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The map label for this gene is ybcM [H]

Identifier: 157371184

GI number: 157371184

Start: 3244127

End: 3244993

Strand: Direct

Name: ybcM [H]

Synonym: Spro_2944

Alternate gene names: 157371184

Gene position: 3244127-3244993 (Clockwise)

Preceding gene: 157371183

Following gene: 157371187

Centisome position: 59.54

GC content: 52.48

Gene sequence:

>867_bases
ATGGAACGTACAATTAATCTTTGTCCTGGAATTGGTGCCTCGGCGCATATTATTCAGCATACTGAATTATTATTCCCTTC
AGTCTATTTTGAACAACCCCATCTGTATTTGGTACAGCAAGGCCATAAACGCGTACGTTGGCAACAGCGTGAAGTGGTGG
CTCATAGCGGGGAATTGTTGATTATCGACGGAGGGCAAACCGTGGATATCATTAATGAGCCCTCAGAGGAAGGGGCATTC
AGCTGTCAGTTGTTGACCTGCGATCCGTTGCTGTTCGCCGCACCACTGGCCCAGGTTGAAACCCAGGCCCCAACGGCATT
CGACGCAGTGCTGGCATTGCGCAACCTGCCCTGCGCACTAATACACAGTTTTGAAACCACCAGCCTGGCGCTGGCACTTA
AACATCGTTTCCCTGCGGTCATCATTCGCCACAAAATGCTGGAGATTCTGCTGTGGCTGAAGCAATTCAATATCAGTTTC
ATTCATAACGAGGTCAGAAATTTAACCCAGCAGGTGCGCCGTTGTCTGGCGACCGATCCGCATAATATCTGGACGGCGGC
CGAGGTAGCGGACACCCTGTCGATGAGTGAAGTGATGCTGCGCCGTAAATTATCGGCAGAAAATACCTCGTTGCGTACCC
TGATGATCGACGTGCGCATGAGCAGCGCACTGGCACTGCTGCAATCCACCGATTGGCCCATCTCCGCCATCGCCCAGCAC
GTCGGTTATGAAAGTTCCTCAAGGTTTGCAGAACGTTTTCGCAAACGTTTTGGCTTTGCCCCCACCGCCATTCGCGGCCA
CCAACGGGCAATGGAGGGCAGCGCTATTCGCCCCGATCATTTCAGCATGATGGAGGCACAGGAATGA

Upstream 100 bases:

>100_bases
AAAACACGTCGTTGTGTTTCACAACGCATGGAAAAATGTTGCTCCAGCGCCGATCAAAGCGTAAAGATATTCCCAGATAC
TGGCTGCGAAATGAATATCG

Downstream 100 bases:

>100_bases
CAGCCACGGCCATAAGTTAAATCATTGAGCAACGGGAGCGTCGTTTATGCAGTGCGGGTTAGCGGAAAACAGCCGGGTGG
GATAGCATCGGCGAGCATTA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MERTINLCPGIGASAHIIQHTELLFPSVYFEQPHLYLVQQGHKRVRWQQREVVAHSGELLIIDGGQTVDIINEPSEEGAF
SCQLLTCDPLLFAAPLAQVETQAPTAFDAVLALRNLPCALIHSFETTSLALALKHRFPAVIIRHKMLEILLWLKQFNISF
IHNEVRNLTQQVRRCLATDPHNIWTAAEVADTLSMSEVMLRRKLSAENTSLRTLMIDVRMSSALALLQSTDWPISAIAQH
VGYESSSRFAERFRKRFGFAPTAIRGHQRAMEGSAIRPDHFSMMEAQE

Sequences:

>Translated_288_residues
MERTINLCPGIGASAHIIQHTELLFPSVYFEQPHLYLVQQGHKRVRWQQREVVAHSGELLIIDGGQTVDIINEPSEEGAF
SCQLLTCDPLLFAAPLAQVETQAPTAFDAVLALRNLPCALIHSFETTSLALALKHRFPAVIIRHKMLEILLWLKQFNISF
IHNEVRNLTQQVRRCLATDPHNIWTAAEVADTLSMSEVMLRRKLSAENTSLRTLMIDVRMSSALALLQSTDWPISAIAQH
VGYESSSRFAERFRKRFGFAPTAIRGHQRAMEGSAIRPDHFSMMEAQE
>Mature_288_residues
MERTINLCPGIGASAHIIQHTELLFPSVYFEQPHLYLVQQGHKRVRWQQREVVAHSGELLIIDGGQTVDIINEPSEEGAF
SCQLLTCDPLLFAAPLAQVETQAPTAFDAVLALRNLPCALIHSFETTSLALALKHRFPAVIIRHKMLEILLWLKQFNISF
IHNEVRNLTQQVRRCLATDPHNIWTAAEVADTLSMSEVMLRRKLSAENTSLRTLMIDVRMSSALALLQSTDWPISAIAQH
VGYESSSRFAERFRKRFGFAPTAIRGHQRAMEGSAIRPDHFSMMEAQE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786758, Length=242, Percent_Identity=28.099173553719, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787776, Length=218, Percent_Identity=26.605504587156, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1789932, Length=110, Percent_Identity=30, Blast_Score=67, Evalue=2e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32504; Mature: 32504

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MERTINLCPGIGASAHIIQHTELLFPSVYFEQPHLYLVQQGHKRVRWQQREVVAHSGELL
CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEE
IIDGGQTVDIINEPSEEGAFSCQLLTCDPLLFAAPLAQVETQAPTAFDAVLALRNLPCAL
EEECCCEEEEECCCCCCCCEEEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH
IHSFETTSLALALKHRFPAVIIRHKMLEILLWLKQFNISFIHNEVRNLTQQVRRCLATDP
HHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC
HNIWTAAEVADTLSMSEVMLRRKLSAENTSLRTLMIDVRMSSALALLQSTDWPISAIAQH
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHH
VGYESSSRFAERFRKRFGFAPTAIRGHQRAMEGSAIRPDHFSMMEAQE
HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCC
>Mature Secondary Structure
MERTINLCPGIGASAHIIQHTELLFPSVYFEQPHLYLVQQGHKRVRWQQREVVAHSGELL
CCCCCCCCCCCCCCHHHHHHHHHHCCHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCEE
IIDGGQTVDIINEPSEEGAFSCQLLTCDPLLFAAPLAQVETQAPTAFDAVLALRNLPCAL
EEECCCEEEEECCCCCCCCEEEEEEEECHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHH
IHSFETTSLALALKHRFPAVIIRHKMLEILLWLKQFNISFIHNEVRNLTQQVRRCLATDP
HHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCC
HNIWTAAEVADTLSMSEVMLRRKLSAENTSLRTLMIDVRMSSALALLQSTDWPISAIAQH
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHCCCCCHHHHHHH
VGYESSSRFAERFRKRFGFAPTAIRGHQRAMEGSAIRPDHFSMMEAQE
HCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]