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The map label for this gene is rnfC

Identifier: 157370479

GI number: 157370479

Start: 2439067

End: 2441178

Strand: Reverse

Name: rnfC

Synonym: Spro_2239

Alternate gene names: 157370479

Gene position: 2441178-2439067 (Counterclockwise)

Preceding gene: 157370480

Following gene: 157370477

Centisome position: 44.8

GC content: 61.22

Gene sequence:

>2112_bases
ATGCTTAATCTGTTCGCCGCCTTCAAAAAAGACCGGATTTGGGATTTCGACGGCGGGATCCATCCGCCGGAAATGAAGAC
CCAGTCCAGCGGTGTCCCGCTGCGTACCGCCCCGCTGCCGGATAAGTTTATTATCCCGTTGCAACAGCATCTGGGGCCGG
AAGGTGAACTGTGCGTCAAGGTCGGCGACACCGTGCTGAAAGGCCAGCCGCTGACCGTCGGCCGGGGCCGTACCGTACCG
GTGCACGCACCAACCTCCGGCACCATCAGCGCCATCACACCGCATATCACCGCTCACCCTTCCGGGTTGGCAGAACTGTG
CGTGATTATTCAACCTGACGGCGAAGACCGCTGGTGCGAGCGTGCGCCGGTAGCCGACTACCGTCAACTGACCGCCAGCG
AGTTGATCCAACGTATTCATCAGGCCGGCATCGCCGGGCTGGGCGGCGCCGGTTTCCCGACCGCCAGCAAGCTGCAGGGC
GGCATGAACGGGGTGGAAACCCTGATCCTCAACGCCGCCGAGTGCGAGCCTTATATCACTGCCGATGACCGCTTGATGCA
GGAACATGCCGATCAGGTGATTGAAGGCACGCAGATCCTGCGCCACCTGCTGCAACCCAAAGTCACGCTGATTGGCATCG
AGGACAATAAGCCCGAAGCGATCGCCGCGTTGAAACTGGCGCTGCGCGGTCAGCCAGGTATTGCCCTGCGGGTGATCCCG
ACCAAATACCCTTCTGGCGGCGCCAAACAGCTCACCAAGATCCTGATTGGCAAGGAAGTGCCGCACGGCAAGCACTCTTC
CGCTATTGGCGTGCTGATGCAGAACGTCGGTACTGCCTTTGCCATTAAACGTGCGATTGTCGACGGCGAGCCGCTGATCG
AACGCGTGGTGACTCTGACCGGTGAAGCTCTAAGCCTGCCGGGCAACCTGTGGGCGCGCATAGGCACACCGGTACAACAC
CTGTTGAAATTTGCCGGTTTCCAGCCTCAGGCTCAGCAAATGGTAGTGATGGGCGGCCCGCTGATGGGCTTTACCCTGCC
CGCGCTCCACGTCCCCATCGTTAAGATAAGCAACTGTATTCTGGCCCCCTCGGTCAGCGAAATGGCACCACAAGAACAGG
AACAGTCCTGTATTCGCTGTGGCCTGTGCGTTGATGCCTGCCCGGCGGGTCTGTTACCGCAGCAACTTTACTGGTTCAGC
CGCGGCGAAGAACACGAAAAGGCCCGCAATCATAATCTGTTCGATTGCATTGAATGTGGTGCCTGCGCGTTTGTCTGCCC
GAGCAATATCCCGCTGGTGCAGTACTACCGCCAGGAAAAGGCCGAGATCAAGGCCATCGATCTGGAAGCGGCACGCACGG
CTGAGGCCAAGGCGCGTTACGAAGCCAAGTTGGCGCGTCTGGAACGTGAAAAACTGGCGCGTGAAGAGCGCCATAAGAAA
GCGGCAGTCAAACTGACCGATGGTGACCAGGATGCGGTTCAGGCGGCCCTGGCGCGAGTTCGCAGTAAAAATGCTGTACC
GGCGACCGGCACCATCAGCGGCGACGCACCGGACAACAGCGAGATGAACGCGGCCCGCGAAGCCCGTAAAGCGCAGGCTC
GTGAACGACGTGCCCAGCAGGAAACCCCTGTCGCACCGGTAACGGCATCGGCTAGCGAAGATGAAGATCCACGCAAGGCC
GCTGTTGCCGCTGCACTGGCACGAGTTAAGGCCAAGAAAGCGGCGCCGCAGGCCACAGCGGTGGAAACTCCGGCCGAATC
GCCGGCAGTGGTGACGGAAGAAGATCCACGCAAGGCCGCGGTTGCCGCTGCGCTGGCGCGAGTTAAGGCCAAGAAAGCGG
CGCAGCAGGCCACAGCGGTGGAAACTCCTGCCGAATCACCCGCAGTGGTGACGGAAGAAGACCCGCGCAAGGCCGCGGTT
GCCGCTGCGCTGGCGCGAGTTAAGGCCAAGAAAGCGGCGCAGCAGGCCACAGCGGTGGAAACTCCTGCCGAATCACCCGC
AGTGGTGACGGAAGAAGACCCGCGCAAGGCCGCGGTCGCGGCAGCCATTGCCCGCGCCAAAGCTAAAAGAGCGGCGCAAA
GTCTGACCACGGCGGATACGGATAAAGAGTGA

Upstream 100 bases:

>100_bases
CCTACCGACTGTATTGAAATGAGACCGGTCGCCACCACTACCGCCAACTGGAAGTGGGATATGAAGACGATACCGGTGCA
AGTGATCCACGTGGAGCAAC

Downstream 100 bases:

>100_bases
CGGTGAGAGGTGCCTTGCAGGGCGCAAGGCACTTTTTAATCGATAGAAATCAGATAGGTATAATCAACGTCAATCTGGCG
CATCTTGGAATCCAGACTCC

Product: RnfABCDGE type electron transport complex subunit C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 703; Mature: 703

Protein sequence:

>703_residues
MLNLFAAFKKDRIWDFDGGIHPPEMKTQSSGVPLRTAPLPDKFIIPLQQHLGPEGELCVKVGDTVLKGQPLTVGRGRTVP
VHAPTSGTISAITPHITAHPSGLAELCVIIQPDGEDRWCERAPVADYRQLTASELIQRIHQAGIAGLGGAGFPTASKLQG
GMNGVETLILNAAECEPYITADDRLMQEHADQVIEGTQILRHLLQPKVTLIGIEDNKPEAIAALKLALRGQPGIALRVIP
TKYPSGGAKQLTKILIGKEVPHGKHSSAIGVLMQNVGTAFAIKRAIVDGEPLIERVVTLTGEALSLPGNLWARIGTPVQH
LLKFAGFQPQAQQMVVMGGPLMGFTLPALHVPIVKISNCILAPSVSEMAPQEQEQSCIRCGLCVDACPAGLLPQQLYWFS
RGEEHEKARNHNLFDCIECGACAFVCPSNIPLVQYYRQEKAEIKAIDLEAARTAEAKARYEAKLARLEREKLAREERHKK
AAVKLTDGDQDAVQAALARVRSKNAVPATGTISGDAPDNSEMNAAREARKAQARERRAQQETPVAPVTASASEDEDPRKA
AVAAALARVKAKKAAPQATAVETPAESPAVVTEEDPRKAAVAAALARVKAKKAAQQATAVETPAESPAVVTEEDPRKAAV
AAALARVKAKKAAQQATAVETPAESPAVVTEEDPRKAAVAAAIARAKAKRAAQSLTTADTDKE

Sequences:

>Translated_703_residues
MLNLFAAFKKDRIWDFDGGIHPPEMKTQSSGVPLRTAPLPDKFIIPLQQHLGPEGELCVKVGDTVLKGQPLTVGRGRTVP
VHAPTSGTISAITPHITAHPSGLAELCVIIQPDGEDRWCERAPVADYRQLTASELIQRIHQAGIAGLGGAGFPTASKLQG
GMNGVETLILNAAECEPYITADDRLMQEHADQVIEGTQILRHLLQPKVTLIGIEDNKPEAIAALKLALRGQPGIALRVIP
TKYPSGGAKQLTKILIGKEVPHGKHSSAIGVLMQNVGTAFAIKRAIVDGEPLIERVVTLTGEALSLPGNLWARIGTPVQH
LLKFAGFQPQAQQMVVMGGPLMGFTLPALHVPIVKISNCILAPSVSEMAPQEQEQSCIRCGLCVDACPAGLLPQQLYWFS
RGEEHEKARNHNLFDCIECGACAFVCPSNIPLVQYYRQEKAEIKAIDLEAARTAEAKARYEAKLARLEREKLAREERHKK
AAVKLTDGDQDAVQAALARVRSKNAVPATGTISGDAPDNSEMNAAREARKAQARERRAQQETPVAPVTASASEDEDPRKA
AVAAALARVKAKKAAPQATAVETPAESPAVVTEEDPRKAAVAAALARVKAKKAAQQATAVETPAESPAVVTEEDPRKAAV
AAALARVKAKKAAQQATAVETPAESPAVVTEEDPRKAAVAAAIARAKAKRAAQSLTTADTDKE
>Mature_703_residues
MLNLFAAFKKDRIWDFDGGIHPPEMKTQSSGVPLRTAPLPDKFIIPLQQHLGPEGELCVKVGDTVLKGQPLTVGRGRTVP
VHAPTSGTISAITPHITAHPSGLAELCVIIQPDGEDRWCERAPVADYRQLTASELIQRIHQAGIAGLGGAGFPTASKLQG
GMNGVETLILNAAECEPYITADDRLMQEHADQVIEGTQILRHLLQPKVTLIGIEDNKPEAIAALKLALRGQPGIALRVIP
TKYPSGGAKQLTKILIGKEVPHGKHSSAIGVLMQNVGTAFAIKRAIVDGEPLIERVVTLTGEALSLPGNLWARIGTPVQH
LLKFAGFQPQAQQMVVMGGPLMGFTLPALHVPIVKISNCILAPSVSEMAPQEQEQSCIRCGLCVDACPAGLLPQQLYWFS
RGEEHEKARNHNLFDCIECGACAFVCPSNIPLVQYYRQEKAEIKAIDLEAARTAEAKARYEAKLARLEREKLAREERHKK
AAVKLTDGDQDAVQAALARVRSKNAVPATGTISGDAPDNSEMNAAREARKAQARERRAQQETPVAPVTASASEDEDPRKA
AVAAALARVKAKKAAPQATAVETPAESPAVVTEEDPRKAAVAAALARVKAKKAAQQATAVETPAESPAVVTEEDPRKAAV
AAALARVKAKKAAQQATAVETPAESPAVVTEEDPRKAAVAAAIARAKAKRAAQSLTTADTDKE

Specific function: May be part of a membrane complex involved in electron transport

COG id: COG4656

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains

Homologues:

Organism=Escherichia coli, GI1787916, Length=565, Percent_Identity=67.787610619469, Blast_Score=778, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RNFC_SERP5 (A8GE00)

Other databases:

- EMBL:   CP000826
- RefSeq:   YP_001478468.1
- STRING:   A8GE00
- GeneID:   5605171
- GenomeReviews:   CP000826_GR
- KEGG:   spe:Spro_2239
- eggNOG:   COG4656
- HOGENOM:   HBG537098
- OMA:   PQQLFWH
- BioCyc:   SPRO399741:SPRO_2239-MONOMER
- GO:   GO:0006810
- HAMAP:   MF_00461
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010208
- InterPro:   IPR012285
- InterPro:   IPR009051
- InterPro:   IPR011538
- InterPro:   IPR019554
- Gene3D:   G3DSA:1.10.1060.10
- TIGRFAMs:   TIGR01945

Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB; SSF46548 Helical_ferredxn

EC number: NA

Molecular weight: Translated: 74812; Mature: 74812

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: PS00198 4FE4S_FER_1; PS51379 4FE4S_FER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNLFAAFKKDRIWDFDGGIHPPEMKTQSSGVPLRTAPLPDKFIIPLQQHLGPEGELCVK
CCCHHHHHHCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCEECCHHHHCCCCCCEEEE
VGDTVLKGQPLTVGRGRTVPVHAPTSGTISAITPHITAHPSGLAELCVIIQPDGEDRWCE
ECCCEECCCCEEECCCCEEEEECCCCCCHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHH
RAPVADYRQLTASELIQRIHQAGIAGLGGAGFPTASKLQGGMNGVETLILNAAECEPYIT
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHHHHEEHHCCCCEEC
ADDRLMQEHADQVIEGTQILRHLLQPKVTLIGIEDNKPEAIAALKLALRGQPGIALRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEC
TKYPSGGAKQLTKILIGKEVPHGKHSSAIGVLMQNVGTAFAIKRAIVDGEPLIERVVTLT
CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GEALSLPGNLWARIGTPVQHLLKFAGFQPQAQQMVVMGGPLMGFTLPALHVPIVKISNCI
CCHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHCCEE
LAPSVSEMAPQEQEQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEKARNHNLFDCIECG
ECCCHHHHCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHCCCCHHHHHHCCCCHHHHHHC
ACAFVCPSNIPLVQYYRQEKAEIKAIDLEAARTAEAKARYEAKLARLEREKLAREERHKK
CEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVKLTDGDQDAVQAALARVRSKNAVPATGTISGDAPDNSEMNAAREARKAQARERRAQQ
EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ETPVAPVTASASEDEDPRKAAVAAALARVKAKKAAPQATAVETPAESPAVVTEEDPRKAA
CCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHH
VAAALARVKAKKAAQQATAVETPAESPAVVTEEDPRKAAVAAALARVKAKKAAQQATAVE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
TPAESPAVVTEEDPRKAAVAAAIARAKAKRAAQSLTTADTDKE
CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLNLFAAFKKDRIWDFDGGIHPPEMKTQSSGVPLRTAPLPDKFIIPLQQHLGPEGELCVK
CCCHHHHHHCCCCEECCCCCCCCCCCCCCCCCCEEECCCCCCEECCHHHHCCCCCCEEEE
VGDTVLKGQPLTVGRGRTVPVHAPTSGTISAITPHITAHPSGLAELCVIIQPDGEDRWCE
ECCCEECCCCEEECCCCEEEEECCCCCCHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHH
RAPVADYRQLTASELIQRIHQAGIAGLGGAGFPTASKLQGGMNGVETLILNAAECEPYIT
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCHHHHHHHEEHHCCCCEEC
ADDRLMQEHADQVIEGTQILRHLLQPKVTLIGIEDNKPEAIAALKLALRGQPGIALRVIP
CHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEEEC
TKYPSGGAKQLTKILIGKEVPHGKHSSAIGVLMQNVGTAFAIKRAIVDGEPLIERVVTLT
CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC
GEALSLPGNLWARIGTPVQHLLKFAGFQPQAQQMVVMGGPLMGFTLPALHVPIVKISNCI
CCHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCEEEEECCCHHHHHHHHHHCCHHHHCCEE
LAPSVSEMAPQEQEQSCIRCGLCVDACPAGLLPQQLYWFSRGEEHEKARNHNLFDCIECG
ECCCHHHHCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHCCCCHHHHHHCCCCHHHHHHC
ACAFVCPSNIPLVQYYRQEKAEIKAIDLEAARTAEAKARYEAKLARLEREKLAREERHKK
CEEEECCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAVKLTDGDQDAVQAALARVRSKNAVPATGTISGDAPDNSEMNAAREARKAQARERRAQQ
EEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
ETPVAPVTASASEDEDPRKAAVAAALARVKAKKAAPQATAVETPAESPAVVTEEDPRKAA
CCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCHHHH
VAAALARVKAKKAAQQATAVETPAESPAVVTEEDPRKAAVAAALARVKAKKAAQQATAVE
HHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHC
TPAESPAVVTEEDPRKAAVAAAIARAKAKRAAQSLTTADTDKE
CCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: 4Fe-4S clusters [C]

Metal ions: Iron-Sulfur [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA