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The map label for this gene is ycdB [H]

Identifier: 157371167

GI number: 157371167

Start: 3224586

End: 3225878

Strand: Reverse

Name: ycdB [H]

Synonym: Spro_2927

Alternate gene names: 157371167

Gene position: 3225878-3224586 (Counterclockwise)

Preceding gene: 157371168

Following gene: 157371166

Centisome position: 59.2

GC content: 59.47

Gene sequence:

>1293_bases
ATGAGTAACAAGATCGGCCCGGGAAACGGGCCGCATCCACAGGGCGCGGCGTCACCGTCGCGCCGTCGTTTGTTGCAGGG
GTTGGGGCTGGGCGTGCTGGCGCTGGGCGGCAGCCGTCTGACCCAGGCGGCGGATAAAACCGCCGATCCGCTGGCGGTAC
CGCAGGACGAACGTTGGCAGAAGCAGCCGTTCTATGGCGTGCATCAGGCCGGGATCCTCACGCCGCAGCAGGCCGCGATG
ATGCTGGTCGCGTTCGACGTGCTGGCGAGTAACAAGCAGGATTTAGAGCGTTTGTTCCGGTTGCTGACCACCCGTATTGC
CTTCCTGACTACCGGCGGCAGGGCACCGGAGGTGGATCCCAAACTGCCACCGCTCGATTCGGGTATCATGGGGCCGGAGA
TTTATCCGGATAACCTGACGATCACCGTGTCGGTCGGTACCTCGTTATTTGACGAACGTTTTGGTCTGCAGGCGCAAAAA
CCGCTGCGGCTGCAGAAAATGACGCGCTTCCCGAACGACTCGCTGGACGCCAGCCTGTGCCACGGGGATTTGGTGCTGCA
GATTTGCGCCAATACCAATGAAACGGTGATCCACGCGCTGCGCGACATTATCAAGCATTCGCCGGATCTGCTCAGCGTGC
GCTGGAAGCGGGAAGGGTTTATTTCTGCCCACGCCGCGCGTAGCAAAGGCAAGGAAACACCGATCAACCTGCTGGGCTTT
AAGGATGGCACTGCCAACCCGAAAACCAGCGACAAACCCTTGATGGATCAGGTGGTGTGGACAGCAGACAACGCCGGGGA
ACCGGCATGGGCGGTGGGTGGCAGCTATCAGGCCGCGCGTATTATCCGTTTCCATGTGGAATTCTGGGATCGCACGCCGT
TGCAGGAGCAGCAAACCATCTTTGGTCGCGACAAGCACAGCGGTGCGCCACTCGGCATGAAGCATGAGCACGATGAGCCG
GACTATGCGCAAGATCCCGAGGGCAAAATGATCCCGATGGACGCGCATATTCGCCTGGCCAACCCGCGCACGCCGCAAAC
CCAGAGCAACTTACTGCTGCGCCGTGGTTACAGCTATTCAATTGGCGTGTCCAACTCCGGCCAGTTGGAGATGGGGTTGC
TGTTTGTTTGTTATCAGGCCGATCTGGAAAAAGGCTTCCTGACGGTGCAAAAACGCCTGAACGGCGAAGCGCTGGAAGAG
TATGTCAAACCGATCGGCGGCGGCTATTTCTTTGCGCTGCCGGGGGTAAAAGACGCCAATGATTACCTGGGCAGCGGCCT
GTTGAAAGCATAA

Upstream 100 bases:

>100_bases
ACTGATGCCGATCGCAATGCCATGAAAGGGCCAATCACCACTCTGGCGGAAGACCTTTCACAACTGCGTGGCGTTCTGGG
TCTGGATTGAGGCAAGCATA

Downstream 100 bases:

>100_bases
CTCACCTCTTACAAGGCGGGGGATCCCCGCCTGAATTTTGCAGCCATTCACGACGAACCGCCGTTAATTAAAATCAATAG
TGACCTTGCGCAATTGGGGG

Product: Dyp-type peroxidase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MSNKIGPGNGPHPQGAASPSRRRLLQGLGLGVLALGGSRLTQAADKTADPLAVPQDERWQKQPFYGVHQAGILTPQQAAM
MLVAFDVLASNKQDLERLFRLLTTRIAFLTTGGRAPEVDPKLPPLDSGIMGPEIYPDNLTITVSVGTSLFDERFGLQAQK
PLRLQKMTRFPNDSLDASLCHGDLVLQICANTNETVIHALRDIIKHSPDLLSVRWKREGFISAHAARSKGKETPINLLGF
KDGTANPKTSDKPLMDQVVWTADNAGEPAWAVGGSYQAARIIRFHVEFWDRTPLQEQQTIFGRDKHSGAPLGMKHEHDEP
DYAQDPEGKMIPMDAHIRLANPRTPQTQSNLLLRRGYSYSIGVSNSGQLEMGLLFVCYQADLEKGFLTVQKRLNGEALEE
YVKPIGGGYFFALPGVKDANDYLGSGLLKA

Sequences:

>Translated_430_residues
MSNKIGPGNGPHPQGAASPSRRRLLQGLGLGVLALGGSRLTQAADKTADPLAVPQDERWQKQPFYGVHQAGILTPQQAAM
MLVAFDVLASNKQDLERLFRLLTTRIAFLTTGGRAPEVDPKLPPLDSGIMGPEIYPDNLTITVSVGTSLFDERFGLQAQK
PLRLQKMTRFPNDSLDASLCHGDLVLQICANTNETVIHALRDIIKHSPDLLSVRWKREGFISAHAARSKGKETPINLLGF
KDGTANPKTSDKPLMDQVVWTADNAGEPAWAVGGSYQAARIIRFHVEFWDRTPLQEQQTIFGRDKHSGAPLGMKHEHDEP
DYAQDPEGKMIPMDAHIRLANPRTPQTQSNLLLRRGYSYSIGVSNSGQLEMGLLFVCYQADLEKGFLTVQKRLNGEALEE
YVKPIGGGYFFALPGVKDANDYLGSGLLKA
>Mature_429_residues
SNKIGPGNGPHPQGAASPSRRRLLQGLGLGVLALGGSRLTQAADKTADPLAVPQDERWQKQPFYGVHQAGILTPQQAAMM
LVAFDVLASNKQDLERLFRLLTTRIAFLTTGGRAPEVDPKLPPLDSGIMGPEIYPDNLTITVSVGTSLFDERFGLQAQKP
LRLQKMTRFPNDSLDASLCHGDLVLQICANTNETVIHALRDIIKHSPDLLSVRWKREGFISAHAARSKGKETPINLLGFK
DGTANPKTSDKPLMDQVVWTADNAGEPAWAVGGSYQAARIIRFHVEFWDRTPLQEQQTIFGRDKHSGAPLGMKHEHDEPD
YAQDPEGKMIPMDAHIRLANPRTPQTQSNLLLRRGYSYSIGVSNSGQLEMGLLFVCYQADLEKGFLTVQKRLNGEALEEY
VKPIGGGYFFALPGVKDANDYLGSGLLKA

Specific function: May have a role as a peroxidase [H]

COG id: COG2837

COG function: function code P; Predicted iron-dependent peroxidase

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DyP-type peroxidase family [H]

Homologues:

Organism=Escherichia coli, GI1787255, Length=418, Percent_Identity=76.0765550239234, Blast_Score=650, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR006314
- InterPro:   IPR006313
- InterPro:   IPR006311 [H]

Pfam domain/function: PF04261 Dyp_perox [H]

EC number: NA

Molecular weight: Translated: 47166; Mature: 47035

Theoretical pI: Translated: 8.11; Mature: 8.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNKIGPGNGPHPQGAASPSRRRLLQGLGLGVLALGGSRLTQAADKTADPLAVPQDERWQ
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCC
KQPFYGVHQAGILTPQQAAMMLVAFDVLASNKQDLERLFRLLTTRIAFLTTGGRAPEVDP
CCCCCCCHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCCCCC
KLPPLDSGIMGPEIYPDNLTITVSVGTSLFDERFGLQAQKPLRLQKMTRFPNDSLDASLC
CCCCCCCCCCCCEECCCCEEEEEECCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHH
HGDLVLQICANTNETVIHALRDIIKHSPDLLSVRWKREGFISAHAARSKGKETPINLLGF
CCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCEEEEEE
KDGTANPKTSDKPLMDQVVWTADNAGEPAWAVGGSYQAARIIRFHVEFWDRTPLQEQQTI
CCCCCCCCCCCCCHHHHHEEECCCCCCCCEEECCCCHHEEEEEEEEEHHCCCCCCHHHHH
FGRDKHSGAPLGMKHEHDEPDYAQDPEGKMIPMDAHIRLANPRTPQTQSNLLLRRGYSYS
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCHHHHHHEECCCEEE
IGVSNSGQLEMGLLFVCYQADLEKGFLTVQKRLNGEALEEYVKPIGGGYFFALPGVKDAN
ECCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCH
DYLGSGLLKA
HHHCCCCCCC
>Mature Secondary Structure 
SNKIGPGNGPHPQGAASPSRRRLLQGLGLGVLALGGSRLTQAADKTADPLAVPQDERWQ
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHCCCCCCCCCCCCCCC
KQPFYGVHQAGILTPQQAAMMLVAFDVLASNKQDLERLFRLLTTRIAFLTTGGRAPEVDP
CCCCCCCHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCCCCC
KLPPLDSGIMGPEIYPDNLTITVSVGTSLFDERFGLQAQKPLRLQKMTRFPNDSLDASLC
CCCCCCCCCCCCEECCCCEEEEEECCCHHHHHHCCCCCCCCHHHHHHHCCCCCCCCHHHH
HGDLVLQICANTNETVIHALRDIIKHSPDLLSVRWKREGFISAHAARSKGKETPINLLGF
CCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCEEEEEE
KDGTANPKTSDKPLMDQVVWTADNAGEPAWAVGGSYQAARIIRFHVEFWDRTPLQEQQTI
CCCCCCCCCCCCCHHHHHEEECCCCCCCCEEECCCCHHEEEEEEEEEHHCCCCCCHHHHH
FGRDKHSGAPLGMKHEHDEPDYAQDPEGKMIPMDAHIRLANPRTPQTQSNLLLRRGYSYS
HCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCEEEECCCCCCCHHHHHHEECCCEEE
IGVSNSGQLEMGLLFVCYQADLEKGFLTVQKRLNGEALEEYVKPIGGGYFFALPGVKDAN
ECCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCCCCCH
DYLGSGLLKA
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]