Click here to switch to the map view.

The map label for this gene is ompW [H]

Identifier: 157370914

GI number: 157370914

Start: 2943874

End: 2944545

Strand: Reverse

Name: ompW [H]

Synonym: Spro_2674

Alternate gene names: 157370914

Gene position: 2944545-2943874 (Counterclockwise)

Preceding gene: 157370916

Following gene: 157370906

Centisome position: 54.04

GC content: 53.42

Gene sequence:

>672_bases
ATGATAACCACACAAATGGAATGGATAATGAAAAAGACAACTCTGGTGGTATTGGCGGCGATGATGGCCCCTATGTTGGC
AAGTGCGCATCAGGCAGGCGATTTTCTGTTCCGCGCAGGCGCGGCTACTGTGCGGCCAAATGCCGGATCGGACGACGTGC
TGGGGCAAGGCTCATTCAGTGCCGACAATAATACCCAGCTTGGTCTGACCTTCGGCTATATGGTAACGGACAATATTGGC
GTCGAACTGCTGGCCGCAACGCCATTTCGCCACAAGGTAGGGCTGAATGGTGGCGCAGTGAACGGCAACATCGCGACGGT
ACACGATTTGCCCCCGACCCTGATGGCGCAATACTATTTTGGCGACAAACAGGACAAACTGCGTCCGTACCTGGGGCTGG
GCGTTAACTACACCACCTTCTTCGATGAAAAATTCAACGACAACGGTAAAAGTGCCGGGCTGAGCAACCTGAGTTTGAAA
GACTCCTGGGGCGTAGCCGCGCAAGCCGGTCTGGATTACAACCTTGATGAACACTGGATGCTGAACATGTCAGTGTGGTG
GATGAACATCGAAACCAAAGCTCGCTTTGACGATGCGGACGGTAACCATCACAGCATTGATACGCGTTTGGATCCGTGGG
TGTTTATGTTCGGGGCAGGGTATCGCTTCTGA

Upstream 100 bases:

>100_bases
TCTTAGGTAACCTTGTTTTTAGTAGGAATTAAAACTTTTACACATAAGATGTGATCTCGATGGGATCATAAATACCCGTA
AGTAGGTATATTCCCCCTGG

Downstream 100 bases:

>100_bases
CAGGGGTGAAACAGGGAGGCGCATGCAGCGCCTCCGTTTTACTTTTACTACTTGATGTTCATGACGTTCTCAACGGATTT
CACACCCGCTACGCCACGAG

Product: outer membrane protein W

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MITTQMEWIMKKTTLVVLAAMMAPMLASAHQAGDFLFRAGAATVRPNAGSDDVLGQGSFSADNNTQLGLTFGYMVTDNIG
VELLAATPFRHKVGLNGGAVNGNIATVHDLPPTLMAQYYFGDKQDKLRPYLGLGVNYTTFFDEKFNDNGKSAGLSNLSLK
DSWGVAAQAGLDYNLDEHWMLNMSVWWMNIETKARFDDADGNHHSIDTRLDPWVFMFGAGYRF

Sequences:

>Translated_223_residues
MITTQMEWIMKKTTLVVLAAMMAPMLASAHQAGDFLFRAGAATVRPNAGSDDVLGQGSFSADNNTQLGLTFGYMVTDNIG
VELLAATPFRHKVGLNGGAVNGNIATVHDLPPTLMAQYYFGDKQDKLRPYLGLGVNYTTFFDEKFNDNGKSAGLSNLSLK
DSWGVAAQAGLDYNLDEHWMLNMSVWWMNIETKARFDDADGNHHSIDTRLDPWVFMFGAGYRF
>Mature_223_residues
MITTQMEWIMKKTTLVVLAAMMAPMLASAHQAGDFLFRAGAATVRPNAGSDDVLGQGSFSADNNTQLGLTFGYMVTDNIG
VELLAATPFRHKVGLNGGAVNGNIATVHDLPPTLMAQYYFGDKQDKLRPYLGLGVNYTTFFDEKFNDNGKSAGLSNLSLK
DSWGVAAQAGLDYNLDEHWMLNMSVWWMNIETKARFDDADGNHHSIDTRLDPWVFMFGAGYRF

Specific function: Acts as a receptor for colicin S4 [H]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=216, Percent_Identity=61.5740740740741, Blast_Score=264, Evalue=4e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 24575; Mature: 24575

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS00695 ENT_VIR_OMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITTQMEWIMKKTTLVVLAAMMAPMLASAHQAGDFLFRAGAATVRPNAGSDDVLGQGSFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCCCCCCCCCCCCCC
ADNNTQLGLTFGYMVTDNIGVELLAATPFRHKVGLNGGAVNGNIATVHDLPPTLMAQYYF
CCCCCEEEEEEEEEEECCCCEEEEEECCCHHEECCCCCCCCCCEEEEECCCHHHHHHHHC
GDKQDKLRPYLGLGVNYTTFFDEKFNDNGKSAGLSNLSLKDSWGVAAQAGLDYNLDEHWM
CCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCEEE
LNMSVWWMNIETKARFDDADGNHHSIDTRLDPWVFMFGAGYRF
EEEEEEEEEEEECEEECCCCCCCCEECCCCCCEEEEECCCCCC
>Mature Secondary Structure
MITTQMEWIMKKTTLVVLAAMMAPMLASAHQAGDFLFRAGAATVRPNAGSDDVLGQGSFS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCEECCCCCCCCCCCCCCCC
ADNNTQLGLTFGYMVTDNIGVELLAATPFRHKVGLNGGAVNGNIATVHDLPPTLMAQYYF
CCCCCEEEEEEEEEEECCCCEEEEEECCCHHEECCCCCCCCCCEEEEECCCHHHHHHHHC
GDKQDKLRPYLGLGVNYTTFFDEKFNDNGKSAGLSNLSLKDSWGVAAQAGLDYNLDEHWM
CCCCCCCCCEEECCCCEEEEECCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCCCEEE
LNMSVWWMNIETKARFDDADGNHHSIDTRLDPWVFMFGAGYRF
EEEEEEEEEEEECEEECCCCCCCCEECCCCCCEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3058546; 9097039; 9278503; 9629924; 10348872 [H]