| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
Click here to switch to the map view.
The map label for this gene is dppD [H]
Identifier: 157371153
GI number: 157371153
Start: 3206370
End: 3207206
Strand: Reverse
Name: dppD [H]
Synonym: Spro_2913
Alternate gene names: 157371153
Gene position: 3207206-3206370 (Counterclockwise)
Preceding gene: 157371154
Following gene: 157371152
Centisome position: 58.86
GC content: 60.33
Gene sequence:
>837_bases ATGGGCACTGATAACAATTTATTGACCGTTGAACGGCTATCGGTAGCGCTGCCGGGCGCGCAGCCGCTGGTCAAAGGCAT TTCTTTCAGCATGGGACAGGAGCGGCTGGCGCTGGTCGGTGAGTCCGGTTCCGGCAAATCCCTGACTGCGCGGGCCTTGA TGGGGCTGCTGCCACCGCCGTTACAGCTACAGGCGCAGCGTTTAACCTTGGGCGGGGACGATCTGGCACGCCTGAGCGAG CGTCAGTGGAACCGTCTGCGCGGCAACAAAGTGGCGATGGTGATGCAGGATCCCAAGCATGCGCTGAACCCGACCCAGCC GATTGGCCGTCAGGTGGAGGAGCCGTTGCTGCTGCATACCCGCCTGGGCCGCGCCGAACGGCGAGAGAAGGTGCTGGATA TGCTGGCGGCGGTTGGCTTGCCCGACCCTGCCGCGCTGCGTCAACGCTACCCGCACCAGCTGTCTGGCGGCATGGGACAA CGGGTGATGCTGGCAATCGCGTTGATTAACGATCCGCAATTACTGATTGCCGACGAACCCACGTCCGCTTTGGATCACCA GATGCGCGATCAGGTATTGCAACTGATTGAGAACCTGGTGGAGCAGCGCAATATGGGCCTGATTTTGATCAGCCACGATT TACAACAGGTGGCGCACTACTGCGAACGGGTGTTGGTGATGTACAAAGGCGAACTGCTGGATCAGTTACCCGCCGATCGT CTGGCCTCGGCCACTCACCCCTATACCCGCACGCTGTGGTCGTGTCGGCCAAGTAAGGAAACCCATGGCAAATCCTTGCC GGTGTTGGATCGCGCGTTGCTGGAGTCGCTGAAATGA
Upstream 100 bases:
>100_bases CAATGGTGGGTCGCCGCGGTACCGGGTGGGGCGATCCTGTTTGCCAGCCTGGCCTTTAACCTGTTGGGCGACGGCCTGCG CGATAAAATGGATCCTCGTC
Downstream 100 bases:
>100_bases GCCTGATTACACTGGATAACCTCAGCGTCAGCCATCGTCAGGGCTACGAAATACGTACCGTGGTGCATGAGGTCAACCTG CATATCGAAGCGGGCGAATG
Product: ABC transporter-like protein
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 278; Mature: 277
Protein sequence:
>278_residues MGTDNNLLTVERLSVALPGAQPLVKGISFSMGQERLALVGESGSGKSLTARALMGLLPPPLQLQAQRLTLGGDDLARLSE RQWNRLRGNKVAMVMQDPKHALNPTQPIGRQVEEPLLLHTRLGRAERREKVLDMLAAVGLPDPAALRQRYPHQLSGGMGQ RVMLAIALINDPQLLIADEPTSALDHQMRDQVLQLIENLVEQRNMGLILISHDLQQVAHYCERVLVMYKGELLDQLPADR LASATHPYTRTLWSCRPSKETHGKSLPVLDRALLESLK
Sequences:
>Translated_278_residues MGTDNNLLTVERLSVALPGAQPLVKGISFSMGQERLALVGESGSGKSLTARALMGLLPPPLQLQAQRLTLGGDDLARLSE RQWNRLRGNKVAMVMQDPKHALNPTQPIGRQVEEPLLLHTRLGRAERREKVLDMLAAVGLPDPAALRQRYPHQLSGGMGQ RVMLAIALINDPQLLIADEPTSALDHQMRDQVLQLIENLVEQRNMGLILISHDLQQVAHYCERVLVMYKGELLDQLPADR LASATHPYTRTLWSCRPSKETHGKSLPVLDRALLESLK >Mature_277_residues GTDNNLLTVERLSVALPGAQPLVKGISFSMGQERLALVGESGSGKSLTARALMGLLPPPLQLQAQRLTLGGDDLARLSER QWNRLRGNKVAMVMQDPKHALNPTQPIGRQVEEPLLLHTRLGRAERREKVLDMLAAVGLPDPAALRQRYPHQLSGGMGQR VMLAIALINDPQLLIADEPTSALDHQMRDQVLQLIENLVEQRNMGLILISHDLQQVAHYCERVLVMYKGELLDQLPADRL ASATHPYTRTLWSCRPSKETHGKSLPVLDRALLESLK
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system. Expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI116734710, Length=201, Percent_Identity=29.3532338308458, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI42490749, Length=252, Percent_Identity=27.7777777777778, Blast_Score=69, Evalue=5e-12, Organism=Escherichia coli, GI1789963, Length=256, Percent_Identity=43.75, Blast_Score=207, Evalue=6e-55, Organism=Escherichia coli, GI48994883, Length=265, Percent_Identity=40.7547169811321, Blast_Score=187, Evalue=5e-49, Organism=Escherichia coli, GI1788506, Length=259, Percent_Identity=42.8571428571429, Blast_Score=184, Evalue=5e-48, Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=43.1818181818182, Blast_Score=183, Evalue=1e-47, Organism=Escherichia coli, GI1787759, Length=269, Percent_Identity=38.6617100371747, Blast_Score=179, Evalue=2e-46, Organism=Escherichia coli, GI1789962, Length=253, Percent_Identity=39.9209486166008, Blast_Score=161, Evalue=4e-41, Organism=Escherichia coli, GI1787548, Length=257, Percent_Identity=34.6303501945525, Blast_Score=160, Evalue=7e-41, Organism=Escherichia coli, GI1787500, Length=238, Percent_Identity=40.3361344537815, Blast_Score=155, Evalue=3e-39, Organism=Escherichia coli, GI1789890, Length=247, Percent_Identity=37.246963562753, Blast_Score=146, Evalue=1e-36, Organism=Escherichia coli, GI1787758, Length=255, Percent_Identity=35.6862745098039, Blast_Score=130, Evalue=9e-32, Organism=Escherichia coli, GI1787547, Length=235, Percent_Identity=35.3191489361702, Blast_Score=125, Evalue=2e-30, Organism=Escherichia coli, GI1789891, Length=228, Percent_Identity=35.5263157894737, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI1789032, Length=232, Percent_Identity=34.9137931034483, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI87081834, Length=215, Percent_Identity=36.7441860465116, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1789873, Length=227, Percent_Identity=32.15859030837, Blast_Score=99, Evalue=4e-22, Organism=Escherichia coli, GI1787105, Length=255, Percent_Identity=32.156862745098, Blast_Score=96, Evalue=4e-21, Organism=Escherichia coli, GI1786398, Length=213, Percent_Identity=31.924882629108, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786703, Length=202, Percent_Identity=37.1287128712871, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI48994997, Length=231, Percent_Identity=30.7359307359307, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI87081791, Length=245, Percent_Identity=31.0204081632653, Blast_Score=87, Evalue=1e-18, Organism=Escherichia coli, GI1788761, Length=200, Percent_Identity=34, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1786872, Length=209, Percent_Identity=33.0143540669856, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=30.3418803418803, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1788450, Length=239, Percent_Identity=28.0334728033473, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1789672, Length=244, Percent_Identity=29.0983606557377, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1787370, Length=200, Percent_Identity=31.5, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1788225, Length=224, Percent_Identity=30.8035714285714, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI1787712, Length=210, Percent_Identity=30.952380952381, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786345, Length=240, Percent_Identity=30.8333333333333, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1787089, Length=247, Percent_Identity=31.9838056680162, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=30.316742081448, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1788644, Length=114, Percent_Identity=34.2105263157895, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1790162, Length=224, Percent_Identity=28.5714285714286, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI48994943, Length=232, Percent_Identity=29.7413793103448, Blast_Score=73, Evalue=3e-14, Organism=Escherichia coli, GI1789991, Length=243, Percent_Identity=27.9835390946502, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1786319, Length=274, Percent_Identity=24.8175182481752, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1786563, Length=227, Percent_Identity=29.9559471365639, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1786253, Length=221, Percent_Identity=29.8642533936652, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1787164, Length=204, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787792, Length=209, Percent_Identity=30.1435406698565, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI48995001, Length=241, Percent_Identity=29.045643153527, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87081782, Length=210, Percent_Identity=29.5238095238095, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1790739, Length=234, Percent_Identity=29.4871794871795, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786698, Length=220, Percent_Identity=26.3636363636364, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1786654, Length=250, Percent_Identity=28.8, Blast_Score=65, Evalue=6e-12, Organism=Escherichia coli, GI1788165, Length=224, Percent_Identity=29.4642857142857, Blast_Score=64, Evalue=1e-11, Organism=Escherichia coli, GI87082267, Length=226, Percent_Identity=27.4336283185841, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1790190, Length=221, Percent_Identity=26.6968325791855, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1786803, Length=212, Percent_Identity=25.9433962264151, Blast_Score=62, Evalue=6e-11, Organism=Caenorhabditis elegans, GI25146777, Length=258, Percent_Identity=29.4573643410853, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI193211017, Length=262, Percent_Identity=27.8625954198473, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI193211015, Length=262, Percent_Identity=27.8625954198473, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71996809, Length=262, Percent_Identity=27.8625954198473, Blast_Score=78, Evalue=5e-15, Organism=Caenorhabditis elegans, GI193208177, Length=287, Percent_Identity=26.4808362369338, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI212646699, Length=231, Percent_Identity=28.1385281385281, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193209708, Length=233, Percent_Identity=29.1845493562232, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17558664, Length=244, Percent_Identity=29.0983606557377, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17541710, Length=244, Percent_Identity=27.8688524590164, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17567269, Length=208, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI115533592, Length=219, Percent_Identity=29.2237442922374, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324498, Length=182, Percent_Identity=30.2197802197802, Blast_Score=63, Evalue=5e-11, Organism=Drosophila melanogaster, GI17647219, Length=158, Percent_Identity=32.9113924050633, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI45552805, Length=100, Percent_Identity=41, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI24643674, Length=215, Percent_Identity=24.6511627906977, Blast_Score=68, Evalue=6e-12, Organism=Drosophila melanogaster, GI28574744, Length=173, Percent_Identity=29.4797687861272, Blast_Score=68, Evalue=9e-12, Organism=Drosophila melanogaster, GI24641565, Length=250, Percent_Identity=30.4, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI23397593, Length=213, Percent_Identity=30.5164319248826, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI85726357, Length=216, Percent_Identity=30.5555555555556, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 30798; Mature: 30667
Theoretical pI: Translated: 9.15; Mature: 9.15
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGTDNNLLTVERLSVALPGAQPLVKGISFSMGQERLALVGESGSGKSLTARALMGLLPPP CCCCCCEEEHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCC LQLQAQRLTLGGDDLARLSERQWNRLRGNKVAMVMQDPKHALNPTQPIGRQVEEPLLLHT HHHHHHHEECCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCHHHHHHHCHHHHHH RLGRAERREKVLDMLAAVGLPDPAALRQRYPHQLSGGMGQRVMLAIALINDPQLLIADEP HHCHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHCCCCCHHHHHEEEEECCCEEEEECCC TSALDHQMRDQVLQLIENLVEQRNMGLILISHDLQQVAHYCERVLVMYKGELLDQLPADR HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LASATHPYTRTLWSCRPSKETHGKSLPVLDRALLESLK HHHCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCC >Mature Secondary Structure GTDNNLLTVERLSVALPGAQPLVKGISFSMGQERLALVGESGSGKSLTARALMGLLPPP CCCCCEEEHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCC LQLQAQRLTLGGDDLARLSERQWNRLRGNKVAMVMQDPKHALNPTQPIGRQVEEPLLLHT HHHHHHHEECCCHHHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCCHHHHHHHCHHHHHH RLGRAERREKVLDMLAAVGLPDPAALRQRYPHQLSGGMGQRVMLAIALINDPQLLIADEP HHCHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHCCCCCHHHHHEEEEECCCEEEEECCC TSALDHQMRDQVLQLIENLVEQRNMGLILISHDLQQVAHYCERVLVMYKGELLDQLPADR HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH LASATHPYTRTLWSCRPSKETHGKSLPVLDRALLESLK HHHCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1766370; 9384377 [H]