELGSLSAAARDLGLTQPAVSQQIASLEQQLRAQLLFRSTRAVTLTD
CCHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
AGAGYYRQIKPILAAVGEAEEVLHGQNLRLQGSLRIHAPTGFGQQHLTPLAIAFQQQHPQ
CCCCHHHHHHHHHHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCHHCCHHHHHHHHCCCC
LNIELLLDDRRADVIGEGIDVAIRFGELSSPGTVARRLGELQRILVASPAYLAAQGEPQT
EEEEEEEECCCHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCHHH
LAELATHPHIRYSGLSDADTLTLIGPHGPEMVELRPVFRANNTFSLLAAIESGLGIGGAQ
HHHHHCCCCEEECCCCCCCEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCC
RPLIGRQLASGALVPILPAWRYPPMALHAVYPAARFIPGKVRAWVEYLLTALGNIEGMTL
CCHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEE
NYAPDQAPEA
ECCCCCCCCC
>Mature Secondary Structure
MDKLNAMQTFVRVAELGSLSAAARDLGLTQPAVSQQIASLEQQLRAQLLFRSTRAVTLTD
CCHHHHHHHHHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEC
AGAGYYRQIKPILAAVGEAEEVLHGQNLRLQGSLRIHAPTGFGQQHLTPLAIAFQQQHPQ
CCCCHHHHHHHHHHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCHHCCHHHHHHHHCCCC
LNIELLLDDRRADVIGEGIDVAIRFGELSSPGTVARRLGELQRILVASPAYLAAQGEPQT
EEEEEEEECCCHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCHHH
LAELATHPHIRYSGLSDADTLTLIGPHGPEMVELRPVFRANNTFSLLAAIESGLGIGGAQ
HHHHHCCCCEEECCCCCCCEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHCCCCCCCC
RPLIGRQLASGALVPILPAWRYPPMALHAVYPAARFIPGKVRAWVEYLLTALGNIEGMTL
CCHHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEE
NYAPDQAPEA
ECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]