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The map label for this gene is cydB [H]

Identifier: 157371100

GI number: 157371100

Start: 3140569

End: 3141576

Strand: Direct

Name: cydB [H]

Synonym: Spro_2860

Alternate gene names: 157371100

Gene position: 3140569-3141576 (Clockwise)

Preceding gene: 157371099

Following gene: 157371101

Centisome position: 57.64

GC content: 58.73

Gene sequence:

>1008_bases
ATGGGCATTGATCTTCCGCTGATTTGGTTTGTGATCATCGTGTTCAGCACCATGATGTACGTGGTAATGGACGGCTTTGA
TTTGGGTATCGGCATCCTGTTCCCCTGGGTTAAGGACAGCGGTGACCGTGATGTGATGATGAACACCGTCGCCCCGGTGT
GGGACGGCAATGAAACCTGGCTGGTACTGGGAGGAGCGGCGCTGTTTGGCGCCTTCCCATTGGCTTACGCGGTGATCCTC
GACGCGCTGGCCATTCCGCTGACCCTGATGTTGTTTGGCCTGATCTTCCGCGGCGTGGCCTTTGAGTTTCGCTTCAAGGC
CACGGCGGAAAAACGTCACATCTGGGACAAGGCGTTCATCTGGGGATCAGTGTTCGCCACCTTTAGCCAGGGGGTGGTAG
TGGGTGCCATCATCAAGGGTTTCCCGGTCAACGGCCGCACCTATGCCGGTGGCGCCCTCGACTGGCTGACCCCGTTCGCG
CTGTTTTGCGGGTTGGGGCTGGTGGTGACCTATGCGTTGCTCGGCTGCACCTGGCTGGTGATGAAAACCGCCGGTGACCT
GCAGGCGCGGATGTACCGGCTGGCAATGCCACTGTTGGCTACCCTGCTGCTGGTGTTGGCGGTAGTCAGTATCTGGACGC
CGATTGCTCACCCGGAGATCGCCAACCGCTGGTTCTCACTGCCGAATCTATTTGTGCTGCTGCCGGTGCCGATCCTGGTG
CTGCTCAGCGCCTGGGGCATTGGGCATGGGGTGAAAAATGCGGCGCACTACTCGCCGTTCTTGCTCACCCTGCTGTTGGT
GTTCCTCGGCCTCAGTGGGTTGGGCATCAGCATTTGGCCACTGTTGATCCCCCCTTCCATCACGCTGTGGCAAGCCGCTG
CGCCGCCGCAAAGTCTGGGCTTTATGCTGGTTGGCGCGCTGTTTATCATTCCGATTATTTTGGTTTACACCTTCTGGAGC
TACTACGTGTTCCGCGGCAAGGTCAGCCATGAACAGGGTTATCACTGA

Upstream 100 bases:

>100_bases
AAGGGCCGCAGCAGCATGAAGTGCATGAAGATGACACCGAAGGCCGACCGGCACGTCCGCTGTCTGCGGTGAAAGAAACT
CTGGATGACAGGAGCTGAGC

Downstream 100 bases:

>100_bases
TGAGGGAAGAAACTATGCAGGATAAAACCGCACCTGTACCGGCCCCCTGGTGGAAACGCGTCGGCTGGCTGGTCGTGATC
TGGAGCGCCAGCGTGCTGGG

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-I oxidase subunit II; Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 335; Mature: 334

Protein sequence:

>335_residues
MGIDLPLIWFVIIVFSTMMYVVMDGFDLGIGILFPWVKDSGDRDVMMNTVAPVWDGNETWLVLGGAALFGAFPLAYAVIL
DALAIPLTLMLFGLIFRGVAFEFRFKATAEKRHIWDKAFIWGSVFATFSQGVVVGAIIKGFPVNGRTYAGGALDWLTPFA
LFCGLGLVVTYALLGCTWLVMKTAGDLQARMYRLAMPLLATLLLVLAVVSIWTPIAHPEIANRWFSLPNLFVLLPVPILV
LLSAWGIGHGVKNAAHYSPFLLTLLLVFLGLSGLGISIWPLLIPPSITLWQAAAPPQSLGFMLVGALFIIPIILVYTFWS
YYVFRGKVSHEQGYH

Sequences:

>Translated_335_residues
MGIDLPLIWFVIIVFSTMMYVVMDGFDLGIGILFPWVKDSGDRDVMMNTVAPVWDGNETWLVLGGAALFGAFPLAYAVIL
DALAIPLTLMLFGLIFRGVAFEFRFKATAEKRHIWDKAFIWGSVFATFSQGVVVGAIIKGFPVNGRTYAGGALDWLTPFA
LFCGLGLVVTYALLGCTWLVMKTAGDLQARMYRLAMPLLATLLLVLAVVSIWTPIAHPEIANRWFSLPNLFVLLPVPILV
LLSAWGIGHGVKNAAHYSPFLLTLLLVFLGLSGLGISIWPLLIPPSITLWQAAAPPQSLGFMLVGALFIIPIILVYTFWS
YYVFRGKVSHEQGYH
>Mature_334_residues
GIDLPLIWFVIIVFSTMMYVVMDGFDLGIGILFPWVKDSGDRDVMMNTVAPVWDGNETWLVLGGAALFGAFPLAYAVILD
ALAIPLTLMLFGLIFRGVAFEFRFKATAEKRHIWDKAFIWGSVFATFSQGVVVGAIIKGFPVNGRTYAGGALDWLTPFAL
FCGLGLVVTYALLGCTWLVMKTAGDLQARMYRLAMPLLATLLLVLAVVSIWTPIAHPEIANRWFSLPNLFVLLPVPILVL
LSAWGIGHGVKNAAHYSPFLLTLLLVFLGLSGLGISIWPLLIPPSITLWQAAAPPQSLGFMLVGALFIIPIILVYTFWSY
YVFRGKVSHEQGYH

Specific function: Cytochrome d terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at low aeration [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli AppB [H]

Homologues:

Organism=Escherichia coli, GI1786954, Length=368, Percent_Identity=28.804347826087, Blast_Score=141, Evalue=7e-35,
Organism=Escherichia coli, GI1787213, Length=362, Percent_Identity=30.939226519337, Blast_Score=140, Evalue=9e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 36856; Mature: 36724

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGIDLPLIWFVIIVFSTMMYVVMDGFDLGIGILFPWVKDSGDRDVMMNTVAPVWDGNETW
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCCCEE
LVLGGAALFGAFPLAYAVILDALAIPLTLMLFGLIFRGVAFEFRFKATAEKRHIWDKAFI
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHH
WGSVFATFSQGVVVGAIIKGFPVNGRTYAGGALDWLTPFALFCGLGLVVTYALLGCTWLV
HHHHHHHHHCCHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKTAGDLQARMYRLAMPLLATLLLVLAVVSIWTPIAHPEIANRWFSLPNLFVLLPVPILV
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
LLSAWGIGHGVKNAAHYSPFLLTLLLVFLGLSGLGISIWPLLIPPSITLWQAAAPPQSLG
HHHHHCCCCCCCCHHHCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCHHHHH
FMLVGALFIIPIILVYTFWSYYVFRGKVSHEQGYH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
GIDLPLIWFVIIVFSTMMYVVMDGFDLGIGILFPWVKDSGDRDVMMNTVAPVWDGNETW
CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHCCCCCCCCCEE
LVLGGAALFGAFPLAYAVILDALAIPLTLMLFGLIFRGVAFEFRFKATAEKRHIWDKAFI
EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECHHHHHHHHHHHHH
WGSVFATFSQGVVVGAIIKGFPVNGRTYAGGALDWLTPFALFCGLGLVVTYALLGCTWLV
HHHHHHHHHCCHHHHHHHHCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKTAGDLQARMYRLAMPLLATLLLVLAVVSIWTPIAHPEIANRWFSLPNLFVLLPVPILV
HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
LLSAWGIGHGVKNAAHYSPFLLTLLLVFLGLSGLGISIWPLLIPPSITLWQAAAPPQSLG
HHHHHCCCCCCCCHHHCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCHHHHH
FMLVGALFIIPIILVYTFWSYYVFRGKVSHEQGYH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]