Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 157371287

GI number: 157371287

Start: 3358057

End: 3359445

Strand: Direct

Name: yfdE [H]

Synonym: Spro_3047

Alternate gene names: 157371287

Gene position: 3358057-3359445 (Clockwise)

Preceding gene: 157371286

Following gene: 157371289

Centisome position: 61.63

GC content: 62.49

Gene sequence:

>1389_bases
ATGGATACCCTTACTCAAACACTGCTCGCAGAAATCGGGCAAAGCTTCGGCCACGGCGACAACGCGCCAGCAATTGCGCT
GACGGTCGGCGGCGAAGGCAGCCTGAACAGCGCATTCCCGGTCAGCGAGCTGGCAACCGCCAGCCTGGGGGCCGCCGGGC
TGGCCTGCGCCCAACTGCTGCAACAAAATCAGGGCGGGAAACCGCAGGTGTTTGTCGACAGCCGGCTGGCGTCGCTGTGG
TTCGGCTGGACCTTACGGCCACTCGGGTGGTCATTGCCGGCCGCCTGGGACGCGCTGGCGGGTGACTATGCCACCAGGGA
TGGCTGGATCCGCCTGCATACCAATGCCCCTCATCACCGCAAAGCCGTAGAACAAGTGCTGGGCCCGCATCAGGATAAAA
ATACACTGGCGCAAAAGGTGCTGACGTGGAAAAAAGGTGAACTGGAGCAGGCAGTGATCGAGGCCGGCGGCTGCGCGGCT
GAAATGCGCTCAATCGAAGCATGGCGGCAACATATTCAGGGCAAGAGCGTTGCGCAGGAGCCGCTTTGCCATCAACGACA
ACAGGCGGAAGCTCCGCCCCCCGGCTGGGCGCTGCCTGCCGCCAGACCGCTGCACGGCGTGCGGGTGCTGGACTTGACGC
GAATTATCGCCGGGCCGGTCGCCACGCGCTTTCTTGCCGGTCTGGGGGCCGACGTATTACGCGTCGATCCCTACGGTTGG
GAAGAACCCGGCGTCGAACATGAAGTGATCCTCGGTAAGCGCTGCGCACGGCTGAACCTGAAAAACCCCCACGATCGCCA
CACCTTCGAGCATTTACTGAGAAACGCCGACGTTCTGGTTCATGGTTATCGCGCCGGGGCGCTGGAAAAACTGGGTTATG
GCGCAGAACAACGCCGCACACTATCGCCGGGATTGATCGACGTTTGCCTCAACGCCTATGGCTGGAGTGGCCCGTGGCGA
GGACGGCGTGGTTTCGACAGCCTGGTGCAAATGAGCTGTGGGCTGGCGGAATCCGGCATGCAATGGAAAAACGCCGCCGT
ACCTGTCCCCCTGCCGGTACAGGCTCTCGATCACGCAACCGGCTACCTGATGGCGACGGCGGTGCTGCACGGCATGCGTC
AACGCCTGCTACAGGGTACCGGCTACAGCGCCCGACTCTCCCTGGCACGGACGGCACAACTGCTGTTTGATAACCCTTAC
CCGCAACAGCATCCGTTAACGCCACTGGCTGCAGCCACCGCTGCGGATGAAAACCCGGAAACCGAGCTGACCCATTGGGG
GGCGGCACAACGCCTTATCGCGCCGCTACGGTTGAACGGCACAGCACTGCTCTGGGCATTGCCTGCGACAACCCTTGGCA
GTTCACAACCGCAATGGCTACGCCGTTAA

Upstream 100 bases:

>100_bases
AACTGGCGGACGGTCGCATCCTGAACATCACACCATAGCAACTCCGGTCGGGGTGAACTAGGCTAGGCACAGTCCCCCGA
CCGGCAACCTGGAGTTGATG

Downstream 100 bases:

>100_bases
ACTCAGGCCAGTTTCCGCTGCAACCAGTGCAATAATGCTTCGACCGCCGGCGTCAATCCGGCGGTTTGCGGCCAAACCAG
ATAAAAGTCTATCTGATCAA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MDTLTQTLLAEIGQSFGHGDNAPAIALTVGGEGSLNSAFPVSELATASLGAAGLACAQLLQQNQGGKPQVFVDSRLASLW
FGWTLRPLGWSLPAAWDALAGDYATRDGWIRLHTNAPHHRKAVEQVLGPHQDKNTLAQKVLTWKKGELEQAVIEAGGCAA
EMRSIEAWRQHIQGKSVAQEPLCHQRQQAEAPPPGWALPAARPLHGVRVLDLTRIIAGPVATRFLAGLGADVLRVDPYGW
EEPGVEHEVILGKRCARLNLKNPHDRHTFEHLLRNADVLVHGYRAGALEKLGYGAEQRRTLSPGLIDVCLNAYGWSGPWR
GRRGFDSLVQMSCGLAESGMQWKNAAVPVPLPVQALDHATGYLMATAVLHGMRQRLLQGTGYSARLSLARTAQLLFDNPY
PQQHPLTPLAAATAADENPETELTHWGAAQRLIAPLRLNGTALLWALPATTLGSSQPQWLRR

Sequences:

>Translated_462_residues
MDTLTQTLLAEIGQSFGHGDNAPAIALTVGGEGSLNSAFPVSELATASLGAAGLACAQLLQQNQGGKPQVFVDSRLASLW
FGWTLRPLGWSLPAAWDALAGDYATRDGWIRLHTNAPHHRKAVEQVLGPHQDKNTLAQKVLTWKKGELEQAVIEAGGCAA
EMRSIEAWRQHIQGKSVAQEPLCHQRQQAEAPPPGWALPAARPLHGVRVLDLTRIIAGPVATRFLAGLGADVLRVDPYGW
EEPGVEHEVILGKRCARLNLKNPHDRHTFEHLLRNADVLVHGYRAGALEKLGYGAEQRRTLSPGLIDVCLNAYGWSGPWR
GRRGFDSLVQMSCGLAESGMQWKNAAVPVPLPVQALDHATGYLMATAVLHGMRQRLLQGTGYSARLSLARTAQLLFDNPY
PQQHPLTPLAAATAADENPETELTHWGAAQRLIAPLRLNGTALLWALPATTLGSSQPQWLRR
>Mature_462_residues
MDTLTQTLLAEIGQSFGHGDNAPAIALTVGGEGSLNSAFPVSELATASLGAAGLACAQLLQQNQGGKPQVFVDSRLASLW
FGWTLRPLGWSLPAAWDALAGDYATRDGWIRLHTNAPHHRKAVEQVLGPHQDKNTLAQKVLTWKKGELEQAVIEAGGCAA
EMRSIEAWRQHIQGKSVAQEPLCHQRQQAEAPPPGWALPAARPLHGVRVLDLTRIIAGPVATRFLAGLGADVLRVDPYGW
EEPGVEHEVILGKRCARLNLKNPHDRHTFEHLLRNADVLVHGYRAGALEKLGYGAEQRRTLSPGLIDVCLNAYGWSGPWR
GRRGFDSLVQMSCGLAESGMQWKNAAVPVPLPVQALDHATGYLMATAVLHGMRQRLLQGTGYSARLSLARTAQLLFDNPY
PQQHPLTPLAAATAADENPETELTHWGAAQRLIAPLRLNGTALLWALPATTLGSSQPQWLRR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863124, Length=193, Percent_Identity=32.6424870466321, Blast_Score=94, Evalue=4e-19,
Organism=Homo sapiens, GI300863128, Length=193, Percent_Identity=32.6424870466321, Blast_Score=93, Evalue=4e-19,
Organism=Homo sapiens, GI300863126, Length=147, Percent_Identity=34.6938775510204, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI266456254, Length=183, Percent_Identity=32.2404371584699, Blast_Score=72, Evalue=2e-12,
Organism=Homo sapiens, GI266458393, Length=183, Percent_Identity=32.2404371584699, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI42794625, Length=183, Percent_Identity=32.2404371584699, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI266458397, Length=183, Percent_Identity=32.2404371584699, Blast_Score=71, Evalue=2e-12,
Organism=Escherichia coli, GI87082093, Length=150, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1788717, Length=160, Percent_Identity=28.125, Blast_Score=77, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI32564160, Length=125, Percent_Identity=32.8, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24648431, Length=188, Percent_Identity=34.0425531914894, Blast_Score=89, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24585488, Length=191, Percent_Identity=30.8900523560209, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 50103; Mature: 50103

Theoretical pI: Translated: 8.39; Mature: 8.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDTLTQTLLAEIGQSFGHGDNAPAIALTVGGEGSLNSAFPVSELATASLGAAGLACAQLL
CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHH
QQNQGGKPQVFVDSRLASLWFGWTLRPLGWSLPAAWDALAGDYATRDGWIRLHTNAPHHR
HHCCCCCCEEEEHHHHHHHHHCCEECCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCHHH
KAVEQVLGPHQDKNTLAQKVLTWKKGELEQAVIEAGGCAAEMRSIEAWRQHIQGKSVAQE
HHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHH
PLCHQRQQAEAPPPGWALPAARPLHGVRVLDLTRIIAGPVATRFLAGLGADVLRVDPYGW
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
EEPGVEHEVILGKRCARLNLKNPHDRHTFEHLLRNADVLVHGYRAGALEKLGYGAEQRRT
CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHCCCHHHCCC
LSPGLIDVCLNAYGWSGPWRGRRGFDSLVQMSCGLAESGMQWKNAAVPVPLPVQALDHAT
CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHCCCCCCCCCCCCCCCHHHHHHHH
GYLMATAVLHGMRQRLLQGTGYSARLSLARTAQLLFDNPYPQQHPLTPLAAATAADENPE
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCC
TELTHWGAAQRLIAPLRLNGTALLWALPATTLGSSQPQWLRR
CHHHHHHHHHHHHHHEEECCCEEEEECCHHHCCCCCCHHHCC
>Mature Secondary Structure
MDTLTQTLLAEIGQSFGHGDNAPAIALTVGGEGSLNSAFPVSELATASLGAAGLACAQLL
CCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCHHHHHHHHHH
QQNQGGKPQVFVDSRLASLWFGWTLRPLGWSLPAAWDALAGDYATRDGWIRLHTNAPHHR
HHCCCCCCEEEEHHHHHHHHHCCEECCCCCCCCHHHHHHHCCCCCCCCEEEEECCCCHHH
KAVEQVLGPHQDKNTLAQKVLTWKKGELEQAVIEAGGCAAEMRSIEAWRQHIQGKSVAQE
HHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHH
PLCHQRQQAEAPPPGWALPAARPLHGVRVLDLTRIIAGPVATRFLAGLGADVLRVDPYGW
HHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCC
EEPGVEHEVILGKRCARLNLKNPHDRHTFEHLLRNADVLVHGYRAGALEKLGYGAEQRRT
CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHCCCHHHCCC
LSPGLIDVCLNAYGWSGPWRGRRGFDSLVQMSCGLAESGMQWKNAAVPVPLPVQALDHAT
CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCHHCCCCCCCCCCCCCCCHHHHHHHH
GYLMATAVLHGMRQRLLQGTGYSARLSLARTAQLLFDNPYPQQHPLTPLAAATAADENPE
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCC
TELTHWGAAQRLIAPLRLNGTALLWALPATTLGSSQPQWLRR
CHHHHHHHHHHHHHHEEECCCEEEEECCHHHCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]