| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is fliF [H]
Identifier: 157371187
GI number: 157371187
Start: 3247217
End: 3248908
Strand: Direct
Name: fliF [H]
Synonym: Spro_2947
Alternate gene names: 157371187
Gene position: 3247217-3248908 (Clockwise)
Preceding gene: 157371184
Following gene: 157371188
Centisome position: 59.59
GC content: 59.63
Gene sequence:
>1692_bases ATGAGTGCTTCAATCTCCGCCACCGAAAGCCGCGATAATGGCCTGCAAGCCATGTGGAACCGTCTGCGCGCCAACCCGAA AATCCCACTGCTGATCGCCGCTTCCGCCGCCATCGCCATTGTGGTCGCGCTGCTGTTATGGGCAAAAAGTCCTGATTACC GGGTGCTGTACAGCAACATTAACGATCGCGACGGCGGTGCCATCGTCACCCAACTGACGCAGATGAACATCCCCTTCCGC TTTGCCGAAAATGGCGCGGCGCTGCTGATCCCGGCAGACAAAGTGCACGAAACCCGCCTGCGTCTGGCGCAGTTGGGCCT GCCGAAAGGCGGTGCCGTTGGCTTCGAACTGCTGGATCAGGAAAAATTCGGTATCAGCCAGTTCAGTGAGCAAATCAACT ACCAGCGCGCGCTGGAAGGCGAATTGTCACGCACCATCGAATCGCTGGGGCCGGTACAAAACGCCCGGGTGCATCTGGCT CTGCCAAAACCCTCGCTGTTCGTGCGCGAGCAAAAATCCCCTTCCGCCTCGGTGACACTGACGCTGCAACCCGGCCGCGC GTTGGATGACGGCCAGATCAATGCCATCGTTTATATGGTCTCGAGCAGCGTCGCCGGCCTGCCGCCGGGCAACGTGACCG TGGTCGATCAATCCGGTCGCCTGCTGACCCAGTCTGACGGTGCCGGGCGCGATCTGAACGCCGCTCAGCTCAAGTACGCC AACGAAGTGGAAAGCCGCTATCAACGTCGCATCGAAGCGATTTTGGCACCGATGGTCGGTAACGGTAACGCGCGCGCCCA GGTCACTGCGCAGATTGATTTTGCCACCCGCGAGCAAACCGACGAAGAATACCAACCGAACCAACTGCCGAATAAGGCCG CCGTCCGTTCCAAACAGATGAGTCAAAGCGATCAAATTGGCGGACCACTGGTCGGTGGCGTACCGGGTGCCTTGTCCAAT CAGCCTAGCGCTCCAGCGACCGCGCCGATTGAAACCGCCAAACCGGCGGCCACCGGCAACAACGCCAACGCCACCCAGCC CAATGCCGCGGCAACCCGCAGCGCAGCCTCGGGGCCGCAGAATTCACGCCTGGATGAAACCACCAACTACGAAGTCGATC GCACCATCCGCCATACCCAGCAAAAAGCCGGGACGGTACAGCGGTTGTCGGTGGCAGTGGTGGTTAACTATCGCGGTACG GATAAAGACGGCAAACCACTGCCGATGAGTAAAGAGCAGTTGGCGCAGATCGAATCGCTGGTGCGCGAGTCCATGGGTTT CTCCAGCACCCGCGGCGACACGCTCAACGTGGTCAACACGCCGTTTACCGATAACGAAGTCACCGGCGGTGAGCTGCCGT TCTGGCAAAGCCAGGCGTTTATCGATCGTCTGTTCGACGCCGGTCGCTATCTGCTGGTCCTGCTGGTCGGCTGGTTGCTA TGGCGCAAACTGGTACGTCCGCAGCTGCAAAACCGTCAGGCCGTACAAAAAGCCGCTATCGCCGCCGCCAATACGCCAAT GGCCAAACCGGCAGAGAGCAATAAACAGAGTAACGAGGAGCTGGCGCAGCACCGTAAATCACAACAGCGCGTCAGTGCAG AAGTCCAGAGCCAGCGGATCCGCGATCTGGCTGATAAAGACCCACGCGTGGTCGCTCTGGTAATCCGCCAATGGATGAGC AACGAATTATGA
Upstream 100 bases:
>100_bases TTTTGTCACACAACGCTAACCACATCGTTCATCAGCCTGGCAGGGAGCTACGCCGTGGCCCGAACCGGATCCTGAGCGTC ATTGAAGGACACTGGCTAAA
Downstream 100 bases:
>100_bases GTCTGACCGGAACCGAAAAAAGCGCCATCCTGCTGATGACCCTGGGTGAAGATCGCGCCGCCGAGGTGTTCAAACACCTC TCATCGCGGGAAGTCCAGCA
Product: flagellar MS-ring protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 563; Mature: 562
Protein sequence:
>563_residues MSASISATESRDNGLQAMWNRLRANPKIPLLIAASAAIAIVVALLLWAKSPDYRVLYSNINDRDGGAIVTQLTQMNIPFR FAENGAALLIPADKVHETRLRLAQLGLPKGGAVGFELLDQEKFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLA LPKPSLFVREQKSPSASVTLTLQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQSGRLLTQSDGAGRDLNAAQLKYA NEVESRYQRRIEAILAPMVGNGNARAQVTAQIDFATREQTDEEYQPNQLPNKAAVRSKQMSQSDQIGGPLVGGVPGALSN QPSAPATAPIETAKPAATGNNANATQPNAAATRSAASGPQNSRLDETTNYEVDRTIRHTQQKAGTVQRLSVAVVVNYRGT DKDGKPLPMSKEQLAQIESLVRESMGFSSTRGDTLNVVNTPFTDNEVTGGELPFWQSQAFIDRLFDAGRYLLVLLVGWLL WRKLVRPQLQNRQAVQKAAIAAANTPMAKPAESNKQSNEELAQHRKSQQRVSAEVQSQRIRDLADKDPRVVALVIRQWMS NEL
Sequences:
>Translated_563_residues MSASISATESRDNGLQAMWNRLRANPKIPLLIAASAAIAIVVALLLWAKSPDYRVLYSNINDRDGGAIVTQLTQMNIPFR FAENGAALLIPADKVHETRLRLAQLGLPKGGAVGFELLDQEKFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLA LPKPSLFVREQKSPSASVTLTLQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQSGRLLTQSDGAGRDLNAAQLKYA NEVESRYQRRIEAILAPMVGNGNARAQVTAQIDFATREQTDEEYQPNQLPNKAAVRSKQMSQSDQIGGPLVGGVPGALSN QPSAPATAPIETAKPAATGNNANATQPNAAATRSAASGPQNSRLDETTNYEVDRTIRHTQQKAGTVQRLSVAVVVNYRGT DKDGKPLPMSKEQLAQIESLVRESMGFSSTRGDTLNVVNTPFTDNEVTGGELPFWQSQAFIDRLFDAGRYLLVLLVGWLL WRKLVRPQLQNRQAVQKAAIAAANTPMAKPAESNKQSNEELAQHRKSQQRVSAEVQSQRIRDLADKDPRVVALVIRQWMS NEL >Mature_562_residues SASISATESRDNGLQAMWNRLRANPKIPLLIAASAAIAIVVALLLWAKSPDYRVLYSNINDRDGGAIVTQLTQMNIPFRF AENGAALLIPADKVHETRLRLAQLGLPKGGAVGFELLDQEKFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLAL PKPSLFVREQKSPSASVTLTLQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQSGRLLTQSDGAGRDLNAAQLKYAN EVESRYQRRIEAILAPMVGNGNARAQVTAQIDFATREQTDEEYQPNQLPNKAAVRSKQMSQSDQIGGPLVGGVPGALSNQ PSAPATAPIETAKPAATGNNANATQPNAAATRSAASGPQNSRLDETTNYEVDRTIRHTQQKAGTVQRLSVAVVVNYRGTD KDGKPLPMSKEQLAQIESLVRESMGFSSTRGDTLNVVNTPFTDNEVTGGELPFWQSQAFIDRLFDAGRYLLVLLVGWLLW RKLVRPQLQNRQAVQKAAIAAANTPMAKPAESNKQSNEELAQHRKSQQRVSAEVQSQRIRDLADKDPRVVALVIRQWMSN EL
Specific function: The M ring may be actively involved in energy transduction [H]
COG id: COG1766
COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fliF family [H]
Homologues:
Organism=Escherichia coli, GI1788248, Length=560, Percent_Identity=65.5357142857143, Blast_Score=706, Evalue=0.0,
Paralogues:
None
Copy number: 10-20 (rich media) [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013556 - InterPro: IPR000067 - InterPro: IPR006182 [H]
Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]
EC number: NA
Molecular weight: Translated: 61188; Mature: 61057
Theoretical pI: Translated: 9.87; Mature: 9.87
Prosite motif: PS00014 ER_TARGET
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASISATESRDNGLQAMWNRLRANPKIPLLIAASAAIAIVVALLLWAKSPDYRVLYSNI CCCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCEEEECCC NDRDGGAIVTQLTQMNIPFRFAENGAALLIPADKVHETRLRLAQLGLPKGGAVGFELLDQ CCCCCCHHEEHHHHCCCCEEECCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCHHHHCC EKFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCEEEE TLQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQSGRLLTQSDGAGRDLNAAQLKYA EECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHH NEVESRYQRRIEAILAPMVGNGNARAQVTAQIDFATREQTDEEYQPNQLPNKAAVRSKQM HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHH SQSDQIGGPLVGGVPGALSNQPSAPATAPIETAKPAATGNNANATQPNAAATRSAASGPQ HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC NSRLDETTNYEVDRTIRHTQQKAGTVQRLSVAVVVNYRGTDKDGKPLPMSKEQLAQIESL CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH VRESMGFSSTRGDTLNVVNTPFTDNEVTGGELPFWQSQAFIDRLFDAGRYLLVLLVGWLL HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH WRKLVRPQLQNRQAVQKAAIAAANTPMAKPAESNKQSNEELAQHRKSQQRVSAEVQSQRI HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RDLADKDPRVVALVIRQWMSNEL HHHHCCCCHHHHHHHHHHHCCCC >Mature Secondary Structure SASISATESRDNGLQAMWNRLRANPKIPLLIAASAAIAIVVALLLWAKSPDYRVLYSNI CCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHCCCCCCEEEECCC NDRDGGAIVTQLTQMNIPFRFAENGAALLIPADKVHETRLRLAQLGLPKGGAVGFELLDQ CCCCCCHHEEHHHHCCCCEEECCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCCHHHHCC EKFGISQFSEQINYQRALEGELSRTIESLGPVQNARVHLALPKPSLFVREQKSPSASVTL HHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEECCCCCCEEEE TLQPGRALDDGQINAIVYMVSSSVAGLPPGNVTVVDQSGRLLTQSDGAGRDLNAAQLKYA EECCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHH NEVESRYQRRIEAILAPMVGNGNARAQVTAQIDFATREQTDEEYQPNQLPNKAAVRSKQM HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEHHHHCCCCCCCCCCCCCHHHHHHHHH SQSDQIGGPLVGGVPGALSNQPSAPATAPIETAKPAATGNNANATQPNAAATRSAASGPQ HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC NSRLDETTNYEVDRTIRHTQQKAGTVQRLSVAVVVNYRGTDKDGKPLPMSKEQLAQIESL CCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHHHHHHHH VRESMGFSSTRGDTLNVVNTPFTDNEVTGGELPFWQSQAFIDRLFDAGRYLLVLLVGWLL HHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH WRKLVRPQLQNRQAVQKAAIAAANTPMAKPAESNKQSNEELAQHRKSQQRVSAEVQSQRI HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH RDLADKDPRVVALVIRQWMSNEL HHHHCCCCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2544561; 11677609; 1551848 [H]