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The map label for this gene is yebA [H]

Identifier: 157371012

GI number: 157371012

Start: 3052762

End: 3054084

Strand: Reverse

Name: yebA [H]

Synonym: Spro_2772

Alternate gene names: 157371012

Gene position: 3054084-3052762 (Counterclockwise)

Preceding gene: 157371013

Following gene: 157371011

Centisome position: 56.05

GC content: 55.33

Gene sequence:

>1323_bases
GTGCAGCAGATAGTCAAAACTATCGCTCTGGCGTATAACAACCTGCCACGGCCCCACCGCGTCATGCTGGGGTCGTTGAC
AGTGGTTACATTGGCCGTTGCCGTCTGGCGGCCTTTTGTTTATCACCCAGAACATAACCCCATCGTTAAGAGTATCGAAT
TAGAATCCAGCCAGTTACGATCCTTGCTGCCAGAAGCCAGTGAGCCGATCGATCTTGACCAAGCCACCCCCGATGATGAC
ATCCCACAGGATGAGCTGGACCAGAAGGTCGCCGGCGAGGATGGAGTGCATGAATATGTCGTTTCCACGGGTGACACCCT
CGGCAGTATCCTGACCCAATATGGCATCGATATGTCGGACGTCACGCTGTTGGCATCGCAGAACCGCGATCTGCGTAATC
TGAAAATTGGCCAACAGCTGTCATGGACAGTGAACGATGCGGGCGATCTGCAGCGTTTGACCTGGGAAGTGTCCCGCCGC
GAGACCCGTACTTACGATCGTACGGGCAACAGCTTCAAAGAAAGTCAGGAATCTCAACAGGGTGAATGGCGTAATAATGT
GATCAGCGGCCGACTCAACGGCAGCTTTGTCACCAGCGCCGCTAACGCCGGCCTGAGCCGTGCCGAAATCAATGCGGTGA
TCAAGGCGCTGCAGTGGCAGTTGGATTTCCGCAAACTGCGCAAGGGCGATCAATTCTCGGTATTGATGTCCCGCGAACAC
TTTGATGGCAAGAGTGCGCAGAGCCAGTTGCTGGGTGTGCGTATGCGCACCGGCGGTAAGGACTACTACGCTATTCGTGC
CGAAGACGGTAAATTCTACGATCGTCAAGGTTCTGGTCTGGCGAAAGGCTTTATGCGTTTCCCGACCATGAAGCAATTCC
GCATTTCCTCAAACTTCAACCCACGCCGGGTTAACCCGGTCACCGGGCGCATTGCGCCGCATAAAGGCGTCGACTTCGCG
ATGCCGGTTGGCACCCCGGTGCTGGCCGTAGGTGACGGTGAAGTACTGATCGCCAAACGCAGTGGCGCTGCGGGTAACTA
TGTGGCCATTCGTCATGGTCGCCAGTACACCACGCGTTATATGCATCTGAAAAAACTGTTGGTTAAGCCAGGTCAGAAAG
TGAAGCGTGGTGATCGTATTGCGTTGTCCGGTAACACCGGCCGCTCTACCGGCCCACATCTGCACTTTGAAATGTGGACC
AACCAACAGGCCGTGAACCCGTTGACGGCGAAACTGCCGCGCTCTGAAGGGTTGACCGGTAAAGATCGCAGTGATTATCT
GGCGCAGGTGAAGGAAGTCACCCCGCAGCTGCAGTTGGATTAA

Upstream 100 bases:

>100_bases
CGGCATCGCACTGGGGAAAGACAGCTACGGGAACTTCCTGACTCAGCTGTCAAACCAGTACGTGAGCTGCCTGAAGTAAA
GATTATGAGGATAAAATCGA

Downstream 100 bases:

>100_bases
TCCCTTGTTCAGGCGCTACGCGCCAGTGATACCATCGGCCTGATTTCGGGCCGATGTTGTTTTATATTGGCGCTTCGCCG
TGGTTAATTGCAAAATCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MQQIVKTIALAYNNLPRPHRVMLGSLTVVTLAVAVWRPFVYHPEHNPIVKSIELESSQLRSLLPEASEPIDLDQATPDDD
IPQDELDQKVAGEDGVHEYVVSTGDTLGSILTQYGIDMSDVTLLASQNRDLRNLKIGQQLSWTVNDAGDLQRLTWEVSRR
ETRTYDRTGNSFKESQESQQGEWRNNVISGRLNGSFVTSAANAGLSRAEINAVIKALQWQLDFRKLRKGDQFSVLMSREH
FDGKSAQSQLLGVRMRTGGKDYYAIRAEDGKFYDRQGSGLAKGFMRFPTMKQFRISSNFNPRRVNPVTGRIAPHKGVDFA
MPVGTPVLAVGDGEVLIAKRSGAAGNYVAIRHGRQYTTRYMHLKKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHFEMWT
NQQAVNPLTAKLPRSEGLTGKDRSDYLAQVKEVTPQLQLD

Sequences:

>Translated_440_residues
MQQIVKTIALAYNNLPRPHRVMLGSLTVVTLAVAVWRPFVYHPEHNPIVKSIELESSQLRSLLPEASEPIDLDQATPDDD
IPQDELDQKVAGEDGVHEYVVSTGDTLGSILTQYGIDMSDVTLLASQNRDLRNLKIGQQLSWTVNDAGDLQRLTWEVSRR
ETRTYDRTGNSFKESQESQQGEWRNNVISGRLNGSFVTSAANAGLSRAEINAVIKALQWQLDFRKLRKGDQFSVLMSREH
FDGKSAQSQLLGVRMRTGGKDYYAIRAEDGKFYDRQGSGLAKGFMRFPTMKQFRISSNFNPRRVNPVTGRIAPHKGVDFA
MPVGTPVLAVGDGEVLIAKRSGAAGNYVAIRHGRQYTTRYMHLKKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHFEMWT
NQQAVNPLTAKLPRSEGLTGKDRSDYLAQVKEVTPQLQLD
>Mature_440_residues
MQQIVKTIALAYNNLPRPHRVMLGSLTVVTLAVAVWRPFVYHPEHNPIVKSIELESSQLRSLLPEASEPIDLDQATPDDD
IPQDELDQKVAGEDGVHEYVVSTGDTLGSILTQYGIDMSDVTLLASQNRDLRNLKIGQQLSWTVNDAGDLQRLTWEVSRR
ETRTYDRTGNSFKESQESQQGEWRNNVISGRLNGSFVTSAANAGLSRAEINAVIKALQWQLDFRKLRKGDQFSVLMSREH
FDGKSAQSQLLGVRMRTGGKDYYAIRAEDGKFYDRQGSGLAKGFMRFPTMKQFRISSNFNPRRVNPVTGRIAPHKGVDFA
MPVGTPVLAVGDGEVLIAKRSGAAGNYVAIRHGRQYTTRYMHLKKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHFEMWT
NQQAVNPLTAKLPRSEGLTGKDRSDYLAQVKEVTPQLQLD

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=441, Percent_Identity=77.0975056689342, Blast_Score=724, Evalue=0.0,
Organism=Escherichia coli, GI87082174, Length=112, Percent_Identity=36.6071428571429, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1789099, Length=96, Percent_Identity=38.5416666666667, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 49125; Mature: 49125

Theoretical pI: Translated: 10.10; Mature: 10.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQIVKTIALAYNNLPRPHRVMLGSLTVVTLAVAVWRPFVYHPEHNPIVKSIELESSQLR
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEEEECCHHHHH
SLLPEASEPIDLDQATPDDDIPQDELDQKVAGEDGVHEYVVSTGDTLGSILTQYGIDMSD
HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHCCCHHH
VTLLASQNRDLRNLKIGQQLSWTVNDAGDLQRLTWEVSRRETRTYDRTGNSFKESQESQQ
EEEEECCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
GEWRNNVISGRLNGSFVTSAANAGLSRAEINAVIKALQWQLDFRKLRKGDQFSVLMSREH
CHHHHCEEECCCCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
FDGKSAQSQLLGVRMRTGGKDYYAIRAEDGKFYDRQGSGLAKGFMRFPTMKQFRISSNFN
CCCCHHHHHHHEEEEECCCCEEEEEEECCCCEECCCCCHHHHHHHHCCCCEEEEECCCCC
PRRVNPVTGRIAPHKGVDFAMPVGTPVLAVGDGEVLIAKRSGAAGNYVAIRHGRQYTTRY
CCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHH
MHLKKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHFEMWTNQQAVNPLTAKLPRSEGLTG
HHHHHHHHCCCHHHCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCCCCC
KDRSDYLAQVKEVTPQLQLD
CCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MQQIVKTIALAYNNLPRPHRVMLGSLTVVTLAVAVWRPFVYHPEHNPIVKSIELESSQLR
CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEEEECCHHHHH
SLLPEASEPIDLDQATPDDDIPQDELDQKVAGEDGVHEYVVSTGDTLGSILTQYGIDMSD
HHCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHCCCHHH
VTLLASQNRDLRNLKIGQQLSWTVNDAGDLQRLTWEVSRRETRTYDRTGNSFKESQESQQ
EEEEECCCCCHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHC
GEWRNNVISGRLNGSFVTSAANAGLSRAEINAVIKALQWQLDFRKLRKGDQFSVLMSREH
CHHHHCEEECCCCCCEEEHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
FDGKSAQSQLLGVRMRTGGKDYYAIRAEDGKFYDRQGSGLAKGFMRFPTMKQFRISSNFN
CCCCHHHHHHHEEEEECCCCEEEEEEECCCCEECCCCCHHHHHHHHCCCCEEEEECCCCC
PRRVNPVTGRIAPHKGVDFAMPVGTPVLAVGDGEVLIAKRSGAAGNYVAIRHGRQYTTRY
CCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCCEEEEECCCCCCCEEEEECCCHHHHHH
MHLKKLLVKPGQKVKRGDRIALSGNTGRSTGPHLHFEMWTNQQAVNPLTAKLPRSEGLTG
HHHHHHHHCCCHHHCCCCEEEEECCCCCCCCCEEEEEEECCCCCCCCHHHCCCCCCCCCC
KDRSDYLAQVKEVTPQLQLD
CCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]