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The map label for this gene is ydcO [H]

Identifier: 157370470

GI number: 157370470

Start: 2428379

End: 2429572

Strand: Reverse

Name: ydcO [H]

Synonym: Spro_2230

Alternate gene names: 157370470

Gene position: 2429572-2428379 (Counterclockwise)

Preceding gene: 157370473

Following gene: 157370469

Centisome position: 44.59

GC content: 60.89

Gene sequence:

>1194_bases
ATGCGCCCTGCCATCTCTCTGCGTCATCTGTCTCTGCCTGCCGTTATGGCCGGGTTTGTTGCGGTATTGGTCGGCTACAC
CAGTTCGGCGGCCATTATCTTCCAGGCGGCTGCCGCTGCCGGTGCTACTCCCTTGCAGATCGGCGGCTGGCTGAGCATGT
TGGGGCTGGGGATGGGCATTACCTCGCTCGGGCTTTCGCTGTATTACCGCACGCCGATCCTGACCGCCTGGTCGACCCCC
GGCGCAGCGCTGCTGGTCACCAGCCTGCCCGGCACGCCGATTAACGAAGCGATTGGCGTATTTATCTTTGCCTCAGGGCT
GATCCTGCTGTGCGGCGTAACCGGGCTGTTCGCCCGGCTGATGGATTATATTCCGCAGGCCATTTCGGCGGCGATGTTGG
CGGGGATTTTGCTGCGCTTTGGCCTGGATGCGTTTGCCTCGCTACAGGTCAATTTCGCACTCAGCGCCGGAATGGGACTG
GTGTATCTGGTGACGCGGCGTTATCTGGCGCGTTATGCCATTGTACTGACGCTGCTGACCGGGCTGGCGATTGCGGCGCT
GCAGGGCAACATTCATCTTTCACCACAACCGCTGGCATTCGCCATGCCGGAATTTATTACGCCGCATTTTAGCTGGTCGA
CACTGCTGGGGATTGGCGTGCCGTTCTTCGTGGTCACCATGGCGTCACAAAATGCCCCCGGTATTGCCACGCTAAAGGCG
GCCGGCTACAGCGTGCCCACTTCGCCACTGATTAGCTGGACCGCGTTGACCGCGCTGCTGCTGGCCCCCTTCGGTGGATT
CTCGGTGTGTATTGCCGCCATTACTGCCGCCATTTGTATGGGGCCAGACGTACATCCCAATCCACAGCGCCGCTATATGG
CTGCCGTCGCCGCCGGGGTGTTTTATCTGTTGGCCGGCCTGTTTGGCGGCGTTATCAGTATGTTGTTCAGCGCGTTGCCC
GTGGCCCTGATCCATACCATTGCCGGGCTGGCCCTGCTGGGCACCATCGCCGGCAGTTTGCAACGCGCGCTGCAGGATGA
AAAGCAACGCGACGCCGCACTGATCGCCTTTTTGATCACTGCATCCGGCGTGACGCTGCTCGGCGTCGGCTCGGCATTTT
GGGGGATTATTGGCGGCGCAATCGCCCATATCATCCTGTCGTTACCGCAACGCGCCAGCCGTTCAGGGGACTAA

Upstream 100 bases:

>100_bases
GATATTGCGGCTGATTATAGCCACTTGTGCGCTATAACGCACGGTGCTATGCTCGCCGCTTATCGTGCGTTATAACGCAC
AACCTTTACCGGAGTGAACC

Downstream 100 bases:

>100_bases
CCAGCAAGTCGGGCTATAAATCGATCCCATCCGGCAATTTCTCCCCCCTTTGGCGATCTTCTGCTTAACTGAGAGAGGGA
CGAATGTTGCCCTCCAGGGA

Product: benzoate transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MRPAISLRHLSLPAVMAGFVAVLVGYTSSAAIIFQAAAAAGATPLQIGGWLSMLGLGMGITSLGLSLYYRTPILTAWSTP
GAALLVTSLPGTPINEAIGVFIFASGLILLCGVTGLFARLMDYIPQAISAAMLAGILLRFGLDAFASLQVNFALSAGMGL
VYLVTRRYLARYAIVLTLLTGLAIAALQGNIHLSPQPLAFAMPEFITPHFSWSTLLGIGVPFFVVTMASQNAPGIATLKA
AGYSVPTSPLISWTALTALLLAPFGGFSVCIAAITAAICMGPDVHPNPQRRYMAAVAAGVFYLLAGLFGGVISMLFSALP
VALIHTIAGLALLGTIAGSLQRALQDEKQRDAALIAFLITASGVTLLGVGSAFWGIIGGAIAHIILSLPQRASRSGD

Sequences:

>Translated_397_residues
MRPAISLRHLSLPAVMAGFVAVLVGYTSSAAIIFQAAAAAGATPLQIGGWLSMLGLGMGITSLGLSLYYRTPILTAWSTP
GAALLVTSLPGTPINEAIGVFIFASGLILLCGVTGLFARLMDYIPQAISAAMLAGILLRFGLDAFASLQVNFALSAGMGL
VYLVTRRYLARYAIVLTLLTGLAIAALQGNIHLSPQPLAFAMPEFITPHFSWSTLLGIGVPFFVVTMASQNAPGIATLKA
AGYSVPTSPLISWTALTALLLAPFGGFSVCIAAITAAICMGPDVHPNPQRRYMAAVAAGVFYLLAGLFGGVISMLFSALP
VALIHTIAGLALLGTIAGSLQRALQDEKQRDAALIAFLITASGVTLLGVGSAFWGIIGGAIAHIILSLPQRASRSGD
>Mature_397_residues
MRPAISLRHLSLPAVMAGFVAVLVGYTSSAAIIFQAAAAAGATPLQIGGWLSMLGLGMGITSLGLSLYYRTPILTAWSTP
GAALLVTSLPGTPINEAIGVFIFASGLILLCGVTGLFARLMDYIPQAISAAMLAGILLRFGLDAFASLQVNFALSAGMGL
VYLVTRRYLARYAIVLTLLTGLAIAALQGNIHLSPQPLAFAMPEFITPHFSWSTLLGIGVPFFVVTMASQNAPGIATLKA
AGYSVPTSPLISWTALTALLLAPFGGFSVCIAAITAAICMGPDVHPNPQRRYMAAVAAGVFYLLAGLFGGVISMLFSALP
VALIHTIAGLALLGTIAGSLQRALQDEKQRDAALIAFLITASGVTLLGVGSAFWGIIGGAIAHIILSLPQRASRSGD

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=382, Percent_Identity=57.5916230366492, Blast_Score=429, Evalue=1e-121,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 40924; Mature: 40924

Theoretical pI: Translated: 9.74; Mature: 9.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPAISLRHLSLPAVMAGFVAVLVGYTSSAAIIFQAAAAAGATPLQIGGWLSMLGLGMGI
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCH
TSLGLSLYYRTPILTAWSTPGAALLVTSLPGTPINEAIGVFIFASGLILLCGVTGLFARL
HHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MDYIPQAISAAMLAGILLRFGLDAFASLQVNFALSAGMGLVYLVTRRYLARYAIVLTLLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHH
GLAIAALQGNIHLSPQPLAFAMPEFITPHFSWSTLLGIGVPFFVVTMASQNAPGIATLKA
HHHHHHHCCCEECCCCCHHHHCHHHCCCCCCHHHHHHHCHHHHHHHHCCCCCCCEEEEEC
AGYSVPTSPLISWTALTALLLAPFGGFSVCIAAITAAICMGPDVHPNPQRRYMAAVAAGV
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
FYLLAGLFGGVISMLFSALPVALIHTIAGLALLGTIAGSLQRALQDEKQRDAALIAFLIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGVTLLGVGSAFWGIIGGAIAHIILSLPQRASRSGD
HCCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHCCCCC
>Mature Secondary Structure
MRPAISLRHLSLPAVMAGFVAVLVGYTSSAAIIFQAAAAAGATPLQIGGWLSMLGLGMGI
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCH
TSLGLSLYYRTPILTAWSTPGAALLVTSLPGTPINEAIGVFIFASGLILLCGVTGLFARL
HHHHHHHHHHCCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
MDYIPQAISAAMLAGILLRFGLDAFASLQVNFALSAGMGLVYLVTRRYLARYAIVLTLLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEHHCCCHHHHHHHHHHHHHHHHHHHHHH
GLAIAALQGNIHLSPQPLAFAMPEFITPHFSWSTLLGIGVPFFVVTMASQNAPGIATLKA
HHHHHHHCCCEECCCCCHHHHCHHHCCCCCCHHHHHHHCHHHHHHHHCCCCCCCEEEEEC
AGYSVPTSPLISWTALTALLLAPFGGFSVCIAAITAAICMGPDVHPNPQRRYMAAVAAGV
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
FYLLAGLFGGVISMLFSALPVALIHTIAGLALLGTIAGSLQRALQDEKQRDAALIAFLIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ASGVTLLGVGSAFWGIIGGAIAHIILSLPQRASRSGD
HCCCCEEEHHHHHHHHHHHHHHHHHHHCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]