| Definition | Serratia proteamaculans 568 chromosome, complete genome. |
|---|---|
| Accession | NC_009832 |
| Length | 5,448,853 |
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The map label for this gene is dap [H]
Identifier: 157370317
GI number: 157370317
Start: 2267799
End: 2269334
Strand: Reverse
Name: dap [H]
Synonym: Spro_2075
Alternate gene names: 157370317
Gene position: 2269334-2267799 (Counterclockwise)
Preceding gene: 157370318
Following gene: 157370309
Centisome position: 41.65
GC content: 61.91
Gene sequence:
>1536_bases ATGTCCGAAGTCCCACTAAACTGGCGCGCCGCACAGGCATGCGCCGAGCAGTTGCTGGCTGATTGGCAGCGCGACGGCGA GCCCGGCGGTGCCATTACCCTGTTCGATGCCGCACAGGTCCAGGCGTGCGCCAGCGCCGGTCTGGCTGACCTGGCACAAG AAACCCCTTTTACCGCCGACAGCGTGGTGCGTTATGCGTCGGTGACCAAACATATTTTTGCCGCGCTGGCGCTGAACGCC ACCGACAACGCCCTGAACCTGGATGACCGGCTTGGCGACTTGCTGCCGGAGCTGCAGGCCCCACTGGCGGACGTTACCGT CGGTCAGGCGCTGGACATGACCAGTGGGCTACCTGACGTGCGTGAAACCCTCGGGCTGCTGGGCATCTCGGTACATACCC GCAGCGAAGCGCAACCGGTGATGCAGTTCCTTCAGGAGCTTGGCGGGCTGAACTATCCGGCCGGCAGTGAAATCACCTAT ACCAATACCGGCTATCGCCTGGTTGAGGCGGCGCTGCAAGCCAAGGGGTATGACTTTAACCATCTGGTGCAGCAACACAT CGCCCAGCCGCTAAAAGTGCAGCTACGGGCGCCAGAGAGCTGGTTTGACGTGGTGCCGGGGCTAACCCCCGGTTACTGGC GTTCAAAACAGGGTTGGCAACTGGCCAGTGCCGGCCTGCATCTCTCCGCCTCCGGCAGTCTGACCGGCAGCGCCAATGCC CTCACCCGCTGGTTGCAAACGCTGCTGGCCGATCAGGGGCCGGGGCGCGGCGTGCTGGCGCAACTGAGCGCTCCGCGACA TCTCAATCAGGGGCAACTCAGCGCTTACGGGCTGGGGCTGGCGCAAACCCCGCTCGGCAAACATCGTCTGCTGGGACACG GCGGCTCCCACGCCGGTTACAAAACCTACTTCCTGCTGGCACCCGATAGGCAAGTCGGTGTCGCACTGGTGGCTAACCGC GAGGACTGCGACAGTTTCGGCATGGCATTGCAGGTGATGGCCGCCTTACTGGGCGCAACACTACCACAACGCAGCAGCGC CATTCCCGATGGCATTTACACCACGGTGGCCGATCCCTACTGGCTGGAAGTGAAGGACGGTAATGTCGCCTATATGGGGA GCGATGAACCGCTGTATCAGGCCGATGACGGCTACGCGGTCTCGCTTTCCGCCCATATGCCGATGCGGCTGAAATGGACC GGCGAAGCGGTTGAGGGAGAAGTCTGCCACGTAGAACGCCGTTTCCTGCCGGTCACGGCCAACCGTGAGTGTCTGAAACA CGTGCAGGGTTTGTGGTATCACCCGCAATACCGCACCGCCTTTGAAATTTGCGGTGACCAGGTACACATTGGCGTTGGCC CCGCAACGCAGTACGGCACTATCAGCTCACTGGGTCAGGGCCGCATGCTGGTCGAAAGCAGCGACGGCCCGTGGCAGAAG CGTTTTTGCCTGTACTTTCGTGGATATAGCGTGAATTTGATCGCCAATCGCAGCCGGGTGCTGACCTTTCAGCGTAGCGG TGCCGGTGGCGATTAA
Upstream 100 bases:
>100_bases AACAGCGCACAAAACAGCGGCACAGGGATTTCGCGGTACGCGACAATCTGGCGAAAAGCCCGCTGAGGCACAAATCAGGA ACTCACTCTGGAGGCGATGT
Downstream 100 bases:
>100_bases TCCTGCCCATCACCCCGCTTTGCCGGCCCGAACGGCCAGTAAGGCGGTAAACAGCCGCTGCTTGTCGGCCTCACTGAGGT TAGTCTGCGTTAGAGTATGA
Product: beta-lactamase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 511; Mature: 510
Protein sequence:
>511_residues MSEVPLNWRAAQACAEQLLADWQRDGEPGGAITLFDAAQVQACASAGLADLAQETPFTADSVVRYASVTKHIFAALALNA TDNALNLDDRLGDLLPELQAPLADVTVGQALDMTSGLPDVRETLGLLGISVHTRSEAQPVMQFLQELGGLNYPAGSEITY TNTGYRLVEAALQAKGYDFNHLVQQHIAQPLKVQLRAPESWFDVVPGLTPGYWRSKQGWQLASAGLHLSASGSLTGSANA LTRWLQTLLADQGPGRGVLAQLSAPRHLNQGQLSAYGLGLAQTPLGKHRLLGHGGSHAGYKTYFLLAPDRQVGVALVANR EDCDSFGMALQVMAALLGATLPQRSSAIPDGIYTTVADPYWLEVKDGNVAYMGSDEPLYQADDGYAVSLSAHMPMRLKWT GEAVEGEVCHVERRFLPVTANRECLKHVQGLWYHPQYRTAFEICGDQVHIGVGPATQYGTISSLGQGRMLVESSDGPWQK RFCLYFRGYSVNLIANRSRVLTFQRSGAGGD
Sequences:
>Translated_511_residues MSEVPLNWRAAQACAEQLLADWQRDGEPGGAITLFDAAQVQACASAGLADLAQETPFTADSVVRYASVTKHIFAALALNA TDNALNLDDRLGDLLPELQAPLADVTVGQALDMTSGLPDVRETLGLLGISVHTRSEAQPVMQFLQELGGLNYPAGSEITY TNTGYRLVEAALQAKGYDFNHLVQQHIAQPLKVQLRAPESWFDVVPGLTPGYWRSKQGWQLASAGLHLSASGSLTGSANA LTRWLQTLLADQGPGRGVLAQLSAPRHLNQGQLSAYGLGLAQTPLGKHRLLGHGGSHAGYKTYFLLAPDRQVGVALVANR EDCDSFGMALQVMAALLGATLPQRSSAIPDGIYTTVADPYWLEVKDGNVAYMGSDEPLYQADDGYAVSLSAHMPMRLKWT GEAVEGEVCHVERRFLPVTANRECLKHVQGLWYHPQYRTAFEICGDQVHIGVGPATQYGTISSLGQGRMLVESSDGPWQK RFCLYFRGYSVNLIANRSRVLTFQRSGAGGD >Mature_510_residues SEVPLNWRAAQACAEQLLADWQRDGEPGGAITLFDAAQVQACASAGLADLAQETPFTADSVVRYASVTKHIFAALALNAT DNALNLDDRLGDLLPELQAPLADVTVGQALDMTSGLPDVRETLGLLGISVHTRSEAQPVMQFLQELGGLNYPAGSEITYT NTGYRLVEAALQAKGYDFNHLVQQHIAQPLKVQLRAPESWFDVVPGLTPGYWRSKQGWQLASAGLHLSASGSLTGSANAL TRWLQTLLADQGPGRGVLAQLSAPRHLNQGQLSAYGLGLAQTPLGKHRLLGHGGSHAGYKTYFLLAPDRQVGVALVANRE DCDSFGMALQVMAALLGATLPQRSSAIPDGIYTTVADPYWLEVKDGNVAYMGSDEPLYQADDGYAVSLSAHMPMRLKWTG EAVEGEVCHVERRFLPVTANRECLKHVQGLWYHPQYRTAFEICGDQVHIGVGPATQYGTISSLGQGRMLVESSDGPWQKR FCLYFRGYSVNLIANRSRVLTFQRSGAGGD
Specific function: Hydrolyzes N-terminal residues in D-amino acid- containing peptides [H]
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S12 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 - InterPro: IPR009090 - InterPro: IPR012857 [H]
Pfam domain/function: PF00144 Beta-lactamase; PF07932 DAP_C [H]
EC number: =3.4.11.19 [H]
Molecular weight: Translated: 55176; Mature: 55045
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEVPLNWRAAQACAEQLLADWQRDGEPGGAITLFDAAQVQACASAGLADLAQETPFTAD CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCHHHHHHCCCCCHH SVVRYASVTKHIFAALALNATDNALNLDDRLGDLLPELQAPLADVTVGQALDMTSGLPDV HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCHHHHCCCCCHH RETLGLLGISVHTRSEAQPVMQFLQELGGLNYPAGSEITYTNTGYRLVEAALQAKGYDFN HHHHHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCHH HLVQQHIAQPLKVQLRAPESWFDVVPGLTPGYWRSKQGWQLASAGLHLSASGSLTGSANA HHHHHHCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHH LTRWLQTLLADQGPGRGVLAQLSAPRHLNQGQLSAYGLGLAQTPLGKHRLLGHGGSHAGY HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHEECCCCCCCCCCHHHCCCCCCCCCC KTYFLLAPDRQVGVALVANREDCDSFGMALQVMAALLGATLPQRSSAIPDGIYTTVADPY EEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCE WLEVKDGNVAYMGSDEPLYQADDGYAVSLSAHMPMRLKWTGEAVEGEVCHVERRFLPVTA EEEEECCCEEEECCCCCCEECCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEEEECCC NRECLKHVQGLWYHPQYRTAFEICGDQVHIGVGPATQYGTISSLGQGRMLVESSDGPWQK CHHHHHHHHCCEECCCHHHHHHHCCCEEEEECCCCCCCCCHHHCCCCEEEEECCCCCCCC RFCLYFRGYSVNLIANRSRVLTFQRSGAGGD EEEEEEECCEEEEEECCCEEEEEECCCCCCC >Mature Secondary Structure SEVPLNWRAAQACAEQLLADWQRDGEPGGAITLFDAAQVQACASAGLADLAQETPFTAD CCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHCCHHHHHHCCCCCHH SVVRYASVTKHIFAALALNATDNALNLDDRLGDLLPELQAPLADVTVGQALDMTSGLPDV HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCCHHHHCCCCCHH RETLGLLGISVHTRSEAQPVMQFLQELGGLNYPAGSEITYTNTGYRLVEAALQAKGYDFN HHHHHHHEEEEECCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCHH HLVQQHIAQPLKVQLRAPESWFDVVPGLTPGYWRSKQGWQLASAGLHLSASGSLTGSANA HHHHHHCCCCEEEEEECCHHHHHHCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHH LTRWLQTLLADQGPGRGVLAQLSAPRHLNQGQLSAYGLGLAQTPLGKHRLLGHGGSHAGY HHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHEECCCCCCCCCCHHHCCCCCCCCCC KTYFLLAPDRQVGVALVANREDCDSFGMALQVMAALLGATLPQRSSAIPDGIYTTVADPY EEEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCE WLEVKDGNVAYMGSDEPLYQADDGYAVSLSAHMPMRLKWTGEAVEGEVCHVERRFLPVTA EEEEECCCEEEECCCCCCEECCCCEEEEEECCCCEEEEECCCCCCCCEEEEEEEEEECCC NRECLKHVQGLWYHPQYRTAFEICGDQVHIGVGPATQYGTISSLGQGRMLVESSDGPWQK CHHHHHHHHCCEECCCHHHHHHHCCCEEEEECCCCCCCCCHHHCCCCEEEEECCCCCCCC RFCLYFRGYSVNLIANRSRVLTFQRSGAGGD EEEEEEECCEEEEEECCCEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA