| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is hypF [H]
Identifier: 157370663
GI number: 157370663
Start: 2655284
End: 2657581
Strand: Reverse
Name: hypF [H]
Synonym: Spro_2423
Alternate gene names: 157370663
Gene position: 2657581-2655284 (Counterclockwise)
Preceding gene: 157370664
Following gene: 157370662
Centisome position: 48.77
GC content: 62.01
Gene sequence:
>2298_bases GTGTCCCATTCAGGATTACTGCTGCGCATCAGCGGCAAGGTACAGGGCGTCGGCTTCCGGCCTTTTGTCTGGCAACTGGC CGAACAGCTCAACCTGCGTGGTGAAGTCTGGAACGACAGCGCCGGGGTGGAAATTCGCCTGGTGCAACCTGTCGATCTTG AGATACTCCTGCACGTGTTACATCACCAGGCGCCACCGTTGGCACAAATCGACCGCATTCAGCAGCGTTCGTTTACCTGG TTGCAAGCCCCCACCGATTTCAGTATCCGCCCCAGCCAAAGTGGCGCCATGGCAACCCAGATCGTGCCGGATGCCGCGAC CTGCCCACAGTGTTTGCGGGAAATGAACGATCCGCAGGATCGGCGTTACCGTTATCCCTTTATCAACTGCACCCATTGCG GCCCGCGCTTTACCATTATTCGCGCCATGCCATACGATCGTCCGGCAACCAGCATGGCGCCCTTCACTCTCTGTCCGCAC TGCGCCTGGGAATACCATTCTGCGCAGGACCGACGTTTTCATGCCCAGCCGGTGGCCTGTAGCGATTGCGGCCCACAGTT GTTTAGCTGTCTGGCGCAAGGGCAGCCACAGCATCAGGGGGATGAAGCGTTGCAACAGGCCGTTGCTGCGTTGGCTGCCG GGCAGATTGTGGCGATCAAAGGCCTGGGCGGTTTTCACCTGGCCTGCGACGCCACCAACACTCAGGCCGTCGAACGGCTG CGCCTGCGTAAACGGCGGCCGGGCAAACCACTGGCGGTGATGCTGCCGGATGCCGGCTGGCTGGTACGCTGCGTAAGTGG CGTTAGCCTGGCGCAATTACAGGCATTGTTAACTTCACCCGCCGCGCCTGTGGTGCTGGTCCCTCAATCCCCTTACTCGC CGTTATCTGCCGCCGTGGCTCCAGGGTTGGATGAAGTCGGCCTGATGTTGCCTGCCAACCCGATTCAACATTTATTGATG CAGGCGATACAGCGCCCCCTGGTGATGACCTCAGGCAATGCCGCTGGCCGTGCTCCGGCGTTAACCAATGAGCAGGCATT GGCTGATTTGGTCGACATTGCCGATCTGTGGCTGATGCACGATCGCGAGATCTTGCAACGCGCAGACGACTCGCTGGTGC GTTTGCTCCCCAAAGGCCATGAAATGCTGCGCCGGGCGCGCGGGTTCGTTCCCGACGCCCTGCCGCTGCCGCCCGGTTTC CCTGCTCAGCAGGCCTTGTTGGCGGTGGGCGGCGATCGCAAAAATACCTTTTGCCTGGTTCAGGGAAATCAGGCCCTGCT CGGCCCGCACTTTGGCGATTTGGAGCAAGAGGATATTCAGCAACAGTGGCAACAGGCCATCAGGCACTTCACCGGGTTAT ACCATTGCCAGCCGCAGCGGCTGGCCAGCGATGCCCATCCCGGTTATGTCAGTCACCAATGGGCGGCCCGGCAGTCACTG CCGGTGACCCCGGTGCTGCATCATCATGCGCATCTGGCCGCTTGCCTGGCCGAGCACCGTTGGCCACTGGAAGGCGGTGC CGTGATCGGCCTGGCGCTGGATGGTCTCGGTTATGGTCAGGGCGGCGCCCTGTGGGGCGGCGAGTGTCTGCTGGTTGATT ACCGCCGCTGTCGTCATCTGGGGGGATTGCCCGCGGTGGCGCTGCCAGGTGGCGATCTTGCGGCTCAGCAACCCTGGCGC AATCAGTTGGCGCACTTCGCGCGCTTCGTACCGGACTGGCAAAGCTACCCTCAGGCCGAACGGCTGTTGGCTTCCCCATG GCGACCGTTGCTGCAAGCGATTAAGGCCGGTATTAATGCCCCGCTGGCCTCCTCCTGTGGCCGCTTGTTTGATGCTGCCG CCGCCACCCTGGGCTGTGCCCCGGCACAACAAAGTTGGGAAGGCGAAGCGGCCAGCCGGTTTGAAGCGCTGGCGCACCAA AGTGGGCCTTGCCCACACCCGGTGACATTGTCACTGACAGACGAGCAATTTGATCTTGCCGCGTTCTGGCAACGCTGGCT GGCCTGGCAAGCGCCCGCCCCGCAACAGGCCTGGGCCTTTCACGATGCGCTGGCGCAGGGTTTTGCCAGTCTGGCCAAGC ATTTTGCCCTGCAGTATGGCATTGGCCATGTAGCGTTGAGCGGCGGTGTGCTGCATAACCGCCTGCTGCGTCAACGCCTG CAGCACCATCTGGCCCCTTTGCAGATACTGCTGCCTCAGCAACTGCCTGCAGGTGATGGCGGGCTGGCGCTTGGCCAGGC GCTGGTCGCTTGCGCCCAACATTCTCCGGCTTCTTCTTCCACCTTTGACAGGACCTGA
Upstream 100 bases:
>100_bases AAGTTGCACTGTCACTTTGTAGAGGGGCGAAGGAATTCGCCCCGATTCACCCGGGCGCAGCATACAGCGCCCCTACAAAA ACCACAGAGAGTAATAAAAA
Downstream 100 bases:
>100_bases CATGGTAAACCGCGAGTTTTTCCACACCCATACCCGCGCCTTTTGGCTATTACTGGCGCTGGTGGCGCTAAACCTGTTGG CCTGGGGAGCGGCTTTTGCC
Product: (NiFe) hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 765; Mature: 764
Protein sequence:
>765_residues MSHSGLLLRISGKVQGVGFRPFVWQLAEQLNLRGEVWNDSAGVEIRLVQPVDLEILLHVLHHQAPPLAQIDRIQQRSFTW LQAPTDFSIRPSQSGAMATQIVPDAATCPQCLREMNDPQDRRYRYPFINCTHCGPRFTIIRAMPYDRPATSMAPFTLCPH CAWEYHSAQDRRFHAQPVACSDCGPQLFSCLAQGQPQHQGDEALQQAVAALAAGQIVAIKGLGGFHLACDATNTQAVERL RLRKRRPGKPLAVMLPDAGWLVRCVSGVSLAQLQALLTSPAAPVVLVPQSPYSPLSAAVAPGLDEVGLMLPANPIQHLLM QAIQRPLVMTSGNAAGRAPALTNEQALADLVDIADLWLMHDREILQRADDSLVRLLPKGHEMLRRARGFVPDALPLPPGF PAQQALLAVGGDRKNTFCLVQGNQALLGPHFGDLEQEDIQQQWQQAIRHFTGLYHCQPQRLASDAHPGYVSHQWAARQSL PVTPVLHHHAHLAACLAEHRWPLEGGAVIGLALDGLGYGQGGALWGGECLLVDYRRCRHLGGLPAVALPGGDLAAQQPWR NQLAHFARFVPDWQSYPQAERLLASPWRPLLQAIKAGINAPLASSCGRLFDAAAATLGCAPAQQSWEGEAASRFEALAHQ SGPCPHPVTLSLTDEQFDLAAFWQRWLAWQAPAPQQAWAFHDALAQGFASLAKHFALQYGIGHVALSGGVLHNRLLRQRL QHHLAPLQILLPQQLPAGDGGLALGQALVACAQHSPASSSTFDRT
Sequences:
>Translated_765_residues MSHSGLLLRISGKVQGVGFRPFVWQLAEQLNLRGEVWNDSAGVEIRLVQPVDLEILLHVLHHQAPPLAQIDRIQQRSFTW LQAPTDFSIRPSQSGAMATQIVPDAATCPQCLREMNDPQDRRYRYPFINCTHCGPRFTIIRAMPYDRPATSMAPFTLCPH CAWEYHSAQDRRFHAQPVACSDCGPQLFSCLAQGQPQHQGDEALQQAVAALAAGQIVAIKGLGGFHLACDATNTQAVERL RLRKRRPGKPLAVMLPDAGWLVRCVSGVSLAQLQALLTSPAAPVVLVPQSPYSPLSAAVAPGLDEVGLMLPANPIQHLLM QAIQRPLVMTSGNAAGRAPALTNEQALADLVDIADLWLMHDREILQRADDSLVRLLPKGHEMLRRARGFVPDALPLPPGF PAQQALLAVGGDRKNTFCLVQGNQALLGPHFGDLEQEDIQQQWQQAIRHFTGLYHCQPQRLASDAHPGYVSHQWAARQSL PVTPVLHHHAHLAACLAEHRWPLEGGAVIGLALDGLGYGQGGALWGGECLLVDYRRCRHLGGLPAVALPGGDLAAQQPWR NQLAHFARFVPDWQSYPQAERLLASPWRPLLQAIKAGINAPLASSCGRLFDAAAATLGCAPAQQSWEGEAASRFEALAHQ SGPCPHPVTLSLTDEQFDLAAFWQRWLAWQAPAPQQAWAFHDALAQGFASLAKHFALQYGIGHVALSGGVLHNRLLRQRL QHHLAPLQILLPQQLPAGDGGLALGQALVACAQHSPASSSTFDRT >Mature_764_residues SHSGLLLRISGKVQGVGFRPFVWQLAEQLNLRGEVWNDSAGVEIRLVQPVDLEILLHVLHHQAPPLAQIDRIQQRSFTWL QAPTDFSIRPSQSGAMATQIVPDAATCPQCLREMNDPQDRRYRYPFINCTHCGPRFTIIRAMPYDRPATSMAPFTLCPHC AWEYHSAQDRRFHAQPVACSDCGPQLFSCLAQGQPQHQGDEALQQAVAALAAGQIVAIKGLGGFHLACDATNTQAVERLR LRKRRPGKPLAVMLPDAGWLVRCVSGVSLAQLQALLTSPAAPVVLVPQSPYSPLSAAVAPGLDEVGLMLPANPIQHLLMQ AIQRPLVMTSGNAAGRAPALTNEQALADLVDIADLWLMHDREILQRADDSLVRLLPKGHEMLRRARGFVPDALPLPPGFP AQQALLAVGGDRKNTFCLVQGNQALLGPHFGDLEQEDIQQQWQQAIRHFTGLYHCQPQRLASDAHPGYVSHQWAARQSLP VTPVLHHHAHLAACLAEHRWPLEGGAVIGLALDGLGYGQGGALWGGECLLVDYRRCRHLGGLPAVALPGGDLAAQQPWRN QLAHFARFVPDWQSYPQAERLLASPWRPLLQAIKAGINAPLASSCGRLFDAAAATLGCAPAQQSWEGEAASRFEALAHQS GPCPHPVTLSLTDEQFDLAAFWQRWLAWQAPAPQQAWAFHDALAQGFASLAKHFALQYGIGHVALSGGVLHNRLLRQRLQ HHLAPLQILLPQQLPAGDGGLALGQALVACAQHSPASSSTFDRT
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=752, Percent_Identity=61.436170212766, Blast_Score=843, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 83251; Mature: 83120
Theoretical pI: Translated: 7.61; Mature: 7.61
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSHSGLLLRISGKVQGVGFRPFVWQLAEQLNLRGEVWNDSAGVEIRLVQPVDLEILLHVL CCCCCEEEEECCCEECCCCCHHHHHHHHHHCCCCEECCCCCCEEEEEECCCCHHHHHHHH HHQAPPLAQIDRIQQRSFTWLQAPTDFSIRPSQSGAMATQIVPDAATCPQCLREMNDPQD HCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCHH RRYRYPFINCTHCGPRFTIIRAMPYDRPATSMAPFTLCPHCAWEYHSAQDRRFHAQPVAC HCEECCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC SDCGPQLFSCLAQGQPQHQGDEALQQAVAALAAGQIVAIKGLGGFHLACDATNTQAVERL CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHH RLRKRRPGKPLAVMLPDAGWLVRCVSGVSLAQLQALLTSPAAPVVLVPQSPYSPLSAAVA HHHHCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHC PGLDEVGLMLPANPIQHLLMQAIQRPLVMTSGNAAGRAPALTNEQALADLVDIADLWLMH CCHHHCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH DREILQRADDSLVRLLPKGHEMLRRARGFVPDALPLPPGFPAQQALLAVGGDRKNTFCLV HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEE QGNQALLGPHFGDLEQEDIQQQWQQAIRHFTGLYHCQPQRLASDAHPGYVSHQWAARQSL ECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHCCC PVTPVLHHHAHLAACLAEHRWPLEGGAVIGLALDGLGYGQGGALWGGECLLVDYRRCRHL CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHC GGLPAVALPGGDLAAQQPWRNQLAHFARFVPDWQSYPQAERLLASPWRPLLQAIKAGINA CCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCHHCCCHHHHHHHCCHHHHHHHHHHCCCC PLASSCGRLFDAAAATLGCAPAQQSWEGEAASRFEALAHQSGPCPHPVTLSLTDEQFDLA CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHH AFWQRWLAWQAPAPQQAWAFHDALAQGFASLAKHFALQYGIGHVALSGGVLHNRLLRQRL HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHH QHHLAPLQILLPQQLPAGDGGLALGQALVACAQHSPASSSTFDRT HHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure SHSGLLLRISGKVQGVGFRPFVWQLAEQLNLRGEVWNDSAGVEIRLVQPVDLEILLHVL CCCCEEEEECCCEECCCCCHHHHHHHHHHCCCCEECCCCCCEEEEEECCCCHHHHHHHH HHQAPPLAQIDRIQQRSFTWLQAPTDFSIRPSQSGAMATQIVPDAATCPQCLREMNDPQD HCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCHH RRYRYPFINCTHCGPRFTIIRAMPYDRPATSMAPFTLCPHCAWEYHSAQDRRFHAQPVAC HCEECCEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCC SDCGPQLFSCLAQGQPQHQGDEALQQAVAALAAGQIVAIKGLGGFHLACDATNTQAVERL CCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCHHHHHHH RLRKRRPGKPLAVMLPDAGWLVRCVSGVSLAQLQALLTSPAAPVVLVPQSPYSPLSAAVA HHHHCCCCCCEEEEECCCCHHHHHHCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHC PGLDEVGLMLPANPIQHLLMQAIQRPLVMTSGNAAGRAPALTNEQALADLVDIADLWLMH CCHHHCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH DREILQRADDSLVRLLPKGHEMLRRARGFVPDALPLPPGFPAQQALLAVGGDRKNTFCLV HHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEEEE QGNQALLGPHFGDLEQEDIQQQWQQAIRHFTGLYHCQPQRLASDAHPGYVSHQWAARQSL ECCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCHHHHHCCC PVTPVLHHHAHLAACLAEHRWPLEGGAVIGLALDGLGYGQGGALWGGECLLVDYRRCRHL CCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEHHHHHHC GGLPAVALPGGDLAAQQPWRNQLAHFARFVPDWQSYPQAERLLASPWRPLLQAIKAGINA CCCCEEEECCCCCCCCCHHHHHHHHHHHHCCCHHCCCHHHHHHHCCHHHHHHHHHHCCCC PLASSCGRLFDAAAATLGCAPAQQSWEGEAASRFEALAHQSGPCPHPVTLSLTDEQFDLA CHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHH AFWQRWLAWQAPAPQQAWAFHDALAQGFASLAKHFALQYGIGHVALSGGVLHNRLLRQRL HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHH QHHLAPLQILLPQQLPAGDGGLALGQALVACAQHSPASSSTFDRT HHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 8661925; 12206761 [H]