Click here to switch to the map view.

The map label for this gene is yncD [H]

Identifier: 157371166

GI number: 157371166

Start: 3222226

End: 3224373

Strand: Reverse

Name: yncD [H]

Synonym: Spro_2926

Alternate gene names: 157371166

Gene position: 3224373-3222226 (Counterclockwise)

Preceding gene: 157371167

Following gene: 157371165

Centisome position: 59.18

GC content: 57.59

Gene sequence:

>2148_bases
ATGAAAAGCACTCATAAAAACCGGTTGGCAGTTTCAGCGCTGGTTATTCCAGCCCTACTGCCTGTTTCTGCCAGCTTTGC
GCAGGACAAGGATAGCGAACAGACCATGGTGGTCACGGCCAAACGCAGCGGTCTTTCTGAACTCTCAACCCCGGCTGCCG
TCAGCGTGGTCACGGGCGATCAAATCCGTGAGGCGAGGCCGCAGATCAATCTGTCGGAAAGCCTGGGCAGCGTGCCGGGT
CTGCAAATTCAGAACCGCCAGAACTATGCGCAGGATTTGCAGCTCTCGGTGCGTGGTTTCGGCGCGCGCTCAATGTATGG
CGTGCGCGGCGTGCGTATCTATGTCGATGGCATTCCGGCCACCATGCCGGATGGGCAGGGGCAGACCTCGAATATTGACC
TTAACTCGGTCGAGAAGGTGGAAGTGTTACGCGGCCCGTTTTCCGCGCTCTACGGTAACGCCTCCGGCGGCATGGTGAAT
GTGGAAACCGAAACCGGCCAACAGCCACCCCGCATTGAGGCCGGTTCGTACTTCGGCAGCTACGGCACCTGGCGTTATGG
CGTCAAGGCCACCGGGGCGACCGGTGACGGTACCCACGCCGGTGATGTCAACTACACCATTTCCGGTACCCGTTTTACCA
CTCAGGGGTTCCGTGACCACAGTGGCGCACGGAAAAATCTTGGTAATGCCAAGCTCGGTGTTCGCATCGACGATGTCAGT
ACGCTCACGCTGCTGTTCAACAGTGTAGATATCAACGCCAACGATCCGGGCGGCCTGACGAATGCCGAATGGCACGATAA
TCCGCGCCAGGCACCGCGAGCCGATCAGTACAATACGCGCAAAACCACTTCACAAACTCAGGCCGGGTTGCACTACCAGC
GTGAGATGGGAGTTGATGACGATCTCAGCATCATGATGTATGCCGGTGAGCGTGAAACCACTCAGTACCAGTCGATCCCG
GTCGCGGTACAGCAGCGCAGTGCGCAGCATCCGGGCGGGGTGATTGATCTGACGCGCCATTATCAGGGGATTGATACCCG
CTGGACGCACCGTGGCGAGCTGGGCGTGCCATATACCCTGACCGGCGGGCTGGATTATGAAACCATGACCGAGCAGCGTA
AAGGGTATGAAAACTTTACTCAGGTCAACGGCGTCACCGAGCTTGGCACCGAGGGAGCGCTGCGCCGTAACGAACGCAAC
CTGATGTGGAATGTGGATCCTTACCTGCAAACCTCATGGCAGTTGACGCAACAACTGACGCTGGATGTTGGTATGCGTTA
CAGCACCGTCAATTTCGACTCTAACGATCACTACGTTACCGGTGCCAATGGCGATGACAGCGGCAGCGCCAGTTATCATC
AGTGGCTGCCTGCCGGATCCCTCAACTATGCGGTGATGAGCGGTTGGAACCTGTATCTTTCTGCCGGCCGCGGTTTTGAG
ACGCCGACAATTAACGAACTGTCTTACCGTTCAGGCGATCAGGCCGGGTTGAACTTCGGCCTGAATCCCTCGACCAGCGA
CACGGTGGAGTTGGGCAGTAAAACCCGCATTGGCAATGGCCTGCTGACCGCCGCCGTTTTCCAGACTGACACCCGCAACG
AAATCGTGGTGGATGAAAGCAGCAACGGGCGCACCAGCTACAAAAACGCCGGGCAGACCCGCAGGCGTGGTCTGGAGCTG
GCGCTGGATCAGCAATTCGCTTATGACTGGCGGGTACAGCTGGCCTGGACGCTGCTGGATGCACGCTATCGCGATGATGT
GTGCGGCGACAGCCAGTGTTCGGCGACCAACATGGTGCCCAGTGGCAACCGCATGCCGGGCATTGCGCGCAATATGGGCT
ATGCCTCGCTTGCCTGGTCACCGCCGGAAGGTTGGTATGCCGGCGCAGAGGTGCGCTATATGAGTGATATTGAAGTTAAC
GATGCCAACACGGAGCAGGCCCCGGCTTATACCACCGTTGGTTTGAATACCGGTTACCGCTATCCGCTGGGTAATTGGAT
GCTTAACGTTTTCGGCCGGGTAGATAATCTGTTTGACCGACAATATGTAGGGTCGGTGATCGTTAATGAAGGTAATGGCC
GTTACTACGAACCGGCACCGGGCAGAAACTGGGGCGGCGGATTGAGCGTCTCTTATACCTTCGAGTAA

Upstream 100 bases:

>100_bases
TTAGGCTAACTATTTTCATTTTTTGTTAAAAGCATTAACATGCTGGCCATAACGTTCCAAATGGTTCATACCCTTCGATC
CCTTTAACGGCATTTTCCTG

Downstream 100 bases:

>100_bases
CTTCAGGACTTGCCTGTCGGCGTAATCATTCAGCATCAGGGCGGGAGCTTTCCCGCCTTTTTTATTTATAAATTTCGGCG
GATTGACAGGTTCTGAGTTG

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 715; Mature: 715

Protein sequence:

>715_residues
MKSTHKNRLAVSALVIPALLPVSASFAQDKDSEQTMVVTAKRSGLSELSTPAAVSVVTGDQIREARPQINLSESLGSVPG
LQIQNRQNYAQDLQLSVRGFGARSMYGVRGVRIYVDGIPATMPDGQGQTSNIDLNSVEKVEVLRGPFSALYGNASGGMVN
VETETGQQPPRIEAGSYFGSYGTWRYGVKATGATGDGTHAGDVNYTISGTRFTTQGFRDHSGARKNLGNAKLGVRIDDVS
TLTLLFNSVDINANDPGGLTNAEWHDNPRQAPRADQYNTRKTTSQTQAGLHYQREMGVDDDLSIMMYAGERETTQYQSIP
VAVQQRSAQHPGGVIDLTRHYQGIDTRWTHRGELGVPYTLTGGLDYETMTEQRKGYENFTQVNGVTELGTEGALRRNERN
LMWNVDPYLQTSWQLTQQLTLDVGMRYSTVNFDSNDHYVTGANGDDSGSASYHQWLPAGSLNYAVMSGWNLYLSAGRGFE
TPTINELSYRSGDQAGLNFGLNPSTSDTVELGSKTRIGNGLLTAAVFQTDTRNEIVVDESSNGRTSYKNAGQTRRRGLEL
ALDQQFAYDWRVQLAWTLLDARYRDDVCGDSQCSATNMVPSGNRMPGIARNMGYASLAWSPPEGWYAGAEVRYMSDIEVN
DANTEQAPAYTTVGLNTGYRYPLGNWMLNVFGRVDNLFDRQYVGSVIVNEGNGRYYEPAPGRNWGGGLSVSYTFE

Sequences:

>Translated_715_residues
MKSTHKNRLAVSALVIPALLPVSASFAQDKDSEQTMVVTAKRSGLSELSTPAAVSVVTGDQIREARPQINLSESLGSVPG
LQIQNRQNYAQDLQLSVRGFGARSMYGVRGVRIYVDGIPATMPDGQGQTSNIDLNSVEKVEVLRGPFSALYGNASGGMVN
VETETGQQPPRIEAGSYFGSYGTWRYGVKATGATGDGTHAGDVNYTISGTRFTTQGFRDHSGARKNLGNAKLGVRIDDVS
TLTLLFNSVDINANDPGGLTNAEWHDNPRQAPRADQYNTRKTTSQTQAGLHYQREMGVDDDLSIMMYAGERETTQYQSIP
VAVQQRSAQHPGGVIDLTRHYQGIDTRWTHRGELGVPYTLTGGLDYETMTEQRKGYENFTQVNGVTELGTEGALRRNERN
LMWNVDPYLQTSWQLTQQLTLDVGMRYSTVNFDSNDHYVTGANGDDSGSASYHQWLPAGSLNYAVMSGWNLYLSAGRGFE
TPTINELSYRSGDQAGLNFGLNPSTSDTVELGSKTRIGNGLLTAAVFQTDTRNEIVVDESSNGRTSYKNAGQTRRRGLEL
ALDQQFAYDWRVQLAWTLLDARYRDDVCGDSQCSATNMVPSGNRMPGIARNMGYASLAWSPPEGWYAGAEVRYMSDIEVN
DANTEQAPAYTTVGLNTGYRYPLGNWMLNVFGRVDNLFDRQYVGSVIVNEGNGRYYEPAPGRNWGGGLSVSYTFE
>Mature_715_residues
MKSTHKNRLAVSALVIPALLPVSASFAQDKDSEQTMVVTAKRSGLSELSTPAAVSVVTGDQIREARPQINLSESLGSVPG
LQIQNRQNYAQDLQLSVRGFGARSMYGVRGVRIYVDGIPATMPDGQGQTSNIDLNSVEKVEVLRGPFSALYGNASGGMVN
VETETGQQPPRIEAGSYFGSYGTWRYGVKATGATGDGTHAGDVNYTISGTRFTTQGFRDHSGARKNLGNAKLGVRIDDVS
TLTLLFNSVDINANDPGGLTNAEWHDNPRQAPRADQYNTRKTTSQTQAGLHYQREMGVDDDLSIMMYAGERETTQYQSIP
VAVQQRSAQHPGGVIDLTRHYQGIDTRWTHRGELGVPYTLTGGLDYETMTEQRKGYENFTQVNGVTELGTEGALRRNERN
LMWNVDPYLQTSWQLTQQLTLDVGMRYSTVNFDSNDHYVTGANGDDSGSASYHQWLPAGSLNYAVMSGWNLYLSAGRGFE
TPTINELSYRSGDQAGLNFGLNPSTSDTVELGSKTRIGNGLLTAAVFQTDTRNEIVVDESSNGRTSYKNAGQTRRRGLEL
ALDQQFAYDWRVQLAWTLLDARYRDDVCGDSQCSATNMVPSGNRMPGIARNMGYASLAWSPPEGWYAGAEVRYMSDIEVN
DANTEQAPAYTTVGLNTGYRYPLGNWMLNVFGRVDNLFDRQYVGSVIVNEGNGRYYEPAPGRNWGGGLSVSYTFE

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=708, Percent_Identity=68.7853107344633, Blast_Score=1013, Evalue=0.0,
Organism=Escherichia coli, GI1788478, Length=163, Percent_Identity=34.9693251533742, Blast_Score=72, Evalue=2e-13,
Organism=Escherichia coli, GI1786798, Length=164, Percent_Identity=29.8780487804878, Blast_Score=63, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 78409; Mature: 78409

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKSTHKNRLAVSALVIPALLPVSASFAQDKDSEQTMVVTAKRSGLSELSTPAAVSVVTGD
CCCCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEEECCCCCHHCCCCCEEEEEECH
QIREARPQINLSESLGSVPGLQIQNRQNYAQDLQLSVRGFGARSMYGVRGVRIYVDGIPA
HHHHHCCCCEEHHHHCCCCCEEEECCCCHHHHHEEEEECCCCCCCCCCCEEEEEECCCCC
TMPDGQGQTSNIDLNSVEKVEVLRGPFSALYGNASGGMVNVETETGQQPPRIEAGSYFGS
CCCCCCCCCCCCCCCCCHHHHHHHCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
YGTWRYGVKATGATGDGTHAGDVNYTISGTRFTTQGFRDHSGARKNLGNAKLGVRIDDVS
CCCEEECEEEECCCCCCCCCCCEEEEEECCEEEECCCCCCCCCHHCCCCCEEEEEECCCE
TLTLLFNSVDINANDPGGLTNAEWHDNPRQAPRADQYNTRKTTSQTQAGLHYQREMGVDD
EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEHHHCCCCC
DLSIMMYAGERETTQYQSIPVAVQQRSAQHPGGVIDLTRHYQGIDTRWTHRGELGVPYTL
CCEEEEEECCCCCCHHHCCCHHHHHCCCCCCCCEEEEHHHCCCCCCCEECCCCCCCCEEE
TGGLDYETMTEQRKGYENFTQVNGVTELGTEGALRRNERNLMWNVDPYLQTSWQLTQQLT
ECCCCHHHHHHHHCCCHHHHHHCCCHHCCCCCCCEECCCCEEEECCHHHHCHHHHHHHEE
LDVGMRYSTVNFDSNDHYVTGANGDDSGSASYHQWLPAGSLNYAVMSGWNLYLSAGRGFE
EECCCEEEEEEECCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEEEECCEEEEECCCCCC
TPTINELSYRSGDQAGLNFGLNPSTSDTVELGSKTRIGNGLLTAAVFQTDTRNEIVVDES
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEECCCCEEEEEEEECCCCCEEEEECC
SNGRTSYKNAGQTRRRGLELALDQQFAYDWRVQLAWTLLDARYRDDVCGDSQCSATNMVP
CCCCCCHHCCCHHHHCCCEEEECCCCCEEEEEEEEEEEHHHHHCCCCCCCCCCCCCCCCC
SGNRMPGIARNMGYASLAWSPPEGWYAGAEVRYMSDIEVNDANTEQAPAYTTVGLNTGYR
CCCCCCCHHHCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCC
YPLGNWMLNVFGRVDNLFDRQYVGSVIVNEGNGRYYEPAPGRNWGGGLSVSYTFE
CCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEECCCCCCCCCCCEEEEEEEC
>Mature Secondary Structure
MKSTHKNRLAVSALVIPALLPVSASFAQDKDSEQTMVVTAKRSGLSELSTPAAVSVVTGD
CCCCCCCHHHHHHHHHHHHHCCCCHHCCCCCCCCEEEEEECCCCCHHCCCCCEEEEEECH
QIREARPQINLSESLGSVPGLQIQNRQNYAQDLQLSVRGFGARSMYGVRGVRIYVDGIPA
HHHHHCCCCEEHHHHCCCCCEEEECCCCHHHHHEEEEECCCCCCCCCCCEEEEEECCCCC
TMPDGQGQTSNIDLNSVEKVEVLRGPFSALYGNASGGMVNVETETGQQPPRIEAGSYFGS
CCCCCCCCCCCCCCCCCHHHHHHHCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
YGTWRYGVKATGATGDGTHAGDVNYTISGTRFTTQGFRDHSGARKNLGNAKLGVRIDDVS
CCCEEECEEEECCCCCCCCCCCEEEEEECCEEEECCCCCCCCCHHCCCCCEEEEEECCCE
TLTLLFNSVDINANDPGGLTNAEWHDNPRQAPRADQYNTRKTTSQTQAGLHYQREMGVDD
EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCEEHHHCCCCC
DLSIMMYAGERETTQYQSIPVAVQQRSAQHPGGVIDLTRHYQGIDTRWTHRGELGVPYTL
CCEEEEEECCCCCCHHHCCCHHHHHCCCCCCCCEEEEHHHCCCCCCCEECCCCCCCCEEE
TGGLDYETMTEQRKGYENFTQVNGVTELGTEGALRRNERNLMWNVDPYLQTSWQLTQQLT
ECCCCHHHHHHHHCCCHHHHHHCCCHHCCCCCCCEECCCCEEEECCHHHHCHHHHHHHEE
LDVGMRYSTVNFDSNDHYVTGANGDDSGSASYHQWLPAGSLNYAVMSGWNLYLSAGRGFE
EECCCEEEEEEECCCCCEEECCCCCCCCCCCHHHCCCCCCCCEEEEECCEEEEECCCCCC
TPTINELSYRSGDQAGLNFGLNPSTSDTVELGSKTRIGNGLLTAAVFQTDTRNEIVVDES
CCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCEECCCCEEEEEEEECCCCCEEEEECC
SNGRTSYKNAGQTRRRGLELALDQQFAYDWRVQLAWTLLDARYRDDVCGDSQCSATNMVP
CCCCCCHHCCCHHHHCCCEEEECCCCCEEEEEEEEEEEHHHHHCCCCCCCCCCCCCCCCC
SGNRMPGIARNMGYASLAWSPPEGWYAGAEVRYMSDIEVNDANTEQAPAYTTVGLNTGYR
CCCCCCCHHHCCCCEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCEEEEECCCCCC
YPLGNWMLNVFGRVDNLFDRQYVGSVIVNEGNGRYYEPAPGRNWGGGLSVSYTFE
CCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEECCCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]