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The map label for this gene is lpfC [H]

Identifier: 157371114

GI number: 157371114

Start: 3153196

End: 3155718

Strand: Direct

Name: lpfC [H]

Synonym: Spro_2874

Alternate gene names: 157371114

Gene position: 3153196-3155718 (Clockwise)

Preceding gene: 157371113

Following gene: 157371115

Centisome position: 57.87

GC content: 58.11

Gene sequence:

>2523_bases
ATGAGCACGGAAACAGACCGACGATATCGCCAAGTGCCTCTGGCGGGGCTAATAGTCTTGCAACTGGTGTTACAGCCGAC
AGCACAAAGTCGTGATTATTTTAACCCGGCATTGCTGACTATTGGGACACCCCAACAGGATGGCGTGGACTTATCGGCAT
TTGAGAACGCCGGTGGGCAAATACCCGGCGTTTATCGGGTCGATATTTTTCTTAATCAGCAAATGGTGGCGACACGCTCG
GTGACTTTTCATGCCGACCCCAAGGGGGATGGCCTACAACCCTGCCTGAGCATGGCGGAACTGGGCGATTACGGCGTTCA
GGTGAGTCGCTTTCCAACTCTGGGGGCCGCAGACAGCACCTGTGTCGATCTGACGGCAATACCACAGGCTTCATCACGTT
TGCAGTTTAACCAGCAGCGGTTGCTGCTGAGCATTCCACAGGCGGCGATTAAACAGCAGCCGCGCGGTTATGTTTCCCCG
GCACAATGGGACGAAGGCGTTCCAGCGCTATTACTTAACTATAGCCTGAGCGGGGCCAACACCTATGCCAGAAATGAGAG
TGGGAGCAATGGCAACAATCAGTATGCCAACCTGCGCCCAGGAGCGAACCTCGGGCCATGGCGGTTGCGTAACTACACCA
CCTGGGGTCGCGACAGTGACGGACAAGACAAGTGGAATACGGTTTATACCTACGCCCAGCGTAACCTGATTGGGTTACAG
AGCCAGATGACATTGGGTGACAGCAACGCGCCCAGTGAGGTGTTTGACGCAGTGCCCTTCCGTGGCGGACAACTGGCTTC
GGATGACGACATGCTACCGGATAGCCTGCGAGGTTATGCGCCGATAGTCCGCGGCATTGCCCGAACCAATGCCCAGGTGG
TAGTACGCCAAAACGGCTATGAGATTTACCGTACCTATGTAGCGCCGGGGGCATTTGTTATTGACGATATGTACCCCACC
GGCGGCAGCGGCGACCTGCATGTCACCATCAAAGAAGCCGATGGCAGCGAACAACAGCTAGTGGTGCCCTTCGCCTCCCT
ACCCGTGTTGCAGCGTGAAGGACGGCTCAAATACAGCCTGACGGCAGGCCAATACCGCAGTTATGACCACAGCGTGGATA
AAAGTGCCCTGATGCAGGGAACGGCCATTTATGGTCTGCCGTGGAACAGTACTTTGTATGGTGGCGTGCAGATGGCACAG
CGTTACCAGTCGGCCGCACTGGGGGTGGGCAACAACCTTGGTGACTGGGGGGCATTCTCGGTGGATGTGACCCAGTCGCG
GGGCCAGCAAAAAGGGCTGGACAGACAGACCGGGCAGTCGTGGCGTATGCGTTACAGCAAAAATATGGTGCAGACCGGCA
CCAACTTCGCTATTGCCGGTTATCGCTATTCGACGGCGGGGTTTTATGCCCTGTCGGAGGTGTTGGACACCTGGCGTAGC
GGAGAGATGGCCTACTGGGCGTATGAGCGGCGACGCAACCGGGCGGAACTGAGCATGAGCCAGCAGTTATGGCAGGACGG
CGGTTCGCTCTCGCTCAGTGCGATACGCGAAGATTACTGGAACAGCGATCGCAGCATGGCCTCGTTGGGACTGGGCTACA
GCAACAGTTGGCAAGGGATCAGCTACGGGGTGAACTGGAGTTATAACCGTAATAGTTTCGGGCCGCAGCGCAGTAACGAC
CAGCAAATCGTCTTCAATCTCAACATGCCGCTAAACCTGTGGGACAACAACAGCAGTTGGGTGAACTACAACCTGAACAA
TACCAAGGGCGGTGCGACCAGCCAGTCTCTGGGGCTGAGCGGGATGGCGCTACGGGATAACAGCCTGAGTTGGGCGGCGC
AGCAGAATTATGGCAGCCGAGGGCAAGGTTACGGCGGCAACCTTAATCTGGACTATAAGGGGACTTACGGCGAGCTTAGC
TCGGGCTACGGTTATGACCGCAACAGCCAGCGGCTGAATTATGGTCTGCAAGGCAGCGTGGTGGCGCATGCCAGTGGCGT
GACCCTGGGGCAACCCCTGGGCGAGACGGCAGCGCTGGTGGCCATGCCCGGCGCAGCCGGTGTGAGCGTCAATAACCAGA
CCGGTGTGCGCACTGACTGGCGTGGTTATGCGTTGGTGCCGTACCTGACCCCCTATCGCAGTACCGACGTCACGCTGGCG
ACAGAAACCTTATCGGCAGATACCGACGTGGCACAAACCAGCCACCGTGTGGTACCCACGCGCGGAGCGCTGGTGAGGGC
GACGTTCAGCGCCAAAGTGGGTGCGAGGGCGCTGATGACGCTAACGCAAGGCAATGGCAAGCCGGTGCCCTTTGGCGCCA
CGGTGAGCGAAGCCGATCAAAACGCGGCACAAGGCAGCATCGTCGGTGATGCCGGGCAGGTCTACCTGAGTGGCCTCGCT
GAGCAAGGGAAACTGAGGGTGCTATGGGGAAACGGCAATACCGGTCAGTGCTGGGTCAATTATCAATTGCCCACCACGCC
CCAGCCGGGTGGCGTAGTGCAAATCAATGAGGTGTGCAGATGA

Upstream 100 bases:

>100_bases
CAACGATTTTGGCGGTAGCGGTGCCACCCTGCAAGGCAGATTAGCAGGGTGATGTTGGCTCTTCACAGTGAGGTGAAAAG
GCAAACAAGGGAGTGTAGCA

Downstream 100 bases:

>100_bases
ATATTCCAATAAAAAAAAGAAGGCTGACAATCGCAACAACATATTGCCTAAAGACGCGATGCCTGGTGGCTGGCGTCGCG
CTGATGGGGTTGTATAGCCA

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 840; Mature: 839

Protein sequence:

>840_residues
MSTETDRRYRQVPLAGLIVLQLVLQPTAQSRDYFNPALLTIGTPQQDGVDLSAFENAGGQIPGVYRVDIFLNQQMVATRS
VTFHADPKGDGLQPCLSMAELGDYGVQVSRFPTLGAADSTCVDLTAIPQASSRLQFNQQRLLLSIPQAAIKQQPRGYVSP
AQWDEGVPALLLNYSLSGANTYARNESGSNGNNQYANLRPGANLGPWRLRNYTTWGRDSDGQDKWNTVYTYAQRNLIGLQ
SQMTLGDSNAPSEVFDAVPFRGGQLASDDDMLPDSLRGYAPIVRGIARTNAQVVVRQNGYEIYRTYVAPGAFVIDDMYPT
GGSGDLHVTIKEADGSEQQLVVPFASLPVLQREGRLKYSLTAGQYRSYDHSVDKSALMQGTAIYGLPWNSTLYGGVQMAQ
RYQSAALGVGNNLGDWGAFSVDVTQSRGQQKGLDRQTGQSWRMRYSKNMVQTGTNFAIAGYRYSTAGFYALSEVLDTWRS
GEMAYWAYERRRNRAELSMSQQLWQDGGSLSLSAIREDYWNSDRSMASLGLGYSNSWQGISYGVNWSYNRNSFGPQRSND
QQIVFNLNMPLNLWDNNSSWVNYNLNNTKGGATSQSLGLSGMALRDNSLSWAAQQNYGSRGQGYGGNLNLDYKGTYGELS
SGYGYDRNSQRLNYGLQGSVVAHASGVTLGQPLGETAALVAMPGAAGVSVNNQTGVRTDWRGYALVPYLTPYRSTDVTLA
TETLSADTDVAQTSHRVVPTRGALVRATFSAKVGARALMTLTQGNGKPVPFGATVSEADQNAAQGSIVGDAGQVYLSGLA
EQGKLRVLWGNGNTGQCWVNYQLPTTPQPGGVVQINEVCR

Sequences:

>Translated_840_residues
MSTETDRRYRQVPLAGLIVLQLVLQPTAQSRDYFNPALLTIGTPQQDGVDLSAFENAGGQIPGVYRVDIFLNQQMVATRS
VTFHADPKGDGLQPCLSMAELGDYGVQVSRFPTLGAADSTCVDLTAIPQASSRLQFNQQRLLLSIPQAAIKQQPRGYVSP
AQWDEGVPALLLNYSLSGANTYARNESGSNGNNQYANLRPGANLGPWRLRNYTTWGRDSDGQDKWNTVYTYAQRNLIGLQ
SQMTLGDSNAPSEVFDAVPFRGGQLASDDDMLPDSLRGYAPIVRGIARTNAQVVVRQNGYEIYRTYVAPGAFVIDDMYPT
GGSGDLHVTIKEADGSEQQLVVPFASLPVLQREGRLKYSLTAGQYRSYDHSVDKSALMQGTAIYGLPWNSTLYGGVQMAQ
RYQSAALGVGNNLGDWGAFSVDVTQSRGQQKGLDRQTGQSWRMRYSKNMVQTGTNFAIAGYRYSTAGFYALSEVLDTWRS
GEMAYWAYERRRNRAELSMSQQLWQDGGSLSLSAIREDYWNSDRSMASLGLGYSNSWQGISYGVNWSYNRNSFGPQRSND
QQIVFNLNMPLNLWDNNSSWVNYNLNNTKGGATSQSLGLSGMALRDNSLSWAAQQNYGSRGQGYGGNLNLDYKGTYGELS
SGYGYDRNSQRLNYGLQGSVVAHASGVTLGQPLGETAALVAMPGAAGVSVNNQTGVRTDWRGYALVPYLTPYRSTDVTLA
TETLSADTDVAQTSHRVVPTRGALVRATFSAKVGARALMTLTQGNGKPVPFGATVSEADQNAAQGSIVGDAGQVYLSGLA
EQGKLRVLWGNGNTGQCWVNYQLPTTPQPGGVVQINEVCR
>Mature_839_residues
STETDRRYRQVPLAGLIVLQLVLQPTAQSRDYFNPALLTIGTPQQDGVDLSAFENAGGQIPGVYRVDIFLNQQMVATRSV
TFHADPKGDGLQPCLSMAELGDYGVQVSRFPTLGAADSTCVDLTAIPQASSRLQFNQQRLLLSIPQAAIKQQPRGYVSPA
QWDEGVPALLLNYSLSGANTYARNESGSNGNNQYANLRPGANLGPWRLRNYTTWGRDSDGQDKWNTVYTYAQRNLIGLQS
QMTLGDSNAPSEVFDAVPFRGGQLASDDDMLPDSLRGYAPIVRGIARTNAQVVVRQNGYEIYRTYVAPGAFVIDDMYPTG
GSGDLHVTIKEADGSEQQLVVPFASLPVLQREGRLKYSLTAGQYRSYDHSVDKSALMQGTAIYGLPWNSTLYGGVQMAQR
YQSAALGVGNNLGDWGAFSVDVTQSRGQQKGLDRQTGQSWRMRYSKNMVQTGTNFAIAGYRYSTAGFYALSEVLDTWRSG
EMAYWAYERRRNRAELSMSQQLWQDGGSLSLSAIREDYWNSDRSMASLGLGYSNSWQGISYGVNWSYNRNSFGPQRSNDQ
QIVFNLNMPLNLWDNNSSWVNYNLNNTKGGATSQSLGLSGMALRDNSLSWAAQQNYGSRGQGYGGNLNLDYKGTYGELSS
GYGYDRNSQRLNYGLQGSVVAHASGVTLGQPLGETAALVAMPGAAGVSVNNQTGVRTDWRGYALVPYLTPYRSTDVTLAT
ETLSADTDVAQTSHRVVPTRGALVRATFSAKVGARALMTLTQGNGKPVPFGATVSEADQNAAQGSIVGDAGQVYLSGLAE
QGKLRVLWGNGNTGQCWVNYQLPTTPQPGGVVQINEVCR

Specific function: Involved in the export and assembly of lpfA fimbrial subunits across the outer membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1787172, Length=855, Percent_Identity=41.8713450292398, Blast_Score=653, Evalue=0.0,
Organism=Escherichia coli, GI1790772, Length=875, Percent_Identity=41.7142857142857, Blast_Score=646, Evalue=0.0,
Organism=Escherichia coli, GI1786744, Length=878, Percent_Identity=40.7744874715262, Blast_Score=624, Evalue=1e-179,
Organism=Escherichia coli, GI1789533, Length=825, Percent_Identity=39.3939393939394, Blast_Score=570, Evalue=1e-163,
Organism=Escherichia coli, GI1786332, Length=830, Percent_Identity=31.8072289156626, Blast_Score=364, Evalue=1e-101,
Organism=Escherichia coli, GI1788427, Length=808, Percent_Identity=28.4653465346535, Blast_Score=301, Evalue=2e-82,
Organism=Escherichia coli, GI87081778, Length=812, Percent_Identity=27.9556650246305, Blast_Score=275, Evalue=8e-75,
Organism=Escherichia coli, GI1789610, Length=781, Percent_Identity=24.9679897567222, Blast_Score=160, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 91423; Mature: 91291

Theoretical pI: Translated: 7.88; Mature: 7.88

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTETDRRYRQVPLAGLIVLQLVLQPTAQSRDYFNPALLTIGTPQQDGVDLSAFENAGGQ
CCCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCC
IPGVYRVDIFLNQQMVATRSVTFHADPKGDGLQPCLSMAELGDYGVQVSRFPTLGAADST
CCCEEEEEEEECCEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC
CVDLTAIPQASSRLQFNQQRLLLSIPQAAIKQQPRGYVSPAQWDEGVPALLLNYSLSGAN
EEEEEECCCCCHHCEECCCCEEEECCHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCC
TYARNESGSNGNNQYANLRPGANLGPWRLRNYTTWGRDSDGQDKWNTVYTYAQRNLIGLQ
EEECCCCCCCCCCCEEEECCCCCCCCEEECCEECCCCCCCCCCCCCEEEEEECCCEEECC
SQMTLGDSNAPSEVFDAVPFRGGQLASDDDMLPDSLRGYAPIVRGIARTNAQVVVRQNGY
CEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
EIYRTYVAPGAFVIDDMYPTGGSGDLHVTIKEADGSEQQLVVPFASLPVLQREGRLKYSL
EEEEEEECCCEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEHHHCCHHHCCCCEEEEE
TAGQYRSYDHSVDKSALMQGTAIYGLPWNSTLYGGVQMAQRYQSAALGVGNNLGDWGAFS
ECCCCCCCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
VDVTQSRGQQKGLDRQTGQSWRMRYSKNMVQTGTNFAIAGYRYSTAGFYALSEVLDTWRS
EEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHC
GEMAYWAYERRRNRAELSMSQQLWQDGGSLSLSAIREDYWNSDRSMASLGLGYSNSWQGI
CCEEEEEHHHHCCHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCHHHHCCCCCCCCCCE
SYGVNWSYNRNSFGPQRSNDQQIVFNLNMPLNLWDNNSSWVNYNLNNTKGGATSQSLGLS
EECEEECCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCEEEEECCCCCCCCCCCCCCCC
GMALRDNSLSWAAQQNYGSRGQGYGGNLNLDYKGTYGELSSGYGYDRNSQRLNYGLQGSV
EEEEECCCCCCHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
VAHASGVTLGQPLGETAALVAMPGAAGVSVNNQTGVRTDWRGYALVPYLTPYRSTDVTLA
EEEECCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEE
TETLSADTDVAQTSHRVVPTRGALVRATFSAKVGARALMTLTQGNGKPVPFGATVSEADQ
EEECCCCCCHHHCCCCEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHCCC
NAAQGSIVGDAGQVYLSGLAEQGKLRVLWGNGNTGQCWVNYQLPTTPQPGGVVQINEVCR
CCCCCCEECCCHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEHHHHCC
>Mature Secondary Structure 
STETDRRYRQVPLAGLIVLQLVLQPTAQSRDYFNPALLTIGTPQQDGVDLSAFENAGGQ
CCCCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCCCCC
IPGVYRVDIFLNQQMVATRSVTFHADPKGDGLQPCLSMAELGDYGVQVSRFPTLGAADST
CCCEEEEEEEECCEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCC
CVDLTAIPQASSRLQFNQQRLLLSIPQAAIKQQPRGYVSPAQWDEGVPALLLNYSLSGAN
EEEEEECCCCCHHCEECCCCEEEECCHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCC
TYARNESGSNGNNQYANLRPGANLGPWRLRNYTTWGRDSDGQDKWNTVYTYAQRNLIGLQ
EEECCCCCCCCCCCEEEECCCCCCCCEEECCEECCCCCCCCCCCCCEEEEEECCCEEECC
SQMTLGDSNAPSEVFDAVPFRGGQLASDDDMLPDSLRGYAPIVRGIARTNAQVVVRQNGY
CEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCC
EIYRTYVAPGAFVIDDMYPTGGSGDLHVTIKEADGSEQQLVVPFASLPVLQREGRLKYSL
EEEEEEECCCEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEHHHCCHHHCCCCEEEEE
TAGQYRSYDHSVDKSALMQGTAIYGLPWNSTLYGGVQMAQRYQSAALGVGNNLGDWGAFS
ECCCCCCCCCCCCHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEE
VDVTQSRGQQKGLDRQTGQSWRMRYSKNMVQTGTNFAIAGYRYSTAGFYALSEVLDTWRS
EEEHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCHHHHHHHHHHHHHHC
GEMAYWAYERRRNRAELSMSQQLWQDGGSLSLSAIREDYWNSDRSMASLGLGYSNSWQGI
CCEEEEEHHHHCCHHHHHHHHHHHHCCCCEEHHHHHHHHCCCCCCHHHHCCCCCCCCCCE
SYGVNWSYNRNSFGPQRSNDQQIVFNLNMPLNLWDNNSSWVNYNLNNTKGGATSQSLGLS
EECEEECCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCEEEEECCCCCCCCCCCCCCCC
GMALRDNSLSWAAQQNYGSRGQGYGGNLNLDYKGTYGELSSGYGYDRNSQRLNYGLQGSV
EEEEECCCCCCHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCE
VAHASGVTLGQPLGETAALVAMPGAAGVSVNNQTGVRTDWRGYALVPYLTPYRSTDVTLA
EEEECCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCCCCCCEEEEEEECCCCCCCEEEE
TETLSADTDVAQTSHRVVPTRGALVRATFSAKVGARALMTLTQGNGKPVPFGATVSEADQ
EEECCCCCCHHHCCCCEECCCCEEEEEEECCCCCCEEEEEEECCCCCCCCCCCCHHHCCC
NAAQGSIVGDAGQVYLSGLAEQGKLRVLWGNGNTGQCWVNYQLPTTPQPGGVVQINEVCR
CCCCCCEECCCHHHHHHHHCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCEEEHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7721701; 11677609 [H]