| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is yhcD [H]
Identifier: 157370646
GI number: 157370646
Start: 2627530
End: 2629968
Strand: Reverse
Name: yhcD [H]
Synonym: Spro_2406
Alternate gene names: 157370646
Gene position: 2629968-2627530 (Counterclockwise)
Preceding gene: 157370647
Following gene: 157370645
Centisome position: 48.27
GC content: 63.88
Gene sequence:
>2439_bases GTGAGGAGTCTGTTCTGCTTTCCCCCCGCTCGCCCGCTGAGCTGGCAGGCACTGGCGATAAGAGTAGCCCTGGCACCTCT GTTCCTGGTGTCGCCGGCCAACGCAGAGGGTTCCCCTTCTCGGCCGGAAGAAACCCTGTTTGACCCGGTCATGCTGCAGT CCCGGGGTATCGACCGCACCGTGGCGGACAGTTTCCGTCACGGGCCGCGCTTTTTACCCGGCGAAAATGCGCTGATGCTA AACGTTAACGGACGCGGCCGGGGGCGCATCACCGCCCGCTTTAACGAGCAGGGGCAACTTTGTGCCGACGCCGCCTTCCA AAAACAGGCCGGTCTGGAGACGCCGCCGGGCTTTACCGGCCGGGAACCCTGTTTTGACCTGCGCAGCGCCTGGCCACAAA CCGAACTGCATCTGGACCCCGCTGAACGTCGGGCAGATCTGGTGGTACCTGCGCAGGCGGTTTCCGCCCCTGGCTCGGCC GAGGGCAATTGGCAGCACGGCGGCATCGCGGGCCTGTTCAACTACGATGCGCAATACATGGACAGCGCCGGGAATAGCGG TGGGGTCAGTTTTGTCCAACTGGACAGTGAGGCCGGGTTCAACGCCGGGGACTGGATCGTGCGTAGCCGCCAGACCCTCT CGCGCTTTGATGGCGAAGATAGCCTGCAACATCAGGCTGCCTATGCCCAGCGCAGCTTTGCCGGTATTAAGAAGGTGTTT CAGACCGGGCAAATTAGCCTGGGCAACTCGCTGTTCGGTACCGGGCAGGTGATTGGTGCCCAGCTGTTTCCGGAAACCGC CCTGACCGGCAATTCGGGCGGAGCCGGTCTGGTGGAAGGGATTGCCGACACTCAGTCGGTGGTGGAAGTCCGCCAGTCCG GCGTGCTGCTTTACAGCACCACCGTCCCCGCCGGGCCATTCCGCCTGCAAGGGTTCTCGCTGCTCAATACCCGTAGCGAT CTGGCGGTCAGCCTGAGCGGCAGCAACGGCGAAAAACGCCAGTTTACCGTCCCGGCCAGCGCACTGCTGCTCAACGGCAA CAGCGTCGCACCCGGTCTGTCCGTCGGCGTGGGCAAGATGGATCAACAGGGCAGCAGCGAAGCGCCCTGGCTGGGCACCC TTGCCAGCGGCTGGGCACTGACGCCGCGCACCACGCTTAACACCGGCCTGCTGGTTTCGGTGCCGTACCGGGCGGTGGCA GCAGCAGTGGACAACCAGCTTCCCGGCGCGGGTCAACTCTCATTGCAGAGCACCGTGGCGCAGGATGAGCGCCATAACAA CACCGGTACGCTGGTTTCGGTTTCGCTCGGTTATCCGCTGACGGAACGGCTGGGGGTCAGCCTCAACAGCCGTCAACAGA CCCGTCAATACCGGGAATTGAGCGATGCCTTGCAGCGGGACACTCAAGATAGTCAGGGTCGTTCCCGCAGCCAGTACGGT GCGGGTATCAGTTGGGGAATGCCGTCAGTCGGTAATTTCGCCCTCTCTTGGGCGCAGGGCACCACCTTTGGCGGCGACGA CACCCGCTACTTGCGCGCCGGCTGGAGCGCTCAGATTGCTCAGGCCTATGTCGGACTAAACCTGGAACGCAATACCGGTA GCGGCGACAACGGCAATGAGGATCGCGCCTACCTGACCGTCAGTATCCCGTTCGGCGCACGCAGCCTCAGCAGTTATATC AATACGGCCCGTCACAACAGCCGTGCCGGGGTGCGCTACAGCGACCGCAGCAGCCAGGACCGGGGCTGGAGCTTATCTAC CGAACATGATACCGGCAGCAGCCGAACCAGCGGTACCGGCACCCTGGACTGGGTCACGCCGGTCAGCCAGCTCAGCGGCA GCCTGACCCGTGACTCGAACGACTACACCAGTTGGAATGTCCGGGCATCCGGCGGCGTGGTGGCACACGGCGGCGGGGTC ACGCTCACGCCGTACTCCGTCGGGGACACTTTTGCCATTGCCCGGGTCGGTCAGGAAGGCGGGATCCGGCTGGAAACACC GGCAGGCCCGACCTGGACCGATGCCCGGGGTTACGCGGTATTGCCGTCGTTGAGTGGCTATCACCGCTCAACCGTTCAGG TCGACACGCGCAGCCTGCCGAAAAATGTGGATATCAGCAACGCCTGGCTGGAGACGGAACTGGCGCGCGGCGCGGTGGGA CGGATGGATTTTGACGTGGTGCGTACCCGCCGGGTCCTGGTCAACGTTCAGGATGCCCAGGGCGCTCCATTGCCCCACGG CGCGGCCGTTTTCAATACCGAGGGGCAATTTGTCACCGTGGTCGGTTCGGCCGGGGCGGTATTCCTGCCGGACGCGGCAC CGGGAATGCAACTGGAGGTGCAGAATGCCGGACGGCCACTGTGTTCGCTGACGCTCTCTCTGCCGGAACAGGCTGACAGC AGCGGTTTATATGAAACCAGCGCGGCAGTTTGCCGCTGA
Upstream 100 bases:
>100_bases GGTACGGAGACGCAGGTGCGCATTGCCCCGGCCACCACCTGGGGGTTCAGCGTCGCCCATTATGATGCGCCTCTGACACC GTTGCCGTGAGGGGAATACC
Downstream 100 bases:
>100_bases ACAAGGAGTGTGAAATGAAAAGATTCATGGCGCTGGCGGGGCTGCTGGCCAGCCTGACGGCGCAAAGTGCCGAGCTGGAA CCTGCGCAACTCATCCCGCA
Product: fimbrial biogenesis outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 812; Mature: 812
Protein sequence:
>812_residues MRSLFCFPPARPLSWQALAIRVALAPLFLVSPANAEGSPSRPEETLFDPVMLQSRGIDRTVADSFRHGPRFLPGENALML NVNGRGRGRITARFNEQGQLCADAAFQKQAGLETPPGFTGREPCFDLRSAWPQTELHLDPAERRADLVVPAQAVSAPGSA EGNWQHGGIAGLFNYDAQYMDSAGNSGGVSFVQLDSEAGFNAGDWIVRSRQTLSRFDGEDSLQHQAAYAQRSFAGIKKVF QTGQISLGNSLFGTGQVIGAQLFPETALTGNSGGAGLVEGIADTQSVVEVRQSGVLLYSTTVPAGPFRLQGFSLLNTRSD LAVSLSGSNGEKRQFTVPASALLLNGNSVAPGLSVGVGKMDQQGSSEAPWLGTLASGWALTPRTTLNTGLLVSVPYRAVA AAVDNQLPGAGQLSLQSTVAQDERHNNTGTLVSVSLGYPLTERLGVSLNSRQQTRQYRELSDALQRDTQDSQGRSRSQYG AGISWGMPSVGNFALSWAQGTTFGGDDTRYLRAGWSAQIAQAYVGLNLERNTGSGDNGNEDRAYLTVSIPFGARSLSSYI NTARHNSRAGVRYSDRSSQDRGWSLSTEHDTGSSRTSGTGTLDWVTPVSQLSGSLTRDSNDYTSWNVRASGGVVAHGGGV TLTPYSVGDTFAIARVGQEGGIRLETPAGPTWTDARGYAVLPSLSGYHRSTVQVDTRSLPKNVDISNAWLETELARGAVG RMDFDVVRTRRVLVNVQDAQGAPLPHGAAVFNTEGQFVTVVGSAGAVFLPDAAPGMQLEVQNAGRPLCSLTLSLPEQADS SGLYETSAAVCR
Sequences:
>Translated_812_residues MRSLFCFPPARPLSWQALAIRVALAPLFLVSPANAEGSPSRPEETLFDPVMLQSRGIDRTVADSFRHGPRFLPGENALML NVNGRGRGRITARFNEQGQLCADAAFQKQAGLETPPGFTGREPCFDLRSAWPQTELHLDPAERRADLVVPAQAVSAPGSA EGNWQHGGIAGLFNYDAQYMDSAGNSGGVSFVQLDSEAGFNAGDWIVRSRQTLSRFDGEDSLQHQAAYAQRSFAGIKKVF QTGQISLGNSLFGTGQVIGAQLFPETALTGNSGGAGLVEGIADTQSVVEVRQSGVLLYSTTVPAGPFRLQGFSLLNTRSD LAVSLSGSNGEKRQFTVPASALLLNGNSVAPGLSVGVGKMDQQGSSEAPWLGTLASGWALTPRTTLNTGLLVSVPYRAVA AAVDNQLPGAGQLSLQSTVAQDERHNNTGTLVSVSLGYPLTERLGVSLNSRQQTRQYRELSDALQRDTQDSQGRSRSQYG AGISWGMPSVGNFALSWAQGTTFGGDDTRYLRAGWSAQIAQAYVGLNLERNTGSGDNGNEDRAYLTVSIPFGARSLSSYI NTARHNSRAGVRYSDRSSQDRGWSLSTEHDTGSSRTSGTGTLDWVTPVSQLSGSLTRDSNDYTSWNVRASGGVVAHGGGV TLTPYSVGDTFAIARVGQEGGIRLETPAGPTWTDARGYAVLPSLSGYHRSTVQVDTRSLPKNVDISNAWLETELARGAVG RMDFDVVRTRRVLVNVQDAQGAPLPHGAAVFNTEGQFVTVVGSAGAVFLPDAAPGMQLEVQNAGRPLCSLTLSLPEQADS SGLYETSAAVCR >Mature_812_residues MRSLFCFPPARPLSWQALAIRVALAPLFLVSPANAEGSPSRPEETLFDPVMLQSRGIDRTVADSFRHGPRFLPGENALML NVNGRGRGRITARFNEQGQLCADAAFQKQAGLETPPGFTGREPCFDLRSAWPQTELHLDPAERRADLVVPAQAVSAPGSA EGNWQHGGIAGLFNYDAQYMDSAGNSGGVSFVQLDSEAGFNAGDWIVRSRQTLSRFDGEDSLQHQAAYAQRSFAGIKKVF QTGQISLGNSLFGTGQVIGAQLFPETALTGNSGGAGLVEGIADTQSVVEVRQSGVLLYSTTVPAGPFRLQGFSLLNTRSD LAVSLSGSNGEKRQFTVPASALLLNGNSVAPGLSVGVGKMDQQGSSEAPWLGTLASGWALTPRTTLNTGLLVSVPYRAVA AAVDNQLPGAGQLSLQSTVAQDERHNNTGTLVSVSLGYPLTERLGVSLNSRQQTRQYRELSDALQRDTQDSQGRSRSQYG AGISWGMPSVGNFALSWAQGTTFGGDDTRYLRAGWSAQIAQAYVGLNLERNTGSGDNGNEDRAYLTVSIPFGARSLSSYI NTARHNSRAGVRYSDRSSQDRGWSLSTEHDTGSSRTSGTGTLDWVTPVSQLSGSLTRDSNDYTSWNVRASGGVVAHGGGV TLTPYSVGDTFAIARVGQEGGIRLETPAGPTWTDARGYAVLPSLSGYHRSTVQVDTRSLPKNVDISNAWLETELARGAVG RMDFDVVRTRRVLVNVQDAQGAPLPHGAAVFNTEGQFVTVVGSAGAVFLPDAAPGMQLEVQNAGRPLCSLTLSLPEQADS SGLYETSAAVCR
Specific function: Involved in the export and assembly of a fimbrial subunit across the outer membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1789610, Length=804, Percent_Identity=32.5870646766169, Blast_Score=424, Evalue=1e-119, Organism=Escherichia coli, GI1789533, Length=835, Percent_Identity=26.9461077844311, Blast_Score=179, Evalue=6e-46, Organism=Escherichia coli, GI1790772, Length=893, Percent_Identity=25.4199328107503, Blast_Score=141, Evalue=2e-34, Organism=Escherichia coli, GI1786744, Length=747, Percent_Identity=24.0963855421687, Blast_Score=140, Evalue=5e-34, Organism=Escherichia coli, GI1786332, Length=714, Percent_Identity=23.8095238095238, Blast_Score=133, Evalue=4e-32, Organism=Escherichia coli, GI1787172, Length=852, Percent_Identity=24.4131455399061, Blast_Score=120, Evalue=3e-28, Organism=Escherichia coli, GI1788427, Length=834, Percent_Identity=21.9424460431655, Blast_Score=116, Evalue=7e-27, Organism=Escherichia coli, GI87081778, Length=726, Percent_Identity=22.7272727272727, Blast_Score=96, Evalue=1e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 86130; Mature: 86130
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRSLFCFPPARPLSWQALAIRVALAPLFLVSPANAEGSPSRPEETLFDPVMLQSRGIDRT CCCEEECCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCHHHHCCHHHHHHCCCCHH VADSFRHGPRFLPGENALMLNVNGRGRGRITARFNEQGQLCADAAFQKQAGLETPPGFTG HHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC REPCFDLRSAWPQTELHLDPAERRADLVVPAQAVSAPGSAEGNWQHGGIAGLFNYDAQYM CCCCHHHHHCCCCCEEECCHHHCCCCEEEEHHHHCCCCCCCCCCCCCCEEEEECCCHHHH DSAGNSGGVSFVQLDSEAGFNAGDWIVRSRQTLSRFDGEDSLQHQAAYAQRSFAGIKKVF HCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH QTGQISLGNSLFGTGQVIGAQLFPETALTGNSGGAGLVEGIADTQSVVEVRQSGVLLYST HCCCEEECCCCCCCCCEEEHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEE TVPAGPFRLQGFSLLNTRSDLAVSLSGSNGEKRQFTVPASALLLNGNSVAPGLSVGVGKM CCCCCCEEECCEEEECCCCCEEEEEECCCCCCEEEECCCEEEEECCCCCCCCCEECCCCC DQQGSSEAPWLGTLASGWALTPRTTLNTGLLVSVPYRAVAAAVDNQLPGAGQLSLQSTVA CCCCCCCCCEEEECCCCEEECCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCEEHHHHHH QDERHNNTGTLVSVSLGYPLTERLGVSLNSRQQTRQYRELSDALQRDTQDSQGRSRSQYG HHHCCCCCCCEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCC AGISWGMPSVGNFALSWAQGTTFGGDDTRYLRAGWSAQIAQAYVGLNLERNTGSGDNGNE CCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHCCEEECCCCCCCCCCC DRAYLTVSIPFGARSLSSYINTARHNSRAGVRYSDRSSQDRGWSLSTEHDTGSSRTSGTG CEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC TLDWVTPVSQLSGSLTRDSNDYTSWNVRASGGVVAHGGGVTLTPYSVGDTFAIARVGQEG EEHHCCCHHHHCCCCCCCCCCCCEEEEEECCCEEEECCCEEEEEECCCCEEEEEEECCCC GIRLETPAGPTWTDARGYAVLPSLSGYHRSTVQVDTRSLPKNVDISNAWLETELARGAVG CEEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEEHHCCCCCCCCCHHHHHHHHHCCCCC RMDFDVVRTRRVLVNVQDAQGAPLPHGAAVFNTEGQFVTVVGSAGAVFLPDAAPGMQLEV CCCHHHHHEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEEECCCEEECCCCCCCCEEEE QNAGRPLCSLTLSLPEQADSSGLYETSAAVCR CCCCCCEEEEEEECCCCCCCCCCEECHHHHCC >Mature Secondary Structure MRSLFCFPPARPLSWQALAIRVALAPLFLVSPANAEGSPSRPEETLFDPVMLQSRGIDRT CCCEEECCCCCCCCHHHHHHHHHHCEEEEEECCCCCCCCCCCHHHHCCHHHHHHCCCCHH VADSFRHGPRFLPGENALMLNVNGRGRGRITARFNEQGQLCADAAFQKQAGLETPPGFTG HHHHHHCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCC REPCFDLRSAWPQTELHLDPAERRADLVVPAQAVSAPGSAEGNWQHGGIAGLFNYDAQYM CCCCHHHHHCCCCCEEECCHHHCCCCEEEEHHHHCCCCCCCCCCCCCCEEEEECCCHHHH DSAGNSGGVSFVQLDSEAGFNAGDWIVRSRQTLSRFDGEDSLQHQAAYAQRSFAGIKKVF HCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH QTGQISLGNSLFGTGQVIGAQLFPETALTGNSGGAGLVEGIADTQSVVEVRQSGVLLYST HCCCEEECCCCCCCCCEEEHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEE TVPAGPFRLQGFSLLNTRSDLAVSLSGSNGEKRQFTVPASALLLNGNSVAPGLSVGVGKM CCCCCCEEECCEEEECCCCCEEEEEECCCCCCEEEECCCEEEEECCCCCCCCCEECCCCC DQQGSSEAPWLGTLASGWALTPRTTLNTGLLVSVPYRAVAAAVDNQLPGAGQLSLQSTVA CCCCCCCCCEEEECCCCEEECCCCCCCCCEEEECCHHHHHHHHHCCCCCCCCEEHHHHHH QDERHNNTGTLVSVSLGYPLTERLGVSLNSRQQTRQYRELSDALQRDTQDSQGRSRSQYG HHHCCCCCCCEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCC AGISWGMPSVGNFALSWAQGTTFGGDDTRYLRAGWSAQIAQAYVGLNLERNTGSGDNGNE CCCCCCCCCCCCEEEEECCCCCCCCCCCEEEECCCHHHHHHHHHCCEEECCCCCCCCCCC DRAYLTVSIPFGARSLSSYINTARHNSRAGVRYSDRSSQDRGWSLSTEHDTGSSRTSGTG CEEEEEEECCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC TLDWVTPVSQLSGSLTRDSNDYTSWNVRASGGVVAHGGGVTLTPYSVGDTFAIARVGQEG EEHHCCCHHHHCCCCCCCCCCCCEEEEEECCCEEEECCCEEEEEECCCCEEEEEEECCCC GIRLETPAGPTWTDARGYAVLPSLSGYHRSTVQVDTRSLPKNVDISNAWLETELARGAVG CEEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEEHHCCCCCCCCCHHHHHHHHHCCCCC RMDFDVVRTRRVLVNVQDAQGAPLPHGAAVFNTEGQFVTVVGSAGAVFLPDAAPGMQLEV CCCHHHHHEEEEEEEEECCCCCCCCCCCEEEECCCCEEEEEECCCEEECCCCCCCCEEEE QNAGRPLCSLTLSLPEQADSSGLYETSAAVCR CCCCCCEEEEEEECCCCCCCCCCEECHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]