| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is sfmD [H]
Identifier: 157370350
GI number: 157370350
Start: 2300917
End: 2303265
Strand: Reverse
Name: sfmD [H]
Synonym: Spro_2108
Alternate gene names: 157370350
Gene position: 2303265-2300917 (Counterclockwise)
Preceding gene: 157370351
Following gene: 157370349
Centisome position: 42.27
GC content: 58.28
Gene sequence:
>2349_bases ATGCCGGACACCACTTTGTACCTGGAGCCGGTGGTCAATGGGCGTCAAACCGGAAAAGTAGTACCGGTCAACTACCGAGG CGGCCACTATTACCTTACGCCGCAGCAGTTGCTCGATGCAGGCCTGCCGGTGGCGGATAAACAGGCGAAAGAAATTGCGG TCGACCAATTGGAGAAGGTTGACGTCACCTACAGTGGCGATACTCAGCAGTTGATGATCAACGTCCCCAACGACTGGTTA CCCAATCAGAAATTCAACGCTCAAAACCCGTTGGATCGCCTGCCGGCACAAAGCAGCCTCGGTCTGCTGTTCAATTATGA TATTTATGCCAGCCAAAGCAGCGCCAACGGCCAGCCGGGCTATCTTTCCGCCTGGAGTGAACAGCGGCTGTTCGACGGCT TTGGCGTAGTGTCCAACACCGGTATTTTCCGCGGCAGCTTTAACGACGGCGCCAACAACAGTGACCAGGGCAACCGCTAT ATCCGCTACGACAGCCAGTGGCGCTATAACGATGATGAACGCCTGCTCAGCTATACCGCCGGCGATCTGGCCACCGGCGC TCTGACCTGGAGCAGCTCGGTGCGTATCGGCGGCGTCCAGCTGGCACGTAACTTTGCCTCGCGCCCGGATCTGATCACCT ATCCGCTGCCGCAGTTTTCCGGCCAGGCGGCGCTGCCCAGCAGCGTCGATCTGTATATCAACAGCTATAAAAACAGCAGC ACCAGCGTTAACCCTGGCCCTTTTACCCTCAATACCGTGCCCTACATTAACGGAGCCGGGCAGGCCACGGTGGTGACTAC CGACGCGCTGGGCCGCCAGGTCAGTACCGTGGTGCCGTTTTATGTCGCCAGTAATCTGTTGCAGGCCGGCATGAGCGATT TCAGCCTGTCCAGCGGCGCGTTACGGCGCAATTATGGTATTAATTCAGCGGATTATGGACAGTGGGTGGCCAGTGGCAGC GGGCGTTACGGCGTCACGGACTGGTTAACCCTGGAAGGTCGAGCCGAAGGAGCCGCAGAGTTGGCGGTGGGCGGCGCAGG GGCCAATATTCGTGTTGGTCAGTGGGGGGTATTCAATGCCTCTTACAGCTACAGTCAGGCCGGCGAAAATGCCTTTAACG ATTATCAACCTTCGCAGCAGCGCAACTACTACGATCCGCTGACCGGTCAACCCATCCCTCAGCCCGACACCCAGCCGGTC TATCAGTACAGCACCGACCATGGCGATCAGAGCAGCATCGGCTACACCTACAGCAATCGCTATTACAGCCTGAATGCCCA GCGCATTCTGCGCAGTGCGGGCTTTGGCGATATTTCGGTGTATAAAAGTGACTATCGCCTGAGCCGCCGTACCGATCAAC TGACCGGCAGTATTGGTCTGAACCGATTCGGTAGCATCGGTGCGGGCTATTTCGATGTACGCGATGCCATTGGCCTGCGC ACTCGCCTGGTTAACTTCTCTTACAGCATTTCACTGTGGCGCAATACCAGCCTGTATGCGTCAGTGAACCGCGAAATCGG CAGCAGCGGCTACAGCGCCCAGCTGCAACTGTCTATCCCCTTCGACAGTTGGGGTACCGCCAGCGTCAGCGCCTCTCGTG ACAATGAAAACCGCTGGAACCAACGCGTCAGCTACAGCCGCGCCGCGCCGACCGACGGCGGTTTGGGCTGGAACCTGGCC TATGCCGATGGGCAAAGCAGCGAAAGCTACACCCAGGCCGATATCACCTGGCGCACCCGCCTGCTCGAAGCCCGCGGCGG GATGTACGGCAACAGCGATGATTACACCCGCTGGGGCGAAGTGAGTGGTTCGCTGGTGGCGATGCAAGGCGATCTGTACG CCACCAACACCATCAACGATGCTTTTGCATTGATCTCTACCGACGGCTATCCGGACATTCCGGTACGCTATGAGAATCAG TTAATCGGCGTGACCAACGCCAAAGGCTATCTGCTGGTGCCGACCGTCACCTCCTATTACCACGCCAAATTCCAAATCGA TCCGCTCAATCTGCCGGCGGACGTGGCGGTTCCCAGCGTGGAGAAAACCGTGGCGATCCGCGATCACAGCGGCTTCCTGG TCGATTTCCCTGTCCAGCAAATCTCCGCCGCCGACATCAAACTGGTCGACGCACAGGGGAAACCGCTGGCCAACGGCAGC GAAGTCGCGGTTATCGGTAGCAAGCAGCAAAGCTACGTCGGTTGGGATGGCATGGTTTATGTGGATCCGGTGCAACGGCA AAACCGCCTGAGCGTCATTCCGGCCGACGGCAGCGCCCCCTGTCAGGCGCAATTTAGCCTGACCAAAACCCAGGGGATCC AAAGCATCGGCCCCATTGTTTGCCAGTAA
Upstream 100 bases:
>100_bases GCTCAAACCGTTAGCCTTCGCCGTACTCTGCGCAGTGGCCACACCGTGGTCACCGTACGCCTGCGCCGATGATTTACCTC CGCCGCCCAGCGCCATCAGC
Downstream 100 bases:
>100_bases TTCATGATGGAGAAAAATATGATTAGTGGATCCAAAGCGTTATTACTGGCGCTGCTGCTGCTCATCGGCCGACAGGCGCT GGCCGACTGCACCACCGCCA
Product: fimbrial biogenesis outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 782; Mature: 781
Protein sequence:
>782_residues MPDTTLYLEPVVNGRQTGKVVPVNYRGGHYYLTPQQLLDAGLPVADKQAKEIAVDQLEKVDVTYSGDTQQLMINVPNDWL PNQKFNAQNPLDRLPAQSSLGLLFNYDIYASQSSANGQPGYLSAWSEQRLFDGFGVVSNTGIFRGSFNDGANNSDQGNRY IRYDSQWRYNDDERLLSYTAGDLATGALTWSSSVRIGGVQLARNFASRPDLITYPLPQFSGQAALPSSVDLYINSYKNSS TSVNPGPFTLNTVPYINGAGQATVVTTDALGRQVSTVVPFYVASNLLQAGMSDFSLSSGALRRNYGINSADYGQWVASGS GRYGVTDWLTLEGRAEGAAELAVGGAGANIRVGQWGVFNASYSYSQAGENAFNDYQPSQQRNYYDPLTGQPIPQPDTQPV YQYSTDHGDQSSIGYTYSNRYYSLNAQRILRSAGFGDISVYKSDYRLSRRTDQLTGSIGLNRFGSIGAGYFDVRDAIGLR TRLVNFSYSISLWRNTSLYASVNREIGSSGYSAQLQLSIPFDSWGTASVSASRDNENRWNQRVSYSRAAPTDGGLGWNLA YADGQSSESYTQADITWRTRLLEARGGMYGNSDDYTRWGEVSGSLVAMQGDLYATNTINDAFALISTDGYPDIPVRYENQ LIGVTNAKGYLLVPTVTSYYHAKFQIDPLNLPADVAVPSVEKTVAIRDHSGFLVDFPVQQISAADIKLVDAQGKPLANGS EVAVIGSKQQSYVGWDGMVYVDPVQRQNRLSVIPADGSAPCQAQFSLTKTQGIQSIGPIVCQ
Sequences:
>Translated_782_residues MPDTTLYLEPVVNGRQTGKVVPVNYRGGHYYLTPQQLLDAGLPVADKQAKEIAVDQLEKVDVTYSGDTQQLMINVPNDWL PNQKFNAQNPLDRLPAQSSLGLLFNYDIYASQSSANGQPGYLSAWSEQRLFDGFGVVSNTGIFRGSFNDGANNSDQGNRY IRYDSQWRYNDDERLLSYTAGDLATGALTWSSSVRIGGVQLARNFASRPDLITYPLPQFSGQAALPSSVDLYINSYKNSS TSVNPGPFTLNTVPYINGAGQATVVTTDALGRQVSTVVPFYVASNLLQAGMSDFSLSSGALRRNYGINSADYGQWVASGS GRYGVTDWLTLEGRAEGAAELAVGGAGANIRVGQWGVFNASYSYSQAGENAFNDYQPSQQRNYYDPLTGQPIPQPDTQPV YQYSTDHGDQSSIGYTYSNRYYSLNAQRILRSAGFGDISVYKSDYRLSRRTDQLTGSIGLNRFGSIGAGYFDVRDAIGLR TRLVNFSYSISLWRNTSLYASVNREIGSSGYSAQLQLSIPFDSWGTASVSASRDNENRWNQRVSYSRAAPTDGGLGWNLA YADGQSSESYTQADITWRTRLLEARGGMYGNSDDYTRWGEVSGSLVAMQGDLYATNTINDAFALISTDGYPDIPVRYENQ LIGVTNAKGYLLVPTVTSYYHAKFQIDPLNLPADVAVPSVEKTVAIRDHSGFLVDFPVQQISAADIKLVDAQGKPLANGS EVAVIGSKQQSYVGWDGMVYVDPVQRQNRLSVIPADGSAPCQAQFSLTKTQGIQSIGPIVCQ >Mature_781_residues PDTTLYLEPVVNGRQTGKVVPVNYRGGHYYLTPQQLLDAGLPVADKQAKEIAVDQLEKVDVTYSGDTQQLMINVPNDWLP NQKFNAQNPLDRLPAQSSLGLLFNYDIYASQSSANGQPGYLSAWSEQRLFDGFGVVSNTGIFRGSFNDGANNSDQGNRYI RYDSQWRYNDDERLLSYTAGDLATGALTWSSSVRIGGVQLARNFASRPDLITYPLPQFSGQAALPSSVDLYINSYKNSST SVNPGPFTLNTVPYINGAGQATVVTTDALGRQVSTVVPFYVASNLLQAGMSDFSLSSGALRRNYGINSADYGQWVASGSG RYGVTDWLTLEGRAEGAAELAVGGAGANIRVGQWGVFNASYSYSQAGENAFNDYQPSQQRNYYDPLTGQPIPQPDTQPVY QYSTDHGDQSSIGYTYSNRYYSLNAQRILRSAGFGDISVYKSDYRLSRRTDQLTGSIGLNRFGSIGAGYFDVRDAIGLRT RLVNFSYSISLWRNTSLYASVNREIGSSGYSAQLQLSIPFDSWGTASVSASRDNENRWNQRVSYSRAAPTDGGLGWNLAY ADGQSSESYTQADITWRTRLLEARGGMYGNSDDYTRWGEVSGSLVAMQGDLYATNTINDAFALISTDGYPDIPVRYENQL IGVTNAKGYLLVPTVTSYYHAKFQIDPLNLPADVAVPSVEKTVAIRDHSGFLVDFPVQQISAADIKLVDAQGKPLANGSE VAVIGSKQQSYVGWDGMVYVDPVQRQNRLSVIPADGSAPCQAQFSLTKTQGIQSIGPIVCQ
Specific function: Involved in the export and assembly of sfmA fimbrial subunits across the outer membrane [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1786744, Length=630, Percent_Identity=23.1746031746032, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 85315; Mature: 85184
Theoretical pI: Translated: 4.84; Mature: 4.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPDTTLYLEPVVNGRQTGKVVPVNYRGGHYYLTPQQLLDAGLPVADKQAKEIAVDQLEKV CCCCEEEEEECCCCCCCCCEEEEEECCCEEEECHHHHHHCCCCCCCCHHHHHHHHHHHEE DVTYSGDTQQLMINVPNDWLPNQKFNAQNPLDRLPAQSSLGLLFNYDIYASQSSANGQPG EEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEECCCCCCCCCC YLSAWSEQRLFDGFGVVSNTGIFRGSFNDGANNSDQGNRYIRYDSQWRYNDDERLLSYTA EEECCCCCHHHCCCCEEECCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHEEEEEC GDLATGALTWSSSVRIGGVQLARNFASRPDLITYPLPQFSGQAALPSSVDLYINSYKNSS CCCEEEEEEECCCEEECHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCC TSVNPGPFTLNTVPYINGAGQATVVTTDALGRQVSTVVPFYVASNLLQAGMSDFSLSSGA CCCCCCCEEEECCCEECCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC LRRNYGINSADYGQWVASGSGRYGVTDWLTLEGRAEGAAELAVGGAGANIRVGQWGVFNA HHHCCCCCCCCCCHHEECCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCEEEEEC SYSYSQAGENAFNDYQPSQQRNYYDPLTGQPIPQPDTQPVYQYSTDHGDQSSIGYTYSNR CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCE YYSLNAQRILRSAGFGDISVYKSDYRLSRRTDQLTGSIGLNRFGSIGAGYFDVRDAIGLR EEEECHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHCCE TRLVNFSYSISLWRNTSLYASVNREIGSSGYSAQLQLSIPFDSWGTASVSASRDNENRWN EEEEEEEEEEEEEECCEEEEEECHHHCCCCCCEEEEEEECCCCCCCEEEECCCCCCHHHH QRVSYSRAAPTDGGLGWNLAYADGQSSESYTQADITWRTRLLEARGGMYGNSDDYTRWGE HHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCC VSGSLVAMQGDLYATNTINDAFALISTDGYPDIPVRYENQLIGVTNAKGYLLVPTVTSYY CCCEEEEEECCEEEECCCCCEEEEEECCCCCCCCEEECCEEEEEECCCCEEEEEEECCEE HAKFQIDPLNLPADVAVPSVEKTVAIRDHSGFLVDFPVQQISAADIKLVDAQGKPLANGS EEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEECCHHHCCCCCEEEEECCCCCCCCCC EVAVIGSKQQSYVGWDGMVYVDPVQRQNRLSVIPADGSAPCQAQFSLTKTQGIQSIGPIV EEEEEECCCCCEECCCCEEEECCCCCCCCEEEEECCCCCCCEEEEEEHHHCCCHHCCCEE CQ CC >Mature Secondary Structure PDTTLYLEPVVNGRQTGKVVPVNYRGGHYYLTPQQLLDAGLPVADKQAKEIAVDQLEKV CCCEEEEEECCCCCCCCCEEEEEECCCEEEECHHHHHHCCCCCCCCHHHHHHHHHHHEE DVTYSGDTQQLMINVPNDWLPNQKFNAQNPLDRLPAQSSLGLLFNYDIYASQSSANGQPG EEEECCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCCCCCEEEEEEEEECCCCCCCCCC YLSAWSEQRLFDGFGVVSNTGIFRGSFNDGANNSDQGNRYIRYDSQWRYNDDERLLSYTA EEECCCCCHHHCCCCEEECCEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCHHEEEEEC GDLATGALTWSSSVRIGGVQLARNFASRPDLITYPLPQFSGQAALPSSVDLYINSYKNSS CCCEEEEEEECCCEEECHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCEEEEEEECCCCC TSVNPGPFTLNTVPYINGAGQATVVTTDALGRQVSTVVPFYVASNLLQAGMSDFSLSSGA CCCCCCCEEEECCCEECCCCCEEEEEHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC LRRNYGINSADYGQWVASGSGRYGVTDWLTLEGRAEGAAELAVGGAGANIRVGQWGVFNA HHHCCCCCCCCCCHHEECCCCCCCCEEEEEECCCCCCCEEEEECCCCCEEEECCEEEEEC SYSYSQAGENAFNDYQPSQQRNYYDPLTGQPIPQPDTQPVYQYSTDHGDQSSIGYTYSNR CCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEECCE YYSLNAQRILRSAGFGDISVYKSDYRLSRRTDQLTGSIGLNRFGSIGAGYFDVRDAIGLR EEEECHHHHHHHCCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCEEHHHHHHCCE TRLVNFSYSISLWRNTSLYASVNREIGSSGYSAQLQLSIPFDSWGTASVSASRDNENRWN EEEEEEEEEEEEEECCEEEEEECHHHCCCCCCEEEEEEECCCCCCCEEEECCCCCCHHHH QRVSYSRAAPTDGGLGWNLAYADGQSSESYTQADITWRTRLLEARGGMYGNSDDYTRWGE HHHCCCCCCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCC VSGSLVAMQGDLYATNTINDAFALISTDGYPDIPVRYENQLIGVTNAKGYLLVPTVTSYY CCCEEEEEECCEEEECCCCCEEEEEECCCCCCCCEEECCEEEEEECCCCEEEEEEECCEE HAKFQIDPLNLPADVAVPSVEKTVAIRDHSGFLVDFPVQQISAADIKLVDAQGKPLANGS EEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEECCHHHCCCCCEEEEECCCCCCCCCC EVAVIGSKQQSYVGWDGMVYVDPVQRQNRLSVIPADGSAPCQAQFSLTKTQGIQSIGPIV EEEEEECCCCCEECCCCEEEECCCCCCCCEEEEECCCCCCCEEEEEEHHHCCCHHCCCEE CQ CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]