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The map label for this gene is ddpC [H]

Identifier: 157371154

GI number: 157371154

Start: 3207196

End: 3208065

Strand: Reverse

Name: ddpC [H]

Synonym: Spro_2914

Alternate gene names: 157371154

Gene position: 3208065-3207196 (Counterclockwise)

Preceding gene: 157371155

Following gene: 157371153

Centisome position: 58.88

GC content: 61.15

Gene sequence:

>870_bases
ATGAGCCAATATCTTTCTGAACATGAACCCCAGGGCGCACCGGCCGCCGCTTACCGCCCACGCGGCCGACTGACCACGCT
AACGATTGGCGCAACGCTGGTGGCTATTTTAATCCTCACTGCGCTGTTGGCCCCCTGGCTGGCGCCGTTCGATCCCAATT
TGCAACACATCGAGCTGCGGCTGTTGCCGCCTTCTTCCGGCCATTGGCTGGGCACCGACGGCTTTGGTCGTGACCTGTTG
TCACGGGTGATTTACGGGGCCAGGCCAACGCTGATCCTGGTGTCATTGATCCTGCTGCTGACCATTCCGATTGGCCTGCT
GGTGGGCATTAGCGCCGGTTATCTCGGTGGCTGGGTCGAGCGTATTCTGATGCGCATAACCGATATTTTTCTGTCGTTGC
CCAGCCTGGTGATCGCACTGGCGTTTGTTGCCGTGCTGGGGCCGGGGTTGATGAACGGTGCGCTGGCGTTGGCGTTAACC
AGTTGGCCTTCTTTCGCCCGGCAGGCGCGGGCAGAAACGCTGGCGCTGCGTCGCAGTGATTATTTGGCGGCGGCGCGGAT
GCAGGGCATTGGTGGTCTGCGGTTGATGATTGGGCACATTTTGCCGTTATGCCTGCCGAGTGCAGTGGTGCGTGCGGCGC
TGAGCCTGGGCGGGATTATCCTGTCTGCCGCCGGTTTGGGCTTTCTCGGCATGGGCGTGGCGCCACCGACTGCCGAATGG
GGGTCAATGGTAGCCGAGGGCAGCAAAGTGATTTTTGACCAATGGTGGGTCGCCGCGGTACCGGGTGGGGCGATCCTGTT
TGCCAGCCTGGCCTTTAACCTGTTGGGCGACGGCCTGCGCGATAAAATGGATCCTCGTCATGGGCACTGA

Upstream 100 bases:

>100_bases
CGCCAGCCATCCTGGGGGCCACCTTGCTGATTGGCACCTGTTTTGTGGTGCTTAATGCGCTGGCCGACGCGCTGACCTAT
TTAGTGGACCCGCGAACCCG

Downstream 100 bases:

>100_bases
TAACAATTTATTGACCGTTGAACGGCTATCGGTAGCGCTGCCGGGCGCGCAGCCGCTGGTCAAAGGCATTTCTTTCAGCA
TGGGACAGGAGCGGCTGGCG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MSQYLSEHEPQGAPAAAYRPRGRLTTLTIGATLVAILILTALLAPWLAPFDPNLQHIELRLLPPSSGHWLGTDGFGRDLL
SRVIYGARPTLILVSLILLLTIPIGLLVGISAGYLGGWVERILMRITDIFLSLPSLVIALAFVAVLGPGLMNGALALALT
SWPSFARQARAETLALRRSDYLAAARMQGIGGLRLMIGHILPLCLPSAVVRAALSLGGIILSAAGLGFLGMGVAPPTAEW
GSMVAEGSKVIFDQWWVAAVPGGAILFASLAFNLLGDGLRDKMDPRHGH

Sequences:

>Translated_289_residues
MSQYLSEHEPQGAPAAAYRPRGRLTTLTIGATLVAILILTALLAPWLAPFDPNLQHIELRLLPPSSGHWLGTDGFGRDLL
SRVIYGARPTLILVSLILLLTIPIGLLVGISAGYLGGWVERILMRITDIFLSLPSLVIALAFVAVLGPGLMNGALALALT
SWPSFARQARAETLALRRSDYLAAARMQGIGGLRLMIGHILPLCLPSAVVRAALSLGGIILSAAGLGFLGMGVAPPTAEW
GSMVAEGSKVIFDQWWVAAVPGGAILFASLAFNLLGDGLRDKMDPRHGH
>Mature_288_residues
SQYLSEHEPQGAPAAAYRPRGRLTTLTIGATLVAILILTALLAPWLAPFDPNLQHIELRLLPPSSGHWLGTDGFGRDLLS
RVIYGARPTLILVSLILLLTIPIGLLVGISAGYLGGWVERILMRITDIFLSLPSLVIALAFVAVLGPGLMNGALALALTS
WPSFARQARAETLALRRSDYLAAARMQGIGGLRLMIGHILPLCLPSAVVRAALSLGGIILSAAGLGFLGMGVAPPTAEWG
SMVAEGSKVIFDQWWVAAVPGGAILFASLAFNLLGDGLRDKMDPRHGH

Specific function: Part of the ABC transporter complex ddpABCDF, which is probably involved in D,D-dipeptide transport. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=268, Percent_Identity=44.7761194029851, Blast_Score=231, Evalue=5e-62,
Organism=Escherichia coli, GI1789964, Length=255, Percent_Identity=45.4901960784314, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1787054, Length=271, Percent_Identity=40.590405904059, Blast_Score=194, Evalue=6e-51,
Organism=Escherichia coli, GI1789889, Length=250, Percent_Identity=40, Blast_Score=183, Evalue=9e-48,
Organism=Escherichia coli, GI1787498, Length=272, Percent_Identity=33.4558823529412, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787549, Length=281, Percent_Identity=32.7402135231317, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1788505, Length=226, Percent_Identity=29.2035398230088, Blast_Score=96, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30556; Mature: 30425

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQYLSEHEPQGAPAAAYRPRGRLTTLTIGATLVAILILTALLAPWLAPFDPNLQHIELR
CCCCHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
LLPPSSGHWLGTDGFGRDLLSRVIYGARPTLILVSLILLLTIPIGLLVGISAGYLGGWVE
EECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RILMRITDIFLSLPSLVIALAFVAVLGPGLMNGALALALTSWPSFARQARAETLALRRSD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
YLAAARMQGIGGLRLMIGHILPLCLPSAVVRAALSLGGIILSAAGLGFLGMGVAPPTAEW
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
GSMVAEGSKVIFDQWWVAAVPGGAILFASLAFNLLGDGLRDKMDPRHGH
HHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCCCC
>Mature Secondary Structure 
SQYLSEHEPQGAPAAAYRPRGRLTTLTIGATLVAILILTALLAPWLAPFDPNLQHIELR
CCCHHHCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEE
LLPPSSGHWLGTDGFGRDLLSRVIYGARPTLILVSLILLLTIPIGLLVGISAGYLGGWVE
EECCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RILMRITDIFLSLPSLVIALAFVAVLGPGLMNGALALALTSWPSFARQARAETLALRRSD
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
YLAAARMQGIGGLRLMIGHILPLCLPSAVVRAALSLGGIILSAAGLGFLGMGVAPPTAEW
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
GSMVAEGSKVIFDQWWVAAVPGGAILFASLAFNLLGDGLRDKMDPRHGH
HHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 9751644 [H]