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The map label for this gene is rcsA [H]

Identifier: 157371290

GI number: 157371290

Start: 3362578

End: 3363207

Strand: Direct

Name: rcsA [H]

Synonym: Spro_3050

Alternate gene names: 157371290

Gene position: 3362578-3363207 (Clockwise)

Preceding gene: 157371289

Following gene: 157371294

Centisome position: 61.71

GC content: 40.79

Gene sequence:

>630_bases
ATGCCAACGATCATTATGGATTCATGCAGCTATACCAGATTGGGTTTAACAGACTACCTGACAACGCACGGAGTAAAAAA
ACGCCAGATTAATGCTATTGGTGATATCGACGATCTGCATGAAAAATGCAGCAAGTTGAAGCCTAGCCTGGTATTTATTA
ATGAAGACTGTTTTATACACGAAGCTAACGCGACGGAACGTATAAAAGGGGTGATATCACTGCACCCTGACACCTTATTC
TTCATCTTTATGGCCATCACCAACGTACATTTTGACGATTATTTATATGTTCGTAAAAATGTCATCATCTCGTCAAAATC
GATCAAACCAGAGACTATGAATCAACTACTTAGTCACTATCTGGAAAGAAAAGCTCCTCGCACTGAAAAAACCTCATTTG
ATCAGACTCCGGTTACGCTCAGCCAAACTGAATCAAACATGTTACGCATGTGGATGTCGGGTCAGGGCACCATCCAGATA
TCCGACCAGATGCAAATTAAAGCCAAAACCGTCTCTTCCCACAAGGGAAATATCAAAAGAAAAATTAAAACGCACAACAA
ACAGATTATTTATCATGTTGTTCGTTTGACCGACACGCTAACCAGCGGGATATTTGTCAATAGCCGCTAG

Upstream 100 bases:

>100_bases
ACATTCCTGGATGTGACTCTTTTTGTTCTTTTTTGCCTTTTAGGCTTCAGGCTTTTTCTTTTTGTTACCGCGGTAAAACG
GATTTAAGTGGGGGTGAGAT

Downstream 100 bases:

>100_bases
GTTTAAAGCTTTGTTGTGTACTCTGCCAAACGTTGGTTTTAAATGTTGTTCAGCACAGAGTGCTGGAAACCACGCATTTA
AATAACCTAAATACCTGCTC

Product: LuxR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MPTIIMDSCSYTRLGLTDYLTTHGVKKRQINAIGDIDDLHEKCSKLKPSLVFINEDCFIHEANATERIKGVISLHPDTLF
FIFMAITNVHFDDYLYVRKNVIISSKSIKPETMNQLLSHYLERKAPRTEKTSFDQTPVTLSQTESNMLRMWMSGQGTIQI
SDQMQIKAKTVSSHKGNIKRKIKTHNKQIIYHVVRLTDTLTSGIFVNSR

Sequences:

>Translated_209_residues
MPTIIMDSCSYTRLGLTDYLTTHGVKKRQINAIGDIDDLHEKCSKLKPSLVFINEDCFIHEANATERIKGVISLHPDTLF
FIFMAITNVHFDDYLYVRKNVIISSKSIKPETMNQLLSHYLERKAPRTEKTSFDQTPVTLSQTESNMLRMWMSGQGTIQI
SDQMQIKAKTVSSHKGNIKRKIKTHNKQIIYHVVRLTDTLTSGIFVNSR
>Mature_208_residues
PTIIMDSCSYTRLGLTDYLTTHGVKKRQINAIGDIDDLHEKCSKLKPSLVFINEDCFIHEANATERIKGVISLHPDTLFF
IFMAITNVHFDDYLYVRKNVIISSKSIKPETMNQLLSHYLERKAPRTEKTSFDQTPVTLSQTESNMLRMWMSGQGTIQIS
DQMQIKAKTVSSHKGNIKRKIKTHNKQIIYHVVRLTDTLTSGIFVNSR

Specific function: Positive regulator of capsular polysaccharide synthesis. RcsA and rcsB form a complex to promote transcription of the genes for capsule synthesis [H]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH luxR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788262, Length=210, Percent_Identity=68.0952380952381, Blast_Score=293, Evalue=5e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016032
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE [H]

EC number: NA

Molecular weight: Translated: 23977; Mature: 23846

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTIIMDSCSYTRLGLTDYLTTHGVKKRQINAIGDIDDLHEKCSKLKPSLVFINEDCFIH
CCEEEECCCCCEECCHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCCEEEEECCEEEE
EANATERIKGVISLHPDTLFFIFMAITNVHFDDYLYVRKNVIISSKSIKPETMNQLLSHY
ECCCHHHHEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHH
LERKAPRTEKTSFDQTPVTLSQTESNMLRMWMSGQGTIQISDQMQIKAKTVSSHKGNIKR
HHHCCCCCCCCCCCCCCEEEECCHHHHEEEEECCCCEEEECCCEEEEEEECCCCCCCHHH
KIKTHNKQIIYHVVRLTDTLTSGIFVNSR
HHHHCCHHHHHHHHHHHHHHHCCEEEECC
>Mature Secondary Structure 
PTIIMDSCSYTRLGLTDYLTTHGVKKRQINAIGDIDDLHEKCSKLKPSLVFINEDCFIH
CEEEECCCCCEECCHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCCEEEEECCEEEE
EANATERIKGVISLHPDTLFFIFMAITNVHFDDYLYVRKNVIISSKSIKPETMNQLLSHY
ECCCHHHHEEEEEECCHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCHHHHHHHHHHH
LERKAPRTEKTSFDQTPVTLSQTESNMLRMWMSGQGTIQISDQMQIKAKTVSSHKGNIKR
HHHCCCCCCCCCCCCCCEEEECCHHHHEEEEECCCCEEEECCCEEEEEEECCCCCCCHHH
KIKTHNKQIIYHVVRLTDTLTSGIFVNSR
HHHHCCHHHHHHHHHHHHHHHCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1896018 [H]