| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is fdhF [H]
Identifier: 157370664
GI number: 157370664
Start: 2657681
End: 2659837
Strand: Reverse
Name: fdhF [H]
Synonym: Spro_2424
Alternate gene names: 157370664
Gene position: 2659837-2657681 (Counterclockwise)
Preceding gene: 157370665
Following gene: 157370663
Centisome position: 48.81
GC content: 58.46
Gene sequence:
>2157_bases ATGAAAAAAATCACAACCGTCTGCCCATACTGCGGTGCAGGCTGCAAAATGAAACTGGTGGTCGACAACGGAAAAATCAT CCGCGCCGAGGCGGCTGACGGCGTGACCAATCAGGGCGAACTGTGCCTGAAAGGCTATTACGGCTGGGACTTTCTCAACG ATACCAAACTGCTGACCCCACGTCTGAGCCAGCCGCTGATCCGCCGTGAAAAAGGCGGCAAGTTTGAGGCCGTCAGTTGG GATGAGGCCATTAGCTACACCGCACAGCGGCTACAGCAGATCAAGGATAAGCACGGCGCCAGCGCCATCATGCACACCGG CTCTTCACGCGGTACCGGCAATGAAACCAACTACGTGATGCAGAAGTTTGCCCGTGCGGTCGTCGGCACCAACAACGTCG ACTGCTGCGCCCGCGTCTGTCATGGCCCGTCGGTAGCGGGTTTGCAGGCCACGCTGGGCAACGGCGCGATGAGCAACTCG ATTGGCGATATCGAAAACTCCAAATGCCTGCTGGTCATCGGTTACAACTGTGCCGATTCGCATCCTATTGTGGCTCGCCG GGTGCTGAAGGCCAAAGAGAAAGGCGCGCAAATTATCGTCTGCGACCCACGCCGTATCGAAACCGCGCGCATTGCCGACC AGCATTTGCAGATCAAAAACGGCTGTAATATGGCGCTGGTGAATGCCTTCGCCTATACGCTGATTGAAGAAAATCTGTAT GACCGCGACTACGTGGCGAAATACACCGAAGGTTTCGAGGCTTACCGCCAGCAGTTAGCGGATTACGCACCGGAAGCGGT AGAACAGCTGACCGGCGTCAGCGCCCAGCAAATTCGCCAGGCGATGCGCACCTACGCCAGTGCCCCTTCCGCCACCATCA TGTGGGGCATGGGAGTCACCCAGTTCGGTCAGGCGGTCGACGTGGTCAAAGGGCTCGCCAGTCTGGCCTTGCTGACCGGT AATCTGGGCCGGCCCAACGTGGGGGTTGGCCCGGTGCGTGGGCAGAACAACGTTCAGGGTGCCTGCGACATGGGCGTGCT GCCCAATGAGTTCCCAGGTTATCAGGCGGTCACCGACGCCGCGGTACGCGCCAAGTTCGCCGCCGCCTGGGGCATTGACG CCGCCAGGATGGACCCGGAAGTCGGTTACCGCATCACCGAGATCCCGCATTTGGTGCACGAAGGCAAAGTGAAGGCCTAC TACATCATGGGGGAAGATCCGTTACAGACCGAAGCCGATCTGAGCCTGGTGCGCGGCGCGTTCGAAGCGCTGGAGTTTGT GGTAGTGCAAGACATCTTTATGACCAAAACCGCTGAACAGGCGGACGTGATCCTGCCTGCCACCTCCTGGGGTGAGCATG GCGGCGTGTTCTCCTGTGCCGACCGCGGCTTCCAGCGTTTCGAGAAGGCCATTGAACCGCAGTACAACGTCAAACGCGAC TGGGAGATCATCAGCCTGCTGGCCACCGAGATGGGCTATCCGATGCATTACGACGATAACCAGCAAATCTGGGATGAAAT GCGTGAGCTTTGCCCGCTGTTTTATGGGGCCACCTACGAAAAAATGGGTGAACTGGGCCATGTGCAATGGCCTTGTACCA CGCTGGAAAGTCAGGGCACTCCTTACCTGTATCAGGGCAACCAGTTCACCACCCCGACCGGTAAAGGCCAGCTGTTCGCC ACCACCTGGCGTGCTCCGGCGGAAGTGCCGGATGCAGATTATCCGCTGGTGCTCTGTACCGTGCGTGAAGTCGGCCACTA CTCCTGCCGCTCGATGACCGGTAACTGTGCCGCGCTGCAAACCCTGGCGGATGAACCCGGCTTTGTGCAGATCAATCCAC AGGACGCCGAAGCGCTGGGTATTGCCGATCAGCAACTGGTGTGGGTCAGCTCGCGCCGTGGCAAGGTGATCAGCCGTGCC AACTATAACGAGCGTATTAACCTGGGCGCGGTGTATATGACCTACCAGTGGTGGATCGGTGCCTGTAACGAGCTGACTCA GGAGAATTTGGACCCGATCTCCAAAACGCCGGAAACCAAATATTGCGCGGTAAAACTGGCGGCAATTAGCGATCAGCACT GGGCGGAAAACTACGCGCAACAGAGCTACAGCGATATGAAGGCCCGCCTGCGTCGCGCAGCAGAAGATGTGATGTAA
Upstream 100 bases:
>100_bases TGCACTGTGTGGATCGCAACATGCTGCAAGAAATGAACGCCGAGAAACGCCGTCGCGCCGCGCTCGACACCCTGTCGTCA CTGTTTTAGGAACTGAACCG
Downstream 100 bases:
>100_bases AGTTGCACTGTCACTTTGTAGAGGGGCGAAGGAATTCGCCCCGATTCACCCGGGCGCAGCATACAGCGCCCCTACAAAAA CCACAGAGAGTAATAAAAAG
Product: formate dehydrogenase subunit alpha
Products: NA
Alternate protein names: Formate dehydrogenase-H subunit alpha; FDH-H; Formate-hydrogen-lyase-linked, selenocysteine-containing polypeptide [H]
Number of amino acids: Translated: 718; Mature: 718
Protein sequence:
>718_residues MKKITTVCPYCGAGCKMKLVVDNGKIIRAEAADGVTNQGELCLKGYYGWDFLNDTKLLTPRLSQPLIRREKGGKFEAVSW DEAISYTAQRLQQIKDKHGASAIMHTGSSRGTGNETNYVMQKFARAVVGTNNVDCCARVCHGPSVAGLQATLGNGAMSNS IGDIENSKCLLVIGYNCADSHPIVARRVLKAKEKGAQIIVCDPRRIETARIADQHLQIKNGCNMALVNAFAYTLIEENLY DRDYVAKYTEGFEAYRQQLADYAPEAVEQLTGVSAQQIRQAMRTYASAPSATIMWGMGVTQFGQAVDVVKGLASLALLTG NLGRPNVGVGPVRGQNNVQGACDMGVLPNEFPGYQAVTDAAVRAKFAAAWGIDAARMDPEVGYRITEIPHLVHEGKVKAY YIMGEDPLQTEADLSLVRGAFEALEFVVVQDIFMTKTAEQADVILPATSWGEHGGVFSCADRGFQRFEKAIEPQYNVKRD WEIISLLATEMGYPMHYDDNQQIWDEMRELCPLFYGATYEKMGELGHVQWPCTTLESQGTPYLYQGNQFTTPTGKGQLFA TTWRAPAEVPDADYPLVLCTVREVGHYSCRSMTGNCAALQTLADEPGFVQINPQDAEALGIADQQLVWVSSRRGKVISRA NYNERINLGAVYMTYQWWIGACNELTQENLDPISKTPETKYCAVKLAAISDQHWAENYAQQSYSDMKARLRRAAEDVM
Sequences:
>Translated_718_residues MKKITTVCPYCGAGCKMKLVVDNGKIIRAEAADGVTNQGELCLKGYYGWDFLNDTKLLTPRLSQPLIRREKGGKFEAVSW DEAISYTAQRLQQIKDKHGASAIMHTGSSRGTGNETNYVMQKFARAVVGTNNVDCCARVCHGPSVAGLQATLGNGAMSNS IGDIENSKCLLVIGYNCADSHPIVARRVLKAKEKGAQIIVCDPRRIETARIADQHLQIKNGCNMALVNAFAYTLIEENLY DRDYVAKYTEGFEAYRQQLADYAPEAVEQLTGVSAQQIRQAMRTYASAPSATIMWGMGVTQFGQAVDVVKGLASLALLTG NLGRPNVGVGPVRGQNNVQGACDMGVLPNEFPGYQAVTDAAVRAKFAAAWGIDAARMDPEVGYRITEIPHLVHEGKVKAY YIMGEDPLQTEADLSLVRGAFEALEFVVVQDIFMTKTAEQADVILPATSWGEHGGVFSCADRGFQRFEKAIEPQYNVKRD WEIISLLATEMGYPMHYDDNQQIWDEMRELCPLFYGATYEKMGELGHVQWPCTTLESQGTPYLYQGNQFTTPTGKGQLFA TTWRAPAEVPDADYPLVLCTVREVGHYSCRSMTGNCAALQTLADEPGFVQINPQDAEALGIADQQLVWVSSRRGKVISRA NYNERINLGAVYMTYQWWIGACNELTQENLDPISKTPETKYCAVKLAAISDQHWAENYAQQSYSDMKARLRRAAEDVM >Mature_718_residues MKKITTVCPYCGAGCKMKLVVDNGKIIRAEAADGVTNQGELCLKGYYGWDFLNDTKLLTPRLSQPLIRREKGGKFEAVSW DEAISYTAQRLQQIKDKHGASAIMHTGSSRGTGNETNYVMQKFARAVVGTNNVDCCARVCHGPSVAGLQATLGNGAMSNS IGDIENSKCLLVIGYNCADSHPIVARRVLKAKEKGAQIIVCDPRRIETARIADQHLQIKNGCNMALVNAFAYTLIEENLY DRDYVAKYTEGFEAYRQQLADYAPEAVEQLTGVSAQQIRQAMRTYASAPSATIMWGMGVTQFGQAVDVVKGLASLALLTG NLGRPNVGVGPVRGQNNVQGACDMGVLPNEFPGYQAVTDAAVRAKFAAAWGIDAARMDPEVGYRITEIPHLVHEGKVKAY YIMGEDPLQTEADLSLVRGAFEALEFVVVQDIFMTKTAEQADVILPATSWGEHGGVFSCADRGFQRFEKAIEPQYNVKRD WEIISLLATEMGYPMHYDDNQQIWDEMRELCPLFYGATYEKMGELGHVQWPCTTLESQGTPYLYQGNQFTTPTGKGQLFA TTWRAPAEVPDADYPLVLCTVREVGHYSCRSMTGNCAALQTLADEPGFVQINPQDAEALGIADQQLVWVSSRRGKVISRA NYNERINLGAVYMTYQWWIGACNELTQENLDPISKTPETKYCAVKLAAISDQHWAENYAQQSYSDMKARLRRAAEDVM
Specific function: Decomposes formic acid to hydrogen and carbon dioxide under anaerobic conditions in the absence of exogenous electron acceptors [H]
COG id: COG0243
COG function: function code C; Anaerobic dehydrogenases, typically selenocysteine-containing
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the prokaryotic molybdopterin-containing oxidoreductase family [H]
Homologues:
Organism=Escherichia coli, GI3868721, Length=716, Percent_Identity=66.4804469273743, Blast_Score=1025, Evalue=0.0, Organism=Escherichia coli, GI1788534, Length=789, Percent_Identity=25.3485424588086, Blast_Score=229, Evalue=6e-61, Organism=Escherichia coli, GI3868719, Length=616, Percent_Identity=26.7857142857143, Blast_Score=188, Evalue=9e-49, Organism=Escherichia coli, GI3868720, Length=618, Percent_Identity=26.2135922330097, Blast_Score=188, Evalue=1e-48, Organism=Escherichia coli, GI87081797, Length=773, Percent_Identity=25.3557567917206, Blast_Score=140, Evalue=3e-34, Organism=Escherichia coli, GI1787778, Length=314, Percent_Identity=28.6624203821656, Blast_Score=136, Evalue=5e-33, Organism=Escherichia coli, GI171474008, Length=763, Percent_Identity=25.1638269986894, Blast_Score=127, Evalue=3e-30, Organism=Escherichia coli, GI1787870, Length=781, Percent_Identity=23.6875800256082, Blast_Score=118, Evalue=2e-27, Organism=Escherichia coli, GI87081994, Length=730, Percent_Identity=23.1506849315068, Blast_Score=103, Evalue=3e-23, Organism=Escherichia coli, GI1787231, Length=647, Percent_Identity=24.1112828438949, Blast_Score=101, Evalue=1e-22, Organism=Escherichia coli, GI145693196, Length=450, Percent_Identity=22.4444444444444, Blast_Score=89, Evalue=9e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009010 - InterPro: IPR006478 - InterPro: IPR006657 - InterPro: IPR006656 - InterPro: IPR006963 - InterPro: IPR006655 [H]
Pfam domain/function: PF04879 Molybdop_Fe4S4; PF00384 Molybdopterin; PF01568 Molydop_binding [H]
EC number: =1.2.1.2 [H]
Molecular weight: Translated: 79267; Mature: 79267
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: PS00490 MOLYBDOPTERIN_PROK_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKITTVCPYCGAGCKMKLVVDNGKIIRAEAADGVTNQGELCLKGYYGWDFLNDTKLLTP CCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEECC RLSQPLIRREKGGKFEAVSWDEAISYTAQRLQQIKDKHGASAIMHTGSSRGTGNETNYVM HHCCHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH QKFARAVVGTNNVDCCARVCHGPSVAGLQATLGNGAMSNSIGDIENSKCLLVIGYNCADS HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHECCCCCCCCCCCCCCCCCEEEEEECCCCCC HPIVARRVLKAKEKGAQIIVCDPRRIETARIADQHLQIKNGCNMALVNAFAYTLIEENLY CHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC DRDYVAKYTEGFEAYRQQLADYAPEAVEQLTGVSAQQIRQAMRTYASAPSATIMWGMGVT CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCHH QFGQAVDVVKGLASLALLTGNLGRPNVGVGPVRGQNNVQGACDMGVLPNEFPGYQAVTDA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH AVRAKFAAAWGIDAARMDPEVGYRITEIPHLVHEGKVKAYYIMGEDPLQTEADLSLVRGA HHHHHHHHHHCCCHHHCCHHHCEEHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH FEALEFVVVQDIFMTKTAEQADVILPATSWGEHGGVFSCADRGFQRFEKAIEPQYNVKRD HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCC WEIISLLATEMGYPMHYDDNQQIWDEMRELCPLFYGATYEKMGELGHVQWPCTTLESQGT HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHCCCCC PYLYQGNQFTTPTGKGQLFATTWRAPAEVPDADYPLVLCTVREVGHYSCRSMTGNCAALQ CEEEECCEEECCCCCCCEEEEECCCCCCCCCCCCCEEEEEEHHHCCHHHHCCCCCHHHHH TLADEPGFVQINPQDAEALGIADQQLVWVSSRRGKVISRANYNERINLGAVYMTYQWWIG HHCCCCCEEEECCCCCHHHCCCCCEEEEEECCCCCEEEECCCCCEEECCEEEEEEHHHHH ACNELTQENLDPISKTPETKYCAVKLAAISDQHWAENYAQQSYSDMKARLRRAAEDVM HHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKKITTVCPYCGAGCKMKLVVDNGKIIRAEAADGVTNQGELCLKGYYGWDFLNDTKLLTP CCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCEEECC RLSQPLIRREKGGKFEAVSWDEAISYTAQRLQQIKDKHGASAIMHTGSSRGTGNETNYVM HHCCHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHH QKFARAVVGTNNVDCCARVCHGPSVAGLQATLGNGAMSNSIGDIENSKCLLVIGYNCADS HHHHHHHHCCCCHHHHHHHHCCCCCCCHHHECCCCCCCCCCCCCCCCCEEEEEECCCCCC HPIVARRVLKAKEKGAQIIVCDPRRIETARIADQHLQIKNGCNMALVNAFAYTLIEENLY CHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCC DRDYVAKYTEGFEAYRQQLADYAPEAVEQLTGVSAQQIRQAMRTYASAPSATIMWGMGVT CHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCHH QFGQAVDVVKGLASLALLTGNLGRPNVGVGPVRGQNNVQGACDMGVLPNEFPGYQAVTDA HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH AVRAKFAAAWGIDAARMDPEVGYRITEIPHLVHEGKVKAYYIMGEDPLQTEADLSLVRGA HHHHHHHHHHCCCHHHCCHHHCEEHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHH FEALEFVVVQDIFMTKTAEQADVILPATSWGEHGGVFSCADRGFQRFEKAIEPQYNVKRD HHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCC WEIISLLATEMGYPMHYDDNQQIWDEMRELCPLFYGATYEKMGELGHVQWPCTTLESQGT HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCHHHCCCCC PYLYQGNQFTTPTGKGQLFATTWRAPAEVPDADYPLVLCTVREVGHYSCRSMTGNCAALQ CEEEECCEEECCCCCCCEEEEECCCCCCCCCCCCCEEEEEEHHHCCHHHHCCCCCHHHHH TLADEPGFVQINPQDAEALGIADQQLVWVSSRRGKVISRANYNERINLGAVYMTYQWWIG HHCCCCCEEEECCCCCHHHCCCCCEEEEEECCCCCEEEECCCCCEEECCEEEEEEHHHHH ACNELTQENLDPISKTPETKYCAVKLAAISDQHWAENYAQQSYSDMKARLRRAAEDVM HHHHHHHHCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2941757; 8265357; 9278503; 2211698; 9036855 [H]