Click here to switch to the map view.

The map label for this gene is yhcA [H]

Identifier: 157370647

GI number: 157370647

Start: 2629979

End: 2630683

Strand: Reverse

Name: yhcA [H]

Synonym: Spro_2407

Alternate gene names: 157370647

Gene position: 2630683-2629979 (Counterclockwise)

Preceding gene: 157370648

Following gene: 157370646

Centisome position: 48.28

GC content: 62.98

Gene sequence:

>705_bases
ATGCCACACATTCCTTTTGTTCGTTACGGGGCGCTGGCCCTGTGCCTGTTTTCTGCCCTGGCTCAGGCCAGCGGCGTGGT
GCCGGACAGCTCGGTGGTGATTGTCGAAGCCGCCGACGGCGAAGGCACCATCAATGTCCAAAACACCGATCCCTACCCGG
TGCTGCTGCTGACCACCCTGGTGCCACTGCCTCAGGACAAGACCGCGTTACTGACCGTCACCCCACCGGCCGCCCGGGTT
GAACCTGGCAAGAGCCAGAGCGTGCGCTTTTTGCTGACCGACAAAACGCCGTTAAGCACCGAGCGCCTGATGCGGGTGAT
CTTCGAAGGGGTACCGCCCCAGCAAAAAGATAAAAGTGAAGTCCGCATGACCGTGCGCCAGAACCTGCCGCTGATTATTC
GCCCGGCCGGTCTGGCGCGCGATCTCGCCCCCTGGAAACGGCTGGTCTGGCAGCGCACCGGCAACACACTGAAAGTGAGC
AACCCCTCGCCCTATGTGGTGCGCCTGGGTGAAGGGGTTCAGACCCTGCCGGGCAACGGCGTCTGGACACTGCCGCACAG
CTATGTCCTGCCGGGGCAAATACTCACCCTGACCCAGAACGGGACTAAACCGCTGGGTACGGAGACGCAGGTGCGCATTG
CCCCGGCCACCACCTGGGGGTTCAGCGTCGCCCATTATGATGCGCCTCTGACACCGTTGCCGTGA

Upstream 100 bases:

>100_bases
CGGCCTGAAGCCCCGTCATTGACGGGGCCTACCTACCCCCACAATCCCCTACCGGGCAGGTTACAAGGGTTGCCTGCCCG
GTCCAAGAAAGAGTTAATTT

Downstream 100 bases:

>100_bases
GGGGAATACCGTGAGGAGTCTGTTCTGCTTTCCCCCCGCTCGCCCGCTGAGCTGGCAGGCACTGGCGATAAGAGTAGCCC
TGGCACCTCTGTTCCTGGTG

Product: putative periplasmic chaperone protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 233

Protein sequence:

>234_residues
MPHIPFVRYGALALCLFSALAQASGVVPDSSVVIVEAADGEGTINVQNTDPYPVLLLTTLVPLPQDKTALLTVTPPAARV
EPGKSQSVRFLLTDKTPLSTERLMRVIFEGVPPQQKDKSEVRMTVRQNLPLIIRPAGLARDLAPWKRLVWQRTGNTLKVS
NPSPYVVRLGEGVQTLPGNGVWTLPHSYVLPGQILTLTQNGTKPLGTETQVRIAPATTWGFSVAHYDAPLTPLP

Sequences:

>Translated_234_residues
MPHIPFVRYGALALCLFSALAQASGVVPDSSVVIVEAADGEGTINVQNTDPYPVLLLTTLVPLPQDKTALLTVTPPAARV
EPGKSQSVRFLLTDKTPLSTERLMRVIFEGVPPQQKDKSEVRMTVRQNLPLIIRPAGLARDLAPWKRLVWQRTGNTLKVS
NPSPYVVRLGEGVQTLPGNGVWTLPHSYVLPGQILTLTQNGTKPLGTETQVRIAPATTWGFSVAHYDAPLTPLP
>Mature_233_residues
PHIPFVRYGALALCLFSALAQASGVVPDSSVVIVEAADGEGTINVQNTDPYPVLLLTTLVPLPQDKTALLTVTPPAARVE
PGKSQSVRFLLTDKTPLSTERLMRVIFEGVPPQQKDKSEVRMTVRQNLPLIIRPAGLARDLAPWKRLVWQRTGNTLKVSN
PSPYVVRLGEGVQTLPGNGVWTLPHSYVLPGQILTLTQNGTKPLGTETQVRIAPATTWGFSVAHYDAPLTPLP

Specific function: Could be required for the biogenesis of a putative fimbria [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Ig-like (immunoglobulin-like) domain [H]

Homologues:

Organism=Escherichia coli, GI1789609, Length=227, Percent_Identity=38.3259911894273, Blast_Score=162, Evalue=2e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008962
- InterPro:   IPR016148
- InterPro:   IPR016147 [H]

Pfam domain/function: PF02753 Pili_assembly_C; PF00345 Pili_assembly_N [H]

EC number: NA

Molecular weight: Translated: 25364; Mature: 25233

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPHIPFVRYGALALCLFSALAQASGVVPDSSVVIVEAADGEGTINVQNTDPYPVLLLTTL
CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEECCCCCCCEEEEEHH
VPLPQDKTALLTVTPPAARVEPGKSQSVRFLLTDKTPLSTERLMRVIFEGVPPQQKDKSE
CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHH
VRMTVRQNLPLIIRPAGLARDLAPWKRLVWQRTGNTLKVSNPSPYVVRLGEGVQTLPGNG
HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCEECCCCC
VWTLPHSYVLPGQILTLTQNGTKPLGTETQVRIAPATTWGFSVAHYDAPLTPLP
EEECCCCEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCC
>Mature Secondary Structure 
PHIPFVRYGALALCLFSALAQASGVVPDSSVVIVEAADGEGTINVQNTDPYPVLLLTTL
CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEEECCCCCCCEEEEEHH
VPLPQDKTALLTVTPPAARVEPGKSQSVRFLLTDKTPLSTERLMRVIFEGVPPQQKDKSE
CCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCHHH
VRMTVRQNLPLIIRPAGLARDLAPWKRLVWQRTGNTLKVSNPSPYVVRLGEGVQTLPGNG
HHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEEEECCCCEECCCCC
VWTLPHSYVLPGQILTLTQNGTKPLGTETQVRIAPATTWGFSVAHYDAPLTPLP
EEECCCCEECCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1447980; 9278503 [H]